KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:40 2014 Check: 00 .. Name: ENSP00000450244/1-806 Len: 842 Check: 5474 Weight: 1.00 Name: ENSBTAP00000022254/1-802 Len: 842 Check: 42 Weight: 1.00 Name: ENSTTRP00000015822/1-801 Len: 842 Check: 5460 Weight: 1.00 Name: bmy_13623T0/1-679 Len: 842 Check: 3242 Weight: 1.00 Name: BACU003439/1-813 Len: 842 Check: 2250 Weight: 1.00 // 1 50 ENSP00000450244/1-806 MAKSSSLNVR VVEGRALPAK DV-------- ----SGSSDP YCL-----VK ENSBTAP00000022254/1-802 MAKSSSLNVR VVEGRALPAK DV-------- ----SGSSDP YCI-----VK ENSTTRP00000015822/1-801 MAKSSSLNVR VVEGRALPAK DV-------- ----SGSSDP YCI-----VK bmy_13623T0/1-679 MAKSSSLNVR VVEGRALPAK DVLSPPLGSE EPLSSGAGEP EGTSSREEVR BACU003439/1-813 MAKSSSLNVR VVEGRALPAK DV-------- ----SGSSDP YCI-----VK 51 100 ENSP00000450244/1-806 VDDEVVA--- --------RT ATVWRSLGPF WGEEYTVHLP LDFHQLAFYV ENSBTAP00000022254/1-802 VDDEVVA--- --------RT ATIWRSLSPF WGEEYTVHLP LDFHHLSFYV ENSTTRP00000015822/1-801 VDDEVVA--- --------RT ATIWRSLSPF WGEEYTVHLP LDFHHLAFYV bmy_13623T0/1-679 VPAACVAQRP PAPRVPFCRT ATIWRSLSPF WGEEYTVHLP LDFHQLAFYV BACU003439/1-813 VDDEVVA--- --------RT ATIWRSLSPF WGEEYTVHLP LDFHQLAFYV 101 150 ENSP00000450244/1-806 LDEDTVGHDD IIGKISLSRE AITADPRGID SWINLSRVDP DAEVQGEICL ENSBTAP00000022254/1-802 LDEDTVGQDD IIGKISLSRE AITADPRGID SWINLSRVDP DSEVQGEICL ENSTTRP00000015822/1-801 LDEDTVGHDD IIGKISLSRE AITADPRGID SWINLSHVDP DAEVQGEICL bmy_13623T0/1-679 LDEDTVGHDD IIGKISLSRE AIAADPRGS- ---------- ---------- BACU003439/1-813 LDEDTVGHDD IIGKISLSRE AIAADPRGID SWINLSHVDP DAEVQGEICL 151 200 ENSP00000450244/1-806 SVQMLEDGQG RCLRCHVLQA RDLAPRDISG TSDPFARVFW GSQSLETSTI ENSBTAP00000022254/1-802 SVQTLEDVRG RCLHCHVLQA RDLAPRDISG TSDPFARVFW GSQSLETSTI ENSTTRP00000015822/1-801 AVQMLEDVRG RCLRCHVLQA RDLAPRDISG TSDPFARVFW GSQSLETSTI bmy_13623T0/1-679 ---------- ---------- ---------- ---------- ---------- BACU003439/1-813 AVQMLEDVRG RCLRCHVLQA RDLAPRDISG TSDPFARVFW GSQSLETSTI 201 250 ENSP00000450244/1-806 KKTRFPHWDE VLELREMPGA PSPLRVELWD WDMVGKNDFL GMVEFSPKTL ENSBTAP00000022254/1-802 KKTRFPHWDE VLELREMPGS PSPLRVELWD WDMVGKNDFL GMVEFPPQVL ENSTTRP00000015822/1-801 KKTRFPHWDE VLELREMPGP PSPLRVELWD WDMVGKNDFL GMXXFPPQVL bmy_13623T0/1-679 ---------- ---------- PSPLRVELWD WDMVGKNDFL GMVEFPPQVL BACU003439/1-813 KKTRFPHWDE VLELREMPGS PSPLRVELWD WDMVGKNDFL GMVEFPPQVL 251 300 ENSP00000450244/1-806 QQKPPKGWFR LLPFPRAEED SGGNLGALRV KVRLIEDRVL PSQCYQPLME ENSBTAP00000022254/1-802 QHNPPNGWFR LLPFPRAEED SGGSLGALRL KVRLTEDSVL PSRYYQPLRE ENSTTRP00000015822/1-801 QQNPPNGWFH -LPFPR--ED SGGSLGALRL KVRLTEDRVL PSQYYQPLRE bmy_13623T0/1-679 QQNPPNGWFH LLPFPRAEED SGGSLGALRL KVRLTEDRIL PSQYYQPLRE BACU003439/1-813 QQNPPNGWFH LLPFPRAEED SGGSLGALRL KVRLTEDRIL PSQYYQPLRE 301 350 ENSP00000450244/1-806 LLMESVQGPA EEDTASPLAL LEELTLGDCR QDLATKLVKL FLGRGLAGRF ENSBTAP00000022254/1-802 LLMESVLGPA EEDAASPLAV LEELTSGDCR QELATKLVKL FLGQGLTGPF ENSTTRP00000015822/1-801 LLMESVLGPA EEDAASPLAV LEELTSGDCR QELATKLVKL FLGQGLAGPF bmy_13623T0/1-679 LLMESVLGPA EEDAASPLAV LEELTSGDCR QELATKLVKL FLGQGLAGPF BACU003439/1-813 LLMASVLGPA EEDAANPLAV LEELTSGDCR QELATKLVKL FLGQGLAGPF 351 400 ENSP00000450244/1-806 LDYLTRREVA RTMDPNTLFR SNSLASKSME QFMKLVGMPY LHEVLKPVIS ENSBTAP00000022254/1-802 LDYLTRREVA RTTDPNTLFR SNSLASKSVE QFMKLVGMPY LHEVLRPVIN ENSTTRP00000015822/1-801 LDYLTRREVA RTTDPNTLFR SNSLASKSME QFLKLVGMPY LHEVLRPVIN bmy_13623T0/1-679 LDYLTRREVA RTTDPNTLFR SNSLASKSME QFLKLVGMPY LHEVLRPVIN BACU003439/1-813 LDYLTRREVA RTTDPNTLFR SNSLASKSME QFLKLVGMPY LHEVLRPVIN 401 450 ENSP00000450244/1-806 RVFEEKKYME LDPCKMDLGR TRRISFKGAL SEEQMRETSL GLLTGYLGPI ENSBTAP00000022254/1-802 RVFEERKYME LDPCKMDLGR TRRISFKGAP SEEHVREASL GLLTGYLGPI ENSTTRP00000015822/1-801 RVFEEKKYME LDPCKMDLGR TRRISFKGAP SEEHVREASL GLLTGYLEPI bmy_13623T0/1-679 RVFEEKKYME LDPCK----- ---------- ---------- ---------- BACU003439/1-813 RVFEERKYME LDPCKMDLGR TRRISFKGAP SEEHVREVSL GLLTGYLGPI 451 500 ENSP00000450244/1-806 VDAIVGSVGR CPPAMRLAFK QLHRRVEERF PQAEHQQDVK YLAISGFLFL ENSBTAP00000022254/1-802 VDAIVGSVGR CPSAMRLAFK QLRQRVEERF PQAEH-EDVK YLAISGFLFL ENSTTRP00000015822/1-801 VDTIVGSVGR CPPAIRLAFK QLRQCVEERF PQAEH-KDVK NLAISGFLFL bmy_13623T0/1-679 ---------- ---------- ---------- -------DVK NLAISGFLFL BACU003439/1-813 MDAIVGSVGR CPPAIRLAFK QLRHCVEERF PQAEH-EDVK NLAISGFLFL 501 550 ENSP00000450244/1-806 RFFAPAILTP KLFDLRDQHA DPQTSRSLLL LAKAVQSIGN LGQQLGQGKE ENSBTAP00000022254/1-802 RFFAPAILSP KLFDLRDQHA DPQTSRSLLL LAKAVQSIGN LGQQLGQGKE ENSTTRP00000015822/1-801 RFFAPAILTP KLFDLRDQHA DPQTRRSLLL LAKAVQSIGN LGQQLGQGKE bmy_13623T0/1-679 RFFAPAILTP KLFDLRDQHA DPQTSRSLLL LAKAVQSIGN LGQQLGQGKE BACU003439/1-813 RFFAPAILTP KLFDLRDQHA DPQTSRSLLL LAKAVQSIGN LGQQLGQGKE 551 600 ENSP00000450244/1-806 LWMAPLHPFL LQCVSRVRDF LDRLVDVDGD EEAGVPARAL FPPSAIVREG ENSBTAP00000022254/1-802 LWMAPLHPFL LQSISRVRDF LDQLVEVDGK EEAGGPARAL VPPSMTVREG ENSTTRP00000015822/1-801 LWMAPLHPFL LQSISRVRDF LDQLVDVDGK EA-GGPARAL VPPSVTVREG bmy_13623T0/1-679 LWMAPLHPFL LQSISRVRDF LDQLVDVDGK EEPGGPVRAL VPPSVTVREG BACU003439/1-813 LWMSPLHPFL LQSISRVRDF LDQLVDVDGK EEPGGPARAL VPPSVTVREG 601 650 ENSP00000450244/1-806 YLLKRKEEPA GLATRFAFKK RYVWLSGETL SFSKSPEWQM CHSIPVSHIR ENSBTAP00000022254/1-802 YLLKRKEEPA GLATRFAFKK RYFRLSGEML SYSKSPEWQV RSSIPVSHIR ENSTTRP00000015822/1-801 YLLKRKEEPA GLATRFAFKK RYFRLSGEML SYSRSPECQT RSSLPVSHIR bmy_13623T0/1-679 YLLKRKEEPS GLATRFAFKK RYFRLSGEML SYSRNPEWQT RSSIPVSHIR BACU003439/1-813 YLLKRKEEPS GLATRFAFKK RYFRLSGEML SYSRNPEWQT RSSIPVSHIR 651 700 ENSP00000450244/1-806 AVERVDEGAF QLPHVMQVVT QDGTGALHTT YLQCKNVNEL NQWLSALRKA ENSBTAP00000022254/1-802 AVERVDEGAF QLPHVMQVVT QDGAGAPHTT YLQCKNVNEL NQWLSALRKA ENSTTRP00000015822/1-801 AVERVDEGAF QLPHVMQVVT QDGAGALHTT YLQCKNVNEL NQWLSALRKA bmy_13623T0/1-679 AVERVDEGAF QLPHVMQVVT QDGAGALHTT YLQCKNVNEL NQWLSALRKA BACU003439/1-813 AVERVDEGAF QLPHVMQVVT QDGAGALHTT YLQCKNVNEL NQWLSALRKA 701 750 ENSP00000450244/1-806 SAPNPNKLAA CHPGAFRSAR WTCCLQAERS AAGCSRTHSA VTLGDWSDPL ENSBTAP00000022254/1-802 SAPNPDKLAS CHPGAFRSGH WTCCLQAERS ASGCSRTHSA VTLGDWSDPL ENSTTRP00000015822/1-801 SAPNPDKLAA WHPGAFRSAH WTCCHQAERS AAGCSRTHSA VTLGDWSDPL bmy_13623T0/1-679 SAPNPDKLAA CHPGAFRSAH WTCCLQAERS AAGCSRTHSA VTLGDWSDPL BACU003439/1-813 SAPNPDKLAA CHPGAFRSAH WTCCLQAERS AAGCSRTHSA VTLGDWSDPL 751 800 ENSP00000450244/1-806 DPDAEAQTVY RQLLLGRDQL RLKLLEDSNM DTTLEADT-- ------GACP ENSBTAP00000022254/1-802 DPDAETQMVY RQLLLGRDRL RMKFLEDSNM DTTLEAATEQ GSSAMEGACT ENSTTRP00000015822/1-801 DPDAETQMVY RQLLLGRDRL RMKFLEDPTL DTTPEADT-- ------GACP bmy_13623T0/1-679 DPDAETQMVY RQLLLGRDRL RMKFLEDSTP DTTPEADTEK GSSATEGACP BACU003439/1-813 DPDAETQMVY RQLLLGRDRL RMKFLEDSNL VTTPEADTEK GSSATEGACP 801 850 ENSP00000450244/1-806 EVLARQRAAT ARLLEVLADL DRAHEEFQQQ ERGKAALGPL GP ENSBTAP00000022254/1-802 DALARQREAA ARLLKVLTDL DQAHEEFQQQ E--------- -- ENSTTRP00000015822/1-801 AALAHQREAA ARLLEVLADL DQAHEEFQPQ EQRKVAPGPL RP bmy_13623T0/1-679 DALAHQREAA ARLLEVLVDL DQAHEEFQHQ EQRKVAPGPL RP BACU003439/1-813 DALAHQREAA ARLLEVLADL DQAHEEFQHQ EQRKVAPGPL RP