KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:45 2014 Check: 00 .. Name: BACU002789/1-524 Len: 655 Check: 5979 Weight: 1.00 Name: ENSTTRP00000008799/1-583 Len: 655 Check: 8857 Weight: 1.00 Name: ENSP00000414921/1-558 Len: 655 Check: 9350 Weight: 1.00 Name: bmy_12601T0/1-470 Len: 655 Check: 4903 Weight: 1.00 Name: ENSBTAP00000022272/1-523 Len: 655 Check: 4655 Weight: 1.00 // 1 50 BACU002789/1-524 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008799/1-583 TLFPPSTGRS SREAQLAGTR SRPAAAASSL RSRWARQSPH CALLRVGHGW ENSP00000414921/1-558 MDASPSPFSL PKKLNELSAR ---------- ---------- ---------- bmy_12601T0/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022272/1-523 ---------- ---------- ---------- ---------- ---------- 51 100 BACU002789/1-524 ---------- ---------- --------MD G--------- ----APSRVL ENSTTRP00000008799/1-583 RGSDELLSSD IVNGPFTMNS STRSAGVYAN GNDNKKFKGD RPPCSPSRVL ENSP00000414921/1-558 RGSDELLSSG IINGPFTMNS STPST---AN GNDSKKFKRD RPPCSPSRVL bmy_12601T0/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022272/1-523 ---------- ---------- KKQILYFLAN GNDNKKFKGD RPLCSPSRVL 101 150 BACU002789/1-524 HIRKLPGEVT ETEVIALGLP FGKVTNILML KGKNQAFLEL ATEEAAITMV ENSTTRP00000008799/1-583 HLRKIPSDVT EAEVISLGLP FGKVTNLLML KGKSQAFLEM ASEEAAVTMV ENSP00000414921/1-558 HLRKIPCDVT EAEIISLGLP FGKVTNLLML KGKSQAFLEM ASEEAAVTMV bmy_12601T0/1-470 ---------- ---------- ---------- ---------M ASEEAAVTMV ENSBTAP00000022272/1-523 HLRKIPSDVT EAEVISLGLP FGKVTNLLML KGKSQAFLEM ASEEAAVTMV 151 200 BACU002789/1-524 NYYSAVTPHL RNQPIYIQYS NHKELKTDNT LNQ-RAQAVL QAVTAVQTAN ENSTTRP00000008799/1-583 NYYTPVTPHL RSQPVFIQYS NHRELKTDNL PNQARAQAAL QAVSAVQSGS ENSP00000414921/1-558 NYYTPITPHL RSQPVYIQYS NHRELKTDNL PNQARAQAAL QAVSAVQSGS bmy_12601T0/1-470 NYYTPVTPHL RSQPVFIQYS NHRELKTDNL PNQARAQAAL QAVSAVQSGS ENSBTAP00000022272/1-523 NYYTPVTPHL RSQPVFIQYS NHRELKTDNL PNQARAQAAL QAVSTVQSGS 201 250 BACU002789/1-524 TPLSGTTVSE SAVTPAQSPV LRIIIDNMYY PVTLDVLHQI FSKFGAVLKI ENSTTRP00000008799/1-583 LALPGAPANE GTILPGQSPV LRIIIENLFY PVTLEVLHHI FSKFGTVLKI ENSP00000414921/1-558 LALSGGPSNE GTVLPGQSPV LRIIIENLFY PVTLEVLHQI FSKFGTVLKI bmy_12601T0/1-470 LALPGAPANE GTVLHGQSPV LRIIIENLFY PVTLEVLHQI FSKFGTVLKI ENSBTAP00000022272/1-523 LALPGAPTNE GTILPGQSPV LRIIIENLFY PVTLEVLHQI FSKFGTVLKI 251 300 BACU002789/1-524 ITFTKNNQFQ ALLQYGDPVN AQQAKLALDG QNIYNACCTL RIDFSKLVNL ENSTTRP00000008799/1-583 ITFTKNNQFQ ALLQYADPLN AHYAKMALDG QNIYNACCTL RIDFSKLTSL ENSP00000414921/1-558 ITFTKNNQFQ ALLQYADPVN AHYAKMALDG QNIYNACCTL RIDFSKLTSL bmy_12601T0/1-470 ITFTKNNQFQ ALLQYADPLN AHYAKMALDG QNIYNACCTL RIDFSKLTSL ENSBTAP00000022272/1-523 ITFTKNNQFQ ALLQYADPLN AHYAKMALDG QNIYNACCTL RIDFSKLTSL 301 350 BACU002789/1-524 NVKYNNDKSR DYTRPDLPSG DGQPALDPAI A--------- ---AAFAKET ENSTTRP00000008799/1-583 NVKYNNDKSR DFTRLDLPTG DGQPSLEPPM A--------- -----FGAP- ENSP00000414921/1-558 NVKYNNDKSR DFTRLDLPTG DGQPSLEPPM A--------- ---AAFGAP- bmy_12601T0/1-470 NVKYNNDKSR DFTRLDLPTG DGQPSLEPPM AFDLFTLPLG ISTVSFSSPL ENSBTAP00000022272/1-523 NVKYNNDKSR DFTRLDLPTG DGQPSLEPPM A--------- ---AAFGAP- 351 400 BACU002789/1-524 SLLEVTAHPY DMYKKAGKRK EEIKHELMGQ QYYGPVLPRN HLERSALSRA ENSTTRP00000008799/1-583 ---GIISSPY A--------- --------GA AGFAPAI--- -----GFPQA ENSP00000414921/1-558 ---GIISSPY A--------- --------GA AGFAPAI--- -----GFPQA bmy_12601T0/1-470 GAPGIISSPY A--------- --------GA AGFAPAI--- -----GFPQA ENSBTAP00000022272/1-523 ---GIISSPY A--------- --------GA AGFAPAI--- -----GFPQA 401 450 BACU002789/1-524 AIVLKLVFVN DLCVFRKICF ILKLGLPVAA VPGALSPLAI PNAAAAAAAA ENSTTRP00000008799/1-583 T--------- ---------- --GLSVPAGL GPGALGPLAI TSSAVTGRMA ENSP00000414921/1-558 T--------- ---------- --GLSVPA-- VPGALGPLTI TSSAVTGRMA bmy_12601T0/1-470 T--------- ---------- --GLSVPAGL GPGALGPLTI TSSAVTGRMA ENSBTAP00000022272/1-523 T--------- ---------- --GLSVPAGL GPGALGPLAI TSSAVTGRMA 451 500 BACU002789/1-524 AAGRVGV--- ---------- ---------- ----YGDVQR VKILYNKKDS ENSTTRP00000008799/1-583 IPGAGGIPGN SVLLVTNLNP DLITPHGLFI LFGVYGDVHR VKIMFNKKEN ENSP00000414921/1-558 IPGASGIPGN SVLLVTNLNP DLITPHGLFI LFGVYGDVHR VKIMFNKKEN bmy_12601T0/1-470 IPGAGGIPGN SVLLVTNLNP DLITPHGLFI LFGVYGDVHR VKIMFNKKEN ENSBTAP00000022272/1-523 IPGAGGMPGN SVLLVTNLNP DLITPHGLFI LFGVYGDVHR VKIMFNKKEN 501 550 BACU002789/1-524 ALIQMADGNQ SQLAMNHLNG QKMYGKIIRV TLSKHQTVQL PREGLDDQGL ENSTTRP00000008799/1-583 ALVQMADANQ AQLAMNHLSG QRLYGKVLRA TLSKHQAVQL PREGQEDQGL ENSP00000414921/1-558 ALVQMADANQ AQLAMNHLSG QRLYGKVLRA TLSKHQAVQL PREGQEDQGL bmy_12601T0/1-470 ALVQMADANQ AQLAMNHLSG QRLYGKVLRA TLSKHQAVQL PREGQEDQGL ENSBTAP00000022272/1-523 ALVQMADANQ AQLAMNHLSG QRLYGKVLRA TLSKHQAVQL PREGQEDQGL 551 600 BACU002789/1-524 TKDFGNSPLH RFKKPGSKNF QNIFPPSATL HLSNIPPSVA EEDLRTLFAN ENSTTRP00000008799/1-583 TKDFSNSPLH RFKKPGSKNF QNIFPPSATL HLSNIPPSVT VDDLKNLFTD ENSP00000414921/1-558 TKDFSNSPLH RFKKPGSKNF QNIFPPSATL HLSNIPPSVT VDDLKNLFIE bmy_12601T0/1-470 TKDFSNSPLH RFKKPGSKNF QNIFPPSATL HLSNIPPSVT VDDLKNLFTE ENSBTAP00000022272/1-523 TKDFSNSPLH RFKKPGSKNF QNIFPPSATL HLSNIPPSVT VDDLKNLFTE 601 650 BACU002789/1-524 TGGTVKAFKF FQRDHKMALL QMATVEEAIQ ALIDLHNYNL GENHHLRVSF ENSTTRP00000008799/1-583 AGCSVKAFKF FYKLLKASM- SLGS--RGYT FILTCNSSSV STKYF----W ENSP00000414921/1-558 AGCSVKAFKF FQKDRKMALI QLGSVEEAIQ ALIELHNHDL GENHHLRVSF bmy_12601T0/1-470 AGCSVKAFKF FQKDRKMALI QLGSVEEAIQ ALIELHNHDL GENHHLRVSF ENSBTAP00000022272/1-523 AGCSVKAFKF FQKDRKMALI QLGSVEEAIQ ALIELHNHDL GENHHLRVSF 651 700 BACU002789/1-524 SKSTI ENSTTRP00000008799/1-583 TKDD- ENSP00000414921/1-558 SKSTI bmy_12601T0/1-470 SKSTI ENSBTAP00000022272/1-523 SKSTI