KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:42 2014 Check: 00 .. Name: ENSTTRP00000006251/1-1101 Len: 1171 Check: 552 Weight: 1.00 Name: bmy_16699T0/1-1104 Len: 1171 Check: 7265 Weight: 1.00 Name: BACU007163/1-1095 Len: 1171 Check: 8584 Weight: 1.00 Name: ENSP00000253792/1-1101 Len: 1171 Check: 2388 Weight: 1.00 Name: ENSBTAP00000022258/1-1091 Len: 1171 Check: 6494 Weight: 1.00 // 1 50 ENSTTRP00000006251/1-1101 ---MSAKAIS EQTGKELLYK YICTTSAIQN RFKYARVTPD TDWAHLLQDH bmy_16699T0/1-1104 ---MSAKAIS EQTGKELLYK YICTTSAIQN RFKYARVTPD TDWAHLLQDH BACU007163/1-1095 SAAMSAKAIS EQTGKELLYK YICTTSAIQN RFKYARVTPD TDWAHLLQDH ENSP00000253792/1-1101 ---MSAKAIS EQTGKELLYK FICTTSAIQN RFKYARVTPD TDWARLLQDH ENSBTAP00000022258/1-1091 ---MSAKAIS EQTGKELLYK YICTTSAIQN RFKYARVTPD TDWARLLQDH 51 100 ENSTTRP00000006251/1-1101 PWLLSQSLVV KPDQLIKRRG KLGLVGVNLT LDGVKSWLKP RLGQEATVGK bmy_16699T0/1-1104 PWLLSQSLVV KPDQLIKRRG KLGLVGVNLT LDGVKSWLKP RLGQEATVGK BACU007163/1-1095 PWLLSQSLVV KPDQLIKRRG KLGLVGVNLT LDGVKSWLKP RLGQEATVGK ENSP00000253792/1-1101 PWLLSQNLVV KPDQLIKRRG KLGLVGVNLT LDGVKSWLKP RLGQEATVGK ENSBTAP00000022258/1-1091 PWLLSQSLVV KPDQLIKRRG KLGLIGVNLT LDGVKSWLKP RLGQEATVGK 101 150 ENSTTRP00000006251/1-1101 ARGFLKNFLI EPFVPHTQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16699T0/1-1104 ARGFLKNFLI EPFVPHTQEE EFYVCIYATR EGDYVLFHHE GGVDVGDVDA BACU007163/1-1095 ARGFLKNFLI EPFVPHTQEE EFYVCIYATR EGDYVLFHHE GGVDVGDVDA ENSP00000253792/1-1101 ATGFLKNFLI EPFVPHSQAE EFYVCIYATR EGDYVLFHHE GGVDVGDVDA ENSBTAP00000022258/1-1091 ATGFLKNFLI EPFVPHTQEE EFYVCIYATR EGDYVLFHHE GGVDVGDVDA 151 200 ENSTTRP00000006251/1-1101 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-------- ---------- bmy_16699T0/1-1104 KAQKLLVGVD EKLNLEGIKK HLLVHAPEDK KELSERDGRE VAAEERGRPT BACU007163/1-1095 KAQKLLVGVD EKLNLEGIKK HLLVHAPEDK KE-------- ---------- ENSP00000253792/1-1101 KAQKLLVGVD EKLNPEDIKK HLLVHAPEDK KE-------- ---------- ENSBTAP00000022258/1-1091 KAQKLLVGVD EKLNPEDIKK HLLVHAPEDK KE-------- ---------- 201 250 ENSTTRP00000006251/1-1101 ---------- ---------- ---------- ---------- ----XXXXXX bmy_16699T0/1-1104 ALGTEWGKQS GLPCLGTHYT APASGRKWLK SDVWGAGFGA ESEGILASFI BACU007163/1-1095 ---------- ---------- ---------- ---------- ----ILASFI ENSP00000253792/1-1101 ---------- ---------- ---------- ---------- ----ILASFI ENSBTAP00000022258/1-1091 ---------- ---------- ---------- ---------- ----ILASFI 251 300 ENSTTRP00000006251/1-1101 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCKVKWGD bmy_16699T0/1-1104 SGLFNFYEDL YFTYLEINPL VVTKDGVYIL DLAAKVDATA DYICKVKWGD BACU007163/1-1095 SGLFNFYEDL YFTYLEINPL VVTKDGVYIL DLAAKVDATA DYICKVKWGD ENSP00000253792/1-1101 SGLFNFYEDL YFTYLEINPL VVTKDGVYVL DLAAKVDATA DYICKVKWGD ENSBTAP00000022258/1-1091 SGLFNFYEDL YFTYLEINPL VVTKDGVYVL DLAAKVDATA DYICKVKWGD 301 350 ENSTTRP00000006251/1-1101 IEFPPPFGRE AYPEEAYIAD LDAKSGASLK LTLLNPKGRI WTMVAGGGAS bmy_16699T0/1-1104 IEFPPPFGRE AYPEEAYIAD LDAKSGASLK LTLLNPKGRI WTMVAGGGAS BACU007163/1-1095 IEFPPPFGRE AYPEEAYIAD LDAKSGASLK LTLLNPKGRI WTMVAGGGAS ENSP00000253792/1-1101 IEFPPPFGRE AYPEEAYIAD LDAKSGASLK LTLLNPKGRI WTMVAGGGAS ENSBTAP00000022258/1-1091 IEFPPPFGRE AYPEEAYIAD LDAKSGASLK LTLLNPKGRI WTMVAGGGAS 351 400 ENSTTRP00000006251/1-1101 VVYXXXXXXX XXXXXXXXXX XXXXXPSEQQ TYDYAKTILS LMTREKHPDG bmy_16699T0/1-1104 VVYSDTICDL GGVNELANYG EYSGAPSEQQ TYDYAKTILS LMTREKHPDG BACU007163/1-1095 VVYSDTICDL GGVNELANYG EYSGAPSEQQ TYDYAKTILS LMTREKHPDG ENSP00000253792/1-1101 VVYSDTICDL GGVNELANYG EYSGAPSEQQ TYDYAKTILS LMTREKHPDG ENSBTAP00000022258/1-1091 VVYSDTICDL GGVNELANYG EYSGAPSEQQ TYDYAKTILS LMTREKHPDG 401 450 ENSTTRP00000006251/1-1101 KILIIGGSIA NFTNVAATFK GIVRAIRDYQ GPLKEHEVTI FVRRGGPNYQ bmy_16699T0/1-1104 KILIIGGSIA NFTNVAATFK GIVRAIRDYQ GPLKEHEVTI FVRRGGPNYQ BACU007163/1-1095 KILIIGGSIA NFTNVAATFK GIVRAIRDYQ GPLKEHEVTI FVRRGGPNYQ ENSP00000253792/1-1101 KILIIGGSIA NFTNVAATFK GIVRAIRDYQ GPLKEHEVTI FVRRGGPNYQ ENSBTAP00000022258/1-1091 KILIIGGSIA NFTNVAATFK GIVRAIRDYQ GPLKEHEVTI FVRRGGPNYQ 451 500 ENSTTRP00000006251/1-1101 EGLRVMGEVG KTTGIPIHVF GTETHMTAIV GMALGHRPIP NQPPTAAHTA bmy_16699T0/1-1104 EGLRVMGEVG KTTGIPIHVF GTETHMTAIV GMALGHRPIP NQPPTAAHTA BACU007163/1-1095 EGLRVMGEVG KTTGIPIHVF GTETHMTAIV GMALGHRPIP NQPPTAAHTA ENSP00000253792/1-1101 EGLRVMGEVG KTTGIPIHVF GTETHMTAIV GMALGHRPIP NQPPTAAHTA ENSBTAP00000022258/1-1091 EGLRVMGEVG KTTGIPIHVF GTETHMTAIV GMALGHRPIP NQPPTAAHTA 501 550 ENSTTRP00000006251/1-1101 NFLLNASGST STPAPSRTAS FSESRADEVA PAKKAKPAMP LDSVPGPRSL bmy_16699T0/1-1104 NFLLNASGST STPAPSRTAS FSESRADEVA PAKKAKPAM- ---------P BACU007163/1-1095 NFLLNASGST STPAPSRTAS FSESRADEVA PAKKAKPAM- ---------P ENSP00000253792/1-1101 NFLLNASGST STPAPSRTAS FSESRADEVA PAKKAKPAMP QDSVPSPRSL ENSBTAP00000022258/1-1091 NFLLNASGST STPAPSRTAS FSESRTDEVA PAKKAKPAM- ---------L 551 600 ENSTTRP00000006251/1-1101 QXXXXXXXXX XXXXXXXXXX XRAVQGMLDF DYVCSRDEPS VAAMVYPFTG bmy_16699T0/1-1104 LGKSATLFSR HTKAIVWGMQ TRAVQGMLDF DYVCSRDEPS VAAMVYPFTG BACU007163/1-1095 LGKSATLFSR HTKTIVWGMQ TRAVQGMLDF DYVCSRDEPS VAAMVYPFTG ENSP00000253792/1-1101 QGKSTTLFSR HTKAIVWGMQ TRAVQGMLDF DYVCSRDEPS VAAMVYPFTG ENSBTAP00000022258/1-1091 QGKSATLFSR HTKAIVWGMQ TRAVQGMLDF DYVCSRDEPS VAAMVYPFTG 601 650 ENSTTRP00000006251/1-1101 DHKQKFYWGH KEILIPVFKN MADAMKKHPE VDVLISFASL RSAYDSTMET bmy_16699T0/1-1104 DHKQKFYWGH KEILIPVFKN MADAMKKHPE VDVLISFASL RSAYDSTIET BACU007163/1-1095 DHKQKFYWGH KEILIPVFKN MADAMKKHPE VDVLISFASL RSAYDSTIET ENSP00000253792/1-1101 DHKQKFYWGH KEILIPVFKN MADAMRKHPE VDVLINFASL RSAYDSTMET ENSBTAP00000022258/1-1091 DHKQKFYWGH KEILIPVFKN MADAMKKHPE VDVLINFASL RSAYDSTMET 651 700 ENSTTRP00000006251/1-1101 MNHAQIRTIA IIAEGIPEAL TRKLIKKAEQ KGVTIIGPAT XXXXXXXXXX bmy_16699T0/1-1104 MNHAQIRTIA IIAEGIPEAL TRKLIKKAEQ KGVTIIGPAT VGGIKPGCFK BACU007163/1-1095 MNHAQIRTIA IIAEGIPEAL TRKLIKKAEQ KGVTIIGPAT VGGIKPGCFK ENSP00000253792/1-1101 MNYAQIRTIA IIAEGIPEAL TRKLIKKADQ KGVTIIGPAT VGGIKPGCFK ENSBTAP00000022258/1-1091 MNYAQIRTIA IIAEGIPEAL TRKLIKKADQ KGVTIIGPAT VGGIKPGCFK 701 750 ENSTTRP00000006251/1-1101 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16699T0/1-1104 IGNTGGMLDN ILASKLYRPG SVAYVSRSGG MSNELNNIIS RTTDGVYEGV BACU007163/1-1095 IGNTGGMLDN ILASKLYRPG SVAYVSRSGG MSNELNNIIS RTTDGVYEGV ENSP00000253792/1-1101 IGNTGGMLDN ILASKLYRPG SVAYVSRSGG MSNELNNIIS RTTDGVYEGV ENSBTAP00000022258/1-1091 IGNTGGMLDN ILASKLYRPG SVAYVSRSGG MSNELNNIIS RTTDGVYEGV 751 800 ENSTTRP00000006251/1-1101 XXXXXX-XXX XXXXX---XX XXXXXXXXXX XXXXXXXIGG TEEYKISRGI bmy_16699T0/1-1104 AIGGDS-VLS TGVLPTPVHT PHLTESPDPE HPPCSHQIGG TEEYKICRGI BACU007163/1-1095 AIGGGRGYPG STFMD---HV LRYQDTPGVK MIVVLGEIGG TEEYKICRGI ENSP00000253792/1-1101 AIGGDR-YPG STFMD---HV LRYQDTPGVK MIVVLGEIGG TEEYKICRGI ENSBTAP00000022258/1-1091 AIGGDR-YPG STFMD---HV LRYQDTAGVK MIVVLGEIGG TEEYKICRGV 801 850 ENSTTRP00000006251/1-1101 KEGRITKPVV CWCIGTCATM FSSEVQFGHA GACANQASET AVAKNQALKE bmy_16699T0/1-1104 KEGRITKPVV SWCIGTCATM FSSEVQFGHA GACANQASET AVAKNQALKE BACU007163/1-1095 KEGRITKPVV SWCIGTCATM FSSEVQFGHA GACANQASET AVAKNQALKE ENSP00000253792/1-1101 KEGRLTKPIV CWCIGTCATM FSSEVQFGHA GACANQASET AVAKNQALKE ENSBTAP00000022258/1-1091 TEGRITKPVV CWCIGTCAAM FSSEVQFGHA GACANQASET AVAKNQALKE 851 900 ENSTTRP00000006251/1-1101 AGVFVPRSFD ELGEIIQSVY EDLVARGVII PAQEVPPPTV PMDYSWAREL bmy_16699T0/1-1104 AGVFVPRSFD ELGEIIQSVY EDLVARGVII PAQEVPPPTV PMDYSWAREL BACU007163/1-1095 AGVFVPRSFD ELGEIIQSVY EDLVARGVII PAQEVPPPTV PMDYSWAREL ENSP00000253792/1-1101 AGVFVPRSFD ELGEIIQSVY EDLVANGVIV PAQEVPPPTV PMDYSWAREL ENSBTAP00000022258/1-1091 AGVFVPRSFD ELGEIIQSVY EDLVARGVIV PAQEVPPPTV PMDYSWAREL 901 950 ENSTTRP00000006251/1-1101 GLIRKPASFM TSICDERGQE LIYAGMPITE VFKEEMGIGG VLGLLWFQKR bmy_16699T0/1-1104 GLIRKPASFM TSICDERGQE LIYAGMPITE VFKEEMGIGG VLGLLWFQKR BACU007163/1-1095 GLIRKPASFM TSICDERGQE LIYAGMPITE VFKEEMGIGG VLGLLWFQKR ENSP00000253792/1-1101 GLIRKPASFM TSICDERGQE LIYAGMPITE VFKEEMGIGG VLGLLWFQKR ENSBTAP00000022258/1-1091 GLIRKPASFM TSICDERGQE LIYAGMPITE VFKEEMGIGG VLGLLWFQKR 951 1000 ENSTTRP00000006251/1-1101 LPKYSCQFIE MCLMVTADHG PAVSGAHNTI ICARAGKDLV SSLTSGLLTI bmy_16699T0/1-1104 LPKYSCQFIE MCLMVTADHG PAVSGAHNTI ICARAGKDLV SSLTSGLLTI BACU007163/1-1095 LPKYSCQFIE MCLMVTADHG PAVSGAHNTI ICARAGKDLV SSLTSGLLTI ENSP00000253792/1-1101 LPKYSCQFIE MCLMVTADHG PAVSGAHNTI ICARAGKDLV SSLTSGLLTI ENSBTAP00000022258/1-1091 LPKYSCQFIE MCLMVTADHG PAVSGAHNTI ICARAGKDLV SSLTSGLLTI 1001 1050 ENSTTRP00000006251/1-1101 GDRFGGALDA AAKMFSKAFD SGIIPMEFVN KMKKEGKLIM GIGHRVKSIN bmy_16699T0/1-1104 ---------- ---------- ---------- ---------- --------IN BACU007163/1-1095 GDRFGGALDA AAKMFSKAFD SGIIPMEFVN KMKKEGKLIM GIGHRVKSIN ENSP00000253792/1-1101 GDRFGGALDA AAKMFSKAFD SGIIPMEFVN KMKKEGKLIM GIGHRVKSIN ENSBTAP00000022258/1-1091 GDRFGGALDA AAKMFSKAFD SGIIPMEFVN KMKKEGKLIM GIGHRVKSIN 1051 1100 ENSTTRP00000006251/1-1101 NPDMRVQILK DYVRQHFPAT PLLDYALEVE KITTSK-KPN LILNVDGLIG bmy_16699T0/1-1104 NPDMRVQILK DYVRQHFPAT PLLDYALEVE KITTSKVKKK MSLMPESEFW BACU007163/1-1095 NPDMRVQILK DYVRQHFPAT PLLDYALEVE KITTSK-KPN LILNVDGLIG ENSP00000253792/1-1101 NPDMRVQILK DYVRQHFPAT PLLDYALEVE KITTSK-KPN LILNVDGLIG ENSBTAP00000022258/1-1091 NPDMRVQILK DYVRQHFPAT PLLDYALEVE KITTSK-KPN LILNVDGLIG 1101 1150 ENSTTRP00000006251/1-1101 VAFVDMLRNC GSFTREEADE YIDIGALNGI FVLGRSMGFI GHYLDQKRLK bmy_16699T0/1-1104 LNFSGKMR-- ---AREEADE YIDIGALNGI FVLGRSMGFI GHYLDQKRLK BACU007163/1-1095 VAFVDMLRNC GSFTREEADE YIDIGALNGI FVLGRSMGFI GHYLDQKRLK ENSP00000253792/1-1101 VAFVDMLRNC GSFTREEADE YIDIGALNGI FVLGRSMGFI GHYLDQKRLK ENSBTAP00000022258/1-1091 VAFVDMLRHC GSFTREEADE YIDIGALNGI FVLGRSMGFI GHYLDQKRLK 1151 1200 ENSTTRP00000006251/1-1101 QGLYRHPWDD ISYVLPEHMS M bmy_16699T0/1-1104 QGLYRHPWDD ISYVLPEHMS M BACU007163/1-1095 QGLYRHPWDD ISYVLPEHMS M ENSP00000253792/1-1101 QGLYRHPWDD ISYVLPEHMS M ENSBTAP00000022258/1-1091 QGLYRHPWDD ISYVLPEHMS M