KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:46 2014 Check: 00 .. Name: ENSTTRP00000015135/1-1283 Len: 1295 Check: 2162 Weight: 1.00 Name: bmy_07882T0/1-1103 Len: 1295 Check: 8946 Weight: 1.00 Name: BACU002039/1-1217 Len: 1295 Check: 3503 Weight: 1.00 Name: ENSP00000358994/1-1285 Len: 1295 Check: 8418 Weight: 1.00 Name: ENSBTAP00000022276/1-1295 Len: 1295 Check: 5656 Weight: 1.00 // 1 50 ENSTTRP00000015135/1-1283 MEDGKPVWAP HPTDGFQMGN IVDIGPDSLT IEPLNQKGKT FLALINQVFP bmy_07882T0/1-1103 MEDGKPVWAP HPTDGFQMGN IVDIGPDSLT IEPLNQKGKT FLALINQVFP BACU002039/1-1217 MEDGKPVWAP HPTDGFQMGN IVDIGPDSLT IEPLNQKGKT FLALINQVFP ENSP00000358994/1-1285 MEDGKPVWAP HPTDGFQMGN IVDIGPDSLT IEPLNQKGKT FLALINQVFP ENSBTAP00000022276/1-1295 MEDGRPVWAP HPTEGFQMGN IVDIGPDSLT IEPLGQKGKT FLALINQVFP 51 100 ENSTTRP00000015135/1-1283 AEEDSKKDVE DNCSLMYLNE ATLLHNIKVR YSKDRIYTYV ANILIAVNPY bmy_07882T0/1-1103 AEEDSKKDVE DNCSLMYLNE ATLLHNIKVR YSKDRIYTYV ANILIAVNPY BACU002039/1-1217 AEEDSKKDVE DNCSLMYLNE ATLLHNIKVR YSKDRIYTYV ANILIAVNPY ENSP00000358994/1-1285 AEEDSKKDVE DNCSLMYLNE ATLLHNIKVR YSKDRIYTYV ANILIAVNPY ENSBTAP00000022276/1-1295 AEEDSKKDVE DNCSLMYLNE ATLLHNIKVR YSKDRIYTYV ANILIAVNPY 101 150 ENSTTRP00000015135/1-1283 FDIPKIYSSE TIKSYQGKSL GTMPPHVFAI XXXXXXXXXX XXXXXXXXXX bmy_07882T0/1-1103 FDIPKIYSSE TVKSYQGKSL GTMPPHVFAI ADKAFRDMKV LKMSQ----- BACU002039/1-1217 FDIPKIYSSE TIKSYQGKSL GTMPPHVFAI ADKAFRDMKV LKMSQSVIVS ENSP00000358994/1-1285 FDIPKIYSSE AIKSYQGKSL GTRPPHVFAI ADKAFRDMKV LKMSQSIIVS ENSBTAP00000022276/1-1295 FDIPKIYSSD SIKSYQGKSL GTMPPHVFAI ADKAFRDMKV LKMSQSIIVS 151 200 ENSTTRP00000015135/1-1283 XXXXXXXXXX XXXXXXYLTE SYGTGQDIDD RIVEXXXXXX XXXXXXXXXX bmy_07882T0/1-1103 ---------- ------YLTE SYGTGQDIDD RIVEANPLLE AFGNAKTVRN BACU002039/1-1217 GESGAGKTEN TKFVLRYLTE SYGTGQDIDD RIVEANPLLE AFGNAKTVRN ENSP00000358994/1-1285 GESGAGKTEN TKFVLRYLTE SYGTGQDIDD RIVEANPLLE AFGNAKTVRN ENSBTAP00000022276/1-1295 GESGAGKTEN TKFVLRYLTE SYGSGQDIDD RIVEANPLLE AFGNAKTVRN 201 250 ENSTTRP00000015135/1-1283 XXXXXXGKFV EIHFNEKSSV VGGFVSHYLL EKSRICVQGK EERNYHIFYR bmy_07882T0/1-1103 NNSSRFGKFV EIHFNEKSSV VGGFVSHYLL EKSRICVQGK EERNYHIFYR BACU002039/1-1217 NNSSRFGKFV EIHFNEK--- ---------- ---------- ---------- ENSP00000358994/1-1285 NNSSRFGKFV EIHFNEKSSV VGGFVSHYLL EKSRICVQGK EERNYHIFYR ENSBTAP00000022276/1-1295 NNSSRFGKFV EIHFNEKSSV VGGFVSHYLL EKSRICVQGK EERNYHIFYR 251 300 ENSTTRP00000015135/1-1283 LCAGASEDTR ERLHLSSPDN FRYLNRGCTR YFANKETDKH ILQNRKSPEY bmy_07882T0/1-1103 LCAGASEDTR ERLHLSSPDN FRYLNRGCTR YFANKETDKH ILQNRKSPEY BACU002039/1-1217 ---------- ---------- --YLNRGCTR YFANKETDKH ILQNRKSPEY ENSP00000358994/1-1285 LCAGASEDIR EKLHLSSPDN FRYLNRGCTR YFANKETDKQ ILQNRKSPEY ENSBTAP00000022276/1-1295 LCAGASEDIR ERLHLSSPDN FRYLNRGCTR YFANKETDKQ ILQNRKTPEH 301 350 ENSTTRP00000015135/1-1283 LKGGSLKDPL LDDHGDFIRM CTAMKKIGLD DEEKLDLFRV VAGVLHLGNI bmy_07882T0/1-1103 LKAGSLKDPL LDDHGDFIRM CTAMKKIGLD DEEKLDLFRV VAGVLHLGNI BACU002039/1-1217 LKAGSLKDPL LDDHGDFIRM CTAMKKIGLD DEEKLDLFRV VAGVLHLGNI ENSP00000358994/1-1285 LKAGSMKDPL LDDHGDFIRM CTAMKKIGLD DEEKLDLFRV VAGVLHLGNI ENSBTAP00000022276/1-1295 LKAGSLKDPL LDDHGDFVRM CTAMKKIGLD DEEKLDLFRV VAGVLHLGNI 351 400 ENSTTRP00000015135/1-1283 DFEEAGSTSG GCNLKNKSTQ SLEYCAELLG LDQDDLRVSL TTRVMLTTAG bmy_07882T0/1-1103 DFEEAGSTSG GCNLKNKSTQ SLEYCAELLG LDQDDLRVSL TTRVMLTTAG BACU002039/1-1217 DFEEAGSTSG GCNLKNKSTQ SLEYCAELLG LDQDDLRVSL TTRVMLTTAG ENSP00000358994/1-1285 DFEEAGSTSG GCNLKNKSAQ SLEYCAELLG LDQDDLRVSL TTRVMLTTAG ENSBTAP00000022276/1-1295 DFEEAGSTSG GCNLKNKSTQ SLEYCAELLG LDQDDLRVSL TTRVMLTTAG 401 450 ENSTTRP00000015135/1-1283 GTKGTVIKVP LKVEQANNAR DALAKTVYSH LFDHVVNRVN QCFPFETSSY bmy_07882T0/1-1103 GTKGTVIKVP LKVEQANNAR DALAKTVYSH LFDHVVNRVN QCFPFETSSY BACU002039/1-1217 GTKGTVIKVP LKVEQANNAR DALAKTVYSH LFDHVVNRVN QCFPFETSSY ENSP00000358994/1-1285 GTKGTVIKVP LKVEQANNAR DALAKTVYSH LFDHVVNRVN QCFPFETSSY ENSBTAP00000022276/1-1295 GTKGTVIKVP LKVEQANNAR DALAKTVYSH LFDHVVNRVN QCFPFETSSY 451 500 ENSTTRP00000015135/1-1283 FIGVLDIAGF EYFERNSFEQ FCINYCNEKL QQFFNERILK EEQELYQKEG bmy_07882T0/1-1103 FIGVLDIAGF EYFERNSFEQ FCINYCNEKL QQFFNERILK EEQELYQKEG BACU002039/1-1217 FIGVLDIAGF EYFERNSFEQ FCINYCNEKL QQFFNERILK EEQELYQKEG ENSP00000358994/1-1285 FIGVLDIAGF EYFEHNSFEQ FCINYCNEKL QQFFNERILK EEQELYQKEG ENSBTAP00000022276/1-1295 FIGVLDIAGF EYFEHNSFEQ FCINYCNEKL QQFFNERILK EEQELYQKEG 501 550 ENSTTRP00000015135/1-1283 LGVNEVHYVD NQDCIDLIEA KLAGILDILD EENRLPQPSD QHFTSEVHQK bmy_07882T0/1-1103 LGVNEVHYVD NQDCIDLIEA KLAGILDILD EENRLPQPSD QHFTSEVHQK BACU002039/1-1217 LGVNEVHYVD NQDCIDLIEA KLAGILDILD EENRLPQPSD QHFTSEVHQK ENSP00000358994/1-1285 LGVNEVHYVD NQDCIDLIEA KLVGILDILD EENRLPQPSD QHFTSAVHQK ENSBTAP00000022276/1-1295 LGVNEVHYVD NQDCIDLIEA KLMGILDILD EENRLPQPSD QHFTSAVHQK 551 600 ENSTTRP00000015135/1-1283 HKDHFRLCIP RKSKLAVHRN IRDDEGFIIR HFAGAVCYET TQFVEKNNDA bmy_07882T0/1-1103 HKDHFRLSIP RKSKLAVHRN IRDDEGFIIR HFAGA----- ---------- BACU002039/1-1217 HKDHFRLSIP RKSKLAVHRN IRDDEGFIIR HFAGAVCYET TQFVEKNNDA ENSP00000358994/1-1285 HKDHFRLTIP RKSKLAVHRN IRDDEGFIIR HFAGAVCYET TQFVEKNNDA ENSBTAP00000022276/1-1295 HKDHFRLSIP RKSKLAVHRN IRDDEGFIVR HFAGAVCYET TQFVEKNNDA 601 650 ENSTTRP00000015135/1-1283 LHMSLESLIC ESRDKFIREL FESSTNNNKD TKQKAGKLSF ISVGNKFKTQ bmy_07882T0/1-1103 ------SLIC ESRDKFVREL FESSTNNNKD TKQKAGKLSF ISVGNKFK-- BACU002039/1-1217 LHMSLESLIC ESRDKFVREL FESSTNNNKD TKQKAGKLSF ISVGNKFKTQ ENSP00000358994/1-1285 LHMSLESLIC ESRDKFIREL FESSTNNNKD TKQKAGKLSF ISVGNKFKTQ ENSBTAP00000022276/1-1295 LHMSLESLIC ESRDKFIREL FESSTNNNKD TKQKAGKLSF ISVGNKFKTQ 651 700 ENSTTRP00000015135/1-1283 LNLLLDKLRS TGASFIRCIK PNLKMTSHDF EGAQILSQLQ CSGMVSVLDL bmy_07882T0/1-1103 ---------- -GASFIRCIK PNLKMTSHDF EGAQILSQLQ CSGMVSVLDL BACU002039/1-1217 LNLLLDKLRS TGASFIRCIK PNLRMASHDF EGAQILSQLQ CSGMVSVLDL ENSP00000358994/1-1285 LNLLLDKLRS TGASFIRCIK PNLKMTSHHF EGAQILSQLQ CSGMVSVLDL ENSBTAP00000022276/1-1295 LNLLLDKLRS TGASFIRCIK PNLKMTSHDF EGAQILSQLQ CSGMVSVLDL 701 750 ENSTTRP00000015135/1-1283 MQGGFPSRAS FHELYNMYKK YMPDKLARLD PRLFCKALFK ALGLNEIDYK bmy_07882T0/1-1103 MQGGFPSRAS FHELYNMYKK YMPDKLARLD PRLFCKALFK ALGLNEIDYK BACU002039/1-1217 MQGGFPSRAS FHELYNMYKK YMPDKLARLD PRLFCKALFK ALGLNEIDYK ENSP00000358994/1-1285 MQGGYPSRAS FHELYNMYKK YMPDKLARLD PRLFCKALFK ALGLNENDYK ENSBTAP00000022276/1-1295 MQGGFPSRAS FHELYNMYKK YMPDKLARLD PRLFCKALFK ALGLNEVDYK 751 800 ENSTTRP00000015135/1-1283 FGLTKVFFRP GKFAEFDQIM KSDPDHLAEL VKRVNHWLIC SRWXXXQWCS bmy_07882T0/1-1103 FGLTKVFFRP GKFAEFDQIM KSDPDHLAEL VKRVNHWLIC SRWKKVQWCS BACU002039/1-1217 FGLTKVFFRP GKFAEFDQIM KSDPDHLAEL VKRVHHWLIC SRWKKVQWCS ENSP00000358994/1-1285 FGLTKVFFRP GKFAEFDQIM KSDPDHLAEL VKRVNHWLTC SRWKKVQWCS ENSBTAP00000022276/1-1295 FGLTKVFFRP GKFAEFDQIM KSDPDHLAQL VKRVNHWLIC SRWKKVQWCS 801 850 ENSTTRP00000015135/1-1283 LSVIKLKNKI KYRAEACIKM QKTVRMWLCK RRHKPRIDGL VKVGTLKKRL bmy_07882T0/1-1103 LSVIKLKNKI KYRAEACIKM QKTVRMWLCK RRHKPRIDGL VKVGTLKKRL BACU002039/1-1217 LSVIKLKNKI KYRAEACIKM QKTVRMWLCK RRHKPRIDGL VKVGTLKKRL ENSP00000358994/1-1285 LSVIKLKNKI KYRAEACIKM QKTIRMWLCK RRHKPRIDGL VKVGTLKKRL ENSBTAP00000022276/1-1295 LSVIKLKNKI KYRAEACIKM QKTIRMWLCK RRHKPRIDGL VKVGTLKKRL 851 900 ENSTTRP00000015135/1-1283 DKFNEVVSAL KDGKPEMNKQ VEDLEISIDA LMAKIKSTMM TREQIQNEYD bmy_07882T0/1-1103 DKFNEVVSAL KDGKPEMNKQ VKDLEISIDA LMAKIK---- ---------- BACU002039/1-1217 DKFNEVVSAL KDGKPEMNKQ VKDLEISIDA LMAKIKSTMM TREQIQKEYD ENSP00000358994/1-1285 DKFNEVVSVL KDGKPEMNKQ IKNLEISIDT LMAKIKSTMM TQEQIQKEYD ENSBTAP00000022276/1-1295 DKFNEVVSAL KDGKAEMNKQ VKDLEISIDA LMAKIKSTMM TREQIQKEYD 901 950 ENSTTRP00000015135/1-1283 ALVKSSEVLL SALQKKKQQE EEAERLRRIQ EEMEKERKRR EEDEQRRRTE bmy_07882T0/1-1103 ---------- ----KKKQQE EEAERLRRIQ EEMEKERKRR EKDEQRRRKE BACU002039/1-1217 ALVKSSEVLL SALQKKKQQE EEAERLRRIQ EEMEKERKRR EEDEQRRRKE ENSP00000358994/1-1285 ALVKSSEELL SALQKKKQQE EEAERLRRIQ EEMEKERKRR EEDEKRRRKE ENSBTAP00000022276/1-1295 ALVKSSEVLL SALQKKKQQE EEAERLRRIQ EEMEKERKRR EEDEQRRRKE 951 1000 ENSTTRP00000015135/1-1283 EEERRMKLDM EAKRKQEEEE RKKREDDEKR IQAEVEEQLA RQREEESQQQ bmy_07882T0/1-1103 EEERRMKLEM EAKRKQEEEE RKKREDDEKR IQAEVEAQLA RQREEESQQQ BACU002039/1-1217 EEERRMKLEM ETKRKQEEEE RKKREDDEKR IQAEVEAQLA RQREEESQQQ ENSP00000358994/1-1285 EEERRMKLEM EAKRKQEEEE RKKREDDEKR IQAEVEAQLA RQKEEESQQQ ENSBTAP00000022276/1-1295 EEERRMKLEM EAKRKQEEEE RKKREDDEKR IQAEVEAQLA RQREEESQQQ 1001 1050 ENSTTRP00000015135/1-1283 AVLEQERRDR ELALRIAQSE AELISDEAQV DPALRRI--- -------NGA bmy_07882T0/1-1103 AVLEQERRDR ELALRIAQSE AELISDEAQV DPAALRR--- ------INGA BACU002039/1-1217 AVLEQERRDR ELALRIAQSE AELISDEAQV DPALRSQ--- ---------H ENSP00000358994/1-1285 AVLEQERRDR ELALRIAQSE AELISDEAQA DLALRRN--- -------DGT ENSBTAP00000022276/1-1295 AVLEQERRDR ELALRIARSE AELIIDEAQA DPAALRSLDF HPVTSKINGT 1051 1100 ENSTTRP00000015135/1-1283 GPRMTPEQMA KEMSEILSRG PAVQATKAAA GTKKHDLSKW KYAELRDTIN bmy_07882T0/1-1103 GPKITPEQMA KEMSEILSRG PAVQATKAAA GTKKHDLSKW KYAELRDTIN BACU002039/1-1217 FIRVSKFKYA KMCDNY--RG PAVQATKAAA GTKKYDLSKW KYAELRDTIN ENSP00000358994/1-1285 RPKMTPEQMA KEMSEFLSRG PAVLATKAAA GTKKYDLSKW KYAELRDTIN ENSBTAP00000022276/1-1295 RRTMTPEQMA KEMSEILSRG PAVQATKAAA GTKKHDLSKW KYAELRDTIN 1101 1150 ENSTTRP00000015135/1-1283 TSCDIELLAA CREEFHRRLK VYHAWKSKNK KRNTETEQRA PKSVTDYDFA bmy_07882T0/1-1103 TSCE------ ---------- -------HSK RLCSENPTQL PK----YNFI BACU002039/1-1217 TSCDIELLAA CREEFHRRLK VYHAWKSKNK KRNTETEQRA PKSVTDYA-- ENSP00000358994/1-1285 TSCDIELLAA CREEFHRRLK VYHAWKSKNK KRNTETEQRA PKSVTDYDFA ENSBTAP00000022276/1-1295 TSCDIELLAA CREEFHRRLK VYHAWKSKNK KRNTETEQRA PKSVTDYDFA 1151 1200 ENSTTRP00000015135/1-1283 PFLNNSPQQT PAAQLPARQH GIEMR--QRF FRIPXXXXXX XXXXXXXXXX bmy_07882T0/1-1103 SHIS------ ---------- ----RRSHPR LSIGFLNFTQ ---------- BACU002039/1-1217 -------QQN PAAQLPARQQ GIEMNRQQRF FRIPFIRPAD QYKDPQNKKK ENSP00000358994/1-1285 PFLNNSPQQN PAAQIPARQR EIEMNRQQRF FRIPFIRPAD QYKDPQSKKK ENSBTAP00000022276/1-1295 PFLNNSPQQN PAAQLPARQQ EIEMNRQQRF FRIPFIRPAD QYKDPQNKKK 1201 1250 ENSTTRP00000015135/1-1283 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX KDDMEMCELN LEETGLTRKR bmy_07882T0/1-1103 ---YIKLQG- ---------- -----IVILK EKNFELVYF- ---------- BACU002039/1-1217 GWWYAHFDGP WIARQLELHP DKPPILLVAG KDDMEMCELN LEETGLTRKC ENSP00000358994/1-1285 GWWYAHFDGP WIARQMELHP DKPPILLVAG KDDMEMCELN LEETGLTRKR ENSBTAP00000022276/1-1295 GWWYAHFDGP WIARQMELHP DKPPILLVAG KDDMEMCELN LEETGLTRKR 1251 1300 ENSTTRP00000015135/1-1283 GAEILPRQFE EIWERCGGIQ YLQKAIESRQ ARPTYATAML QNLLK bmy_07882T0/1-1103 ------RQSI YSFANCFLLS LNQLAKEKT- ----FVFHFF EKL-- BACU002039/1-1217 GAEILPRRFE EIWERCGGIQ YLQKAIESRQ ARPTYATAML QNLLK ENSP00000358994/1-1285 GAEILPRQFE EIWERCGGIQ YLQNAIESRQ ARPTYATAML QSLLK ENSBTAP00000022276/1-1295 GAEILPRQFE EIWERCGGIQ YLQSAIESRQ ARPTYATAML QNLLK