KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:43 2014 Check: 00 .. Name: bmy_18411T0/1-656 Len: 755 Check: 7341 Weight: 1.00 Name: ENSP00000340329/1-709 Len: 755 Check: 2194 Weight: 1.00 Name: ENSBTAP00000022266/1-708 Len: 755 Check: 1820 Weight: 1.00 Name: ENSTTRP00000007321/1-665 Len: 755 Check: 516 Weight: 1.00 Name: BACU008892/1-692 Len: 755 Check: 9896 Weight: 1.00 // 1 50 bmy_18411T0/1-656 MPSATSHSGS GSKSSGPPPP SGSTGSE--A GAGAAAPASQ HPTTGTGAVQ ENSP00000340329/1-709 MPSATSHSGS GSKSSGPPPP SGSSGSEAAA GAGAAAPASQ HPATGTGAVQ ENSBTAP00000022266/1-708 MPSATSHSGS GSKSSGPPPP SGSSGNE--A GAGAAAPASQ HPMTGTGAVQ ENSTTRP00000007321/1-665 ---------- ---------- ---------- ---------- -PTTGTGAVQ BACU008892/1-692 MPSATSHSGS GSKSSGPPPP SGSTGSE--A GAGAAAPASQ HPTTGTGAVQ 51 100 bmy_18411T0/1-656 TEAMKQILGV IDKKLRNLEK KKVSPKYTFA SLYSNLGKLD DYQERMNKGE ENSP00000340329/1-709 TEAMKQILGV IDKKLRNLEK KK-------- ------GKLD DYQERMNKGE ENSBTAP00000022266/1-708 TEAMKQILGV IDKKLRNLEK KK-------- ------GKLD DYQERMNKGE ENSTTRP00000007321/1-665 -EAMKQILGV IDKK-RNLEK KK-------- ------GKLD DYQERMNKGE BACU008892/1-692 TEAMKQILGV IDKKLRNLEK KK-------- ------GKLD DYQERMNKGE 101 150 bmy_18411T0/1-656 RLNQDQLDAV SKYQEVTNNL EFAKELQRSF MALSQDIQKT IKKTARREQL ENSP00000340329/1-709 RLNQDQLDAV SKYQEVTNNL EFAKELQRSF MALSQDIQKT IKKTARREQL ENSBTAP00000022266/1-708 RLNQDQLDAV SKYQEVTNNL EFAKELQRSF MALSQDIQKT IKKTARREQL ENSTTRP00000007321/1-665 RLNQDQLDAV SKYQEVTNNL EFAKELQRSF MALSQDIQKT IKKTARREQL BACU008892/1-692 RLNQDQLDAV SKYQEVTNNL EFAKELQRSF MALSQDIQKT IKKTARREQL 151 200 bmy_18411T0/1-656 MREEAEQKRL KTVLELQYVL DKLGDDEVRT DLKQGLNGVP ILSEEELSLL ENSP00000340329/1-709 MREEAEQKRL KTVLELQYVL DKLGDDEVRT DLKQGLNGVP ILSEEELSLL ENSBTAP00000022266/1-708 MREEAEQKRL KTVLELQYVL DKLGDDEVRT DLKQGLNGVP ILSEEELSLL ENSTTRP00000007321/1-665 MREEAEQKRL KTVLELQYVL DKLGDDEVRT DLKQGLNGVP ILSEEELSLL BACU008892/1-692 MREEAEQKRL KTVLELQYVL DKLGDDEVRT DLKQGLNGVP ILSEEELSLL 201 250 bmy_18411T0/1-656 DEFYKLADPE RDMSLRYSD- ---------- ---------- ----KALKEI ENSP00000340329/1-709 DEFYKLVDPE RDMSLRLNEQ YEHASIHLWD LLEGKEKPVC GTTYKVLKEI ENSBTAP00000022266/1-708 DEFYKLADPE RDMSLRLNEQ YEHASIHLWD LLEGKEKPVC GTTYKALKEI ENSTTRP00000007321/1-665 DEFYKLADPE RDMSLRLNEQ YEHASIHLWD LLEGKEKPVC GTTYKALKEI BACU008892/1-692 DEFYKLADPE RDMSLRLNEQ YEHASIHLWD LLEGKEKPVC GTTYKALKEI 251 300 bmy_18411T0/1-656 VERVFQSNYF DSTHNHQNGL CEEEEAASAP AVEDQVAEAE PEPAEEYTEQ ENSP00000340329/1-709 VERVFQSNYF DSTHNHQNGL CEEEEAASAP AVEDQVPEAE PEPAEEYTEQ ENSBTAP00000022266/1-708 VERVFQSNYF DSTHNHQNGL CEEEEAASAP TVEDQAAEAE PEPVEEYTEQ ENSTTRP00000007321/1-665 VERVFQSNY- DSTHNHQNGL CEEEEAASAP AVEDQVAEAE PEPAEEYTEQ BACU008892/1-692 VERVFQSNYF DSTHNHQNGL CEEEEAASAP AVEDQVAEAE PEPAEEYTEQ 301 350 bmy_18411T0/1-656 SEVESTEYVN RQFMAETQFS SGEKEQVDEW TVETVEVVNS LQQQPQAASP ENSP00000340329/1-709 SEVESTEYVN RQFMAETQFT SGEKEQVDEW TVETVEVVNS LQQQPQAASP ENSBTAP00000022266/1-708 NEVESTEYVN RQFMAETQFS SGEKEQVDDW TVETVEVVNS LQQQPQAASP ENSTTRP00000007321/1-665 SEVESTEYVN RQFMAETQFS SGEKEQVDEW TVETVEVVNS LQQQPQAASP BACU008892/1-692 SEVESTEYVN RQFMAETQFS SGEKEQVDEW TVETVEVVNS LQQQPQAASP 351 400 bmy_18411T0/1-656 SVPEPHSLTP VAQADPLVRR QRVQDLMAQM QGPYNFIQDS MLDFENQTLD ENSP00000340329/1-709 SVPEPHSLTP VAQADPLVRR QRVQDLMAQM QGPYNFIQDS MLDFENQTLD ENSBTAP00000022266/1-708 SVPEPHSLTP VAQADPLVRR QRVQDLMAQM QRPYNFIQDS MLDFENQTLD ENSTTRP00000007321/1-665 SVPEPHSLTP VAQADPLVRR QRVQDLMAQM QGPYNFIQDS MLDFENQTLD BACU008892/1-692 SVPEPHSLTP VAQADPLVRR QRVQDLMAQM QGPYNFIQDS MLDFENQTLD 401 450 bmy_18411T0/1-656 PAIVSAQPMN PAQNMDIPQL VCPPVHSESR LAQPNQVSVQ PEATQLMKTR ENSP00000340329/1-709 PAIVSAQPMN PTQNMDMPQL VCPPVHSESR LAQPNQVPVQ PEATQV---- ENSBTAP00000022266/1-708 PAIVSAQPMN PAQNMDIPQL VCPPVHSESR LAQPNQVSVQ PEATQV---- ENSTTRP00000007321/1-665 PAIVSAQPMN PAQNMDIPQL VCPPVHSESR LAQPNQVSVQ PEATQV---- BACU008892/1-692 PAIVSAQPMN PAQNMDIPQL VCPPVHSESR LAQPNQVSVQ PEATQV---- 451 500 bmy_18411T0/1-656 FLWFHPQVRD IQHLNPCTSL LMLLSNDRKR NQLTRFRQVL LPGHVNLMRQ ENSP00000340329/1-709 -----PLVSS TS-------- ---------- EGYTASQPLY QPSHATEQRP ENSBTAP00000022266/1-708 -----PLVSS TS-------- ---------- EGYTASQPLY QPSHATDQRP ENSTTRP00000007321/1-665 -----PLVSS TS-------- ---------- EGYTASQPVY QPSHATEQRP BACU008892/1-692 -----PLVSS TS-------- ---------- EGYTASQPLY QPSHATEQRP 501 550 bmy_18411T0/1-656 LY--MNWVEA TISLNTDQTT ASSSLPAASQ PQVFQAGTSK PLHSSGINVN ENSP00000340329/1-709 QKEPIDQIQA TISLNTDQTT ASSSLPAASQ PQVFQAGTSK PLHSSGINVN ENSBTAP00000022266/1-708 QKEPIDQIQA TISLNTDQTT ASSSLPAASQ PQVFQAGTSK PLHSSGINVN ENSTTRP00000007321/1-665 QKEPIDQIQA TISLNTDQTT ASSSLPAASQ PQVFQAGTSK PLHSSGINVN BACU008892/1-692 QKEPIDQIQA TISLNADQTT ASSSLPAASQ PQVFQAGTSK PLHSSGINVN 551 600 bmy_18411T0/1-656 AAPFQSMQTV FNMNAPVPPV NEPETLKQQN QYQTSYNQSF SSQPHQVEQT ENSP00000340329/1-709 AAPFQSMQTV FNMNAPVPPV NEPETLKQQN QYQASYNQSF SSQPHQVEQT ENSBTAP00000022266/1-708 AAPFQSMQTV FNMNAPVPPV NEPETLKQQN QYQASYNQSF SSQPHQVEQT ENSTTRP00000007321/1-665 AAPFQSMQTV FNMNAPVPPV NEPETLKQQN QYQTSYNQSF SSQPHQVEQT BACU008892/1-692 AAPFQSMQTV FNMNAPVPPV NEPETLKQQN QYQTSYNQSF SSQPHQVEQT 601 650 bmy_18411T0/1-656 ELQQEQLQT- ---------- ---------- ---------- ---------- ENSP00000340329/1-709 ELQQEQLQTV VGTYHGSPDQ SHQVTGNHQQ PPQQNTGFPR SNQPYYNSRG ENSBTAP00000022266/1-708 ELQQEQLQTV VGTYHGSQDQ PHQVTGNHQQ PPQQNTGFPR SNQPYYNSRG ENSTTRP00000007321/1-665 ELQQEQLQTV VGTYHGSQDQ THQVTGNHQQ PPQQNTGFPR SSQPYYNSRG BACU008892/1-692 ELQQEQLQTV VGTYHGSQDQ THQVTGNHQQ PPQQNTGFPR SSQPYYNSRG 651 700 bmy_18411T0/1-656 ---------- ---------- ----GGYDGY RASFS-NTPN SGYTQSQFSA ENSP00000340329/1-709 VSRGGSRGAR GLMNGYRGPA NGFRGGYDGY RPSFS-NTPN SGYTQSQFSA ENSBTAP00000022266/1-708 VSRGGSRGAR GLMNGYRGPA NGFRGGYDGY RPSFSTNTPN SGYTQSQFSA ENSTTRP00000007321/1-665 VSRGGSRGAR GLMNGYRGPA NGFRGGYDGY RSSFS-NTPN SGYTQSQFSA BACU008892/1-692 VSRGGSRGAR GLMNGYRGPA NGFRGGYDGY RASFS-NTPN SGYTQSQFSA 701 750 bmy_18411T0/1-656 PRDYSGYQRD GYQQNFKRGS GQSGPRGAPR GRGGPPRPNR GMPQMNTQQV ENSP00000340329/1-709 PRDYSGYQRD GYQQNFKRGS GQSGPRGAPR GRGGPPRPNR GMPQMNTQQV ENSBTAP00000022266/1-708 PRDYSGYQRD GYQQNFKRGS GQSGPRGAPR GRGGPPRPNR GMPQMNTQQV ENSTTRP00000007321/1-665 PRDYSGYQRD GYQQNFKRGS GQSGPRGAPR GRGGPPRPNR GMPQMNTQQV BACU008892/1-692 PRDYSGYQRD GYQQNFKRGS GQSGPRGAPR G--------- ---------- 751 800 bmy_18411T0/1-656 N---- ENSP00000340329/1-709 N---- ENSBTAP00000022266/1-708 N---- ENSTTRP00000007321/1-665 N---- BACU008892/1-692 NILWW