KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:50 2014 Check: 00 .. Name: bmy_09099T0/1-701 Len: 728 Check: 5092 Weight: 1.00 Name: ENSP00000388658/1-678 Len: 728 Check: 3930 Weight: 1.00 Name: ENSBTAP00000022292/1-675 Len: 728 Check: 9224 Weight: 1.00 Name: BACU010125/1-676 Len: 728 Check: 7165 Weight: 1.00 Name: ENSTTRP00000010777/1-677 Len: 728 Check: 9719 Weight: 1.00 // 1 50 bmy_09099T0/1-701 MAVKVQTTKR GDPQELRNIF LQYASTEVNG EHYMTPEDFV QRYLGLYNDP ENSP00000388658/1-678 MAVKVQTTKR GDPHELRNIF LQYASTEVDG ERYMTPEDFV QRYLGLYNDP ENSBTAP00000022292/1-675 MAVK--TTKR GDPQELRNIF LQYASTEVDG EHYMTPEDFV QRYLGLYNDP BACU010125/1-676 MAVKVQTTKR GDPQELRNIF LQYASTEVNG EHYMTPEDFV QRYLGLYNDP ENSTTRP00000010777/1-677 MAVKVQTTKR GDPQELRNIF LQYATTEVNG EHYMTPEDFV QRYLGLYNDP 51 100 bmy_09099T0/1-701 NSNPKIVQLL AGVADQTKDG RTTLL----- -------TDC TVVPFG---- ENSP00000388658/1-678 NSNPKIVQLL AGVADQTKDG LISYQEFLAF ESVLCAPDSM FIVAFQLFDK ENSBTAP00000022292/1-675 NSNPKIVQLL AGVADQTKDG LISYQEFLAF ESVLCAPDSM FIVAFQLFDK BACU010125/1-676 NSNPKIVQLL AGVADQTKDG LISYQEFLAF ESVLCAPDSM FIVAFQLFDK ENSTTRP00000010777/1-677 NSNPKIVQLL AGVADQTKDG LISYQEFLAF ESVLCAPDSM FIVAFQLFDK 101 150 bmy_09099T0/1-701 --------EN VKEIFGQTTV HHHIPFNWDC EFIRLHFGHN RKKHLNYTEF ENSP00000388658/1-678 SGNGEVTFEN VKEIFGQTII HHHIPFNWDC EFIRLHFGHN RKKHLNYTEF ENSBTAP00000022292/1-675 SGNGEVTFEN VKEIFGQTTI HHHIPFNWDC EFIRLHFGHN RKKHLNYTEF BACU010125/1-676 SGNGEVTFEN VKEIFGQTTI HHHIPFNWDC EFIRLHFGHN RKKHLNYTEF ENSTTRP00000010777/1-677 SGNGEVTFEN VKEIFGQTTI HHHIPFNWDC EFIRLHFGHN RKKHLNYTEF 151 200 bmy_09099T0/1-701 TQFLQELQLE HARQAFALKD KSKSGMISGL DFSDIMVTIR SHMLTPFVEE ENSP00000388658/1-678 TQFLQELQLE HARQAFALKD KSKSGMISGL DFSDIMVTIR SHMLTPFVEE ENSBTAP00000022292/1-675 TQFLQELQLE HARQAFALKD KSKSGLISGL DFSDIMVTIR SHMLTPFVEE BACU010125/1-676 TQFLQELQLE HARQAFALKD KSKSGMISGL DFSDIMVTIR SHMLTPFVEE ENSTTRP00000010777/1-677 TQFLQELQLE HARQAFALKD KSKSGMISGL DFSDIMVTIR SHMLTPFVEE 201 250 bmy_09099T0/1-701 NLVSAAGGSI SHQVSFSYFN AFNSLLNNME LVRKIYSTLA GTRKDVEVTK ENSP00000388658/1-678 NLVSAAGGSI SHQVSFSYFN AFNSLLNNME LVRKIYSTLA GTRKDVEVTK ENSBTAP00000022292/1-675 NLVSAAGGSI SHQVSFSYFN AFNSLLNNME LVRKIYSTLA GTRKDVEVTK BACU010125/1-676 NLVSAAGGSI SHQVSFSYFN AFNSLLNNME LVRKIYSTLA GTRKDVEVTK ENSTTRP00000010777/1-677 NLVSAAGGSI SHQVSFSYFN AFNSLLNNME LVRKIYSTLA GTRKDVEVTK 251 300 bmy_09099T0/1-701 EEFAQNAIRY GQVTPLEIDI LYQLADLYNA TGRLTLADIE RIAPLAEAAL ENSP00000388658/1-678 EEFAQSAIRY GQVTPLEIDI LYQLADLYNA SGRLTLADIE RIAPLAEGAL ENSBTAP00000022292/1-675 EEFAQSAIRY GQVTPLEIDI LYQLSDLYNA TGRLTLADIE RIAPLAEGAL BACU010125/1-676 EEFAQNAIRY GQVTPLEIDI LYQLADLYNA TGRLTLADIE RIAPLAEAAL ENSTTRP00000010777/1-677 EEFAQSAIRY GQVTPLEIDI LYQLADLYNA TGRLTLADIE RIAPLAEAAL 301 350 bmy_09099T0/1-701 PYNLAELQRQ QSHSLGRPIW LQIAESAYRF TLGSVAGAVG ATAVYPIDLV ENSP00000388658/1-678 PYNLAELQRQ QSPGLGRPIW LQIAESAYRF TLGSVAGAVG ATAVYPIDLV ENSBTAP00000022292/1-675 PYNLAELQRQ QSHGLGRPIW LQIAESAYRF TLGSVAGAVG ATAVYPIDLV BACU010125/1-676 PYNLAELQRQ QSHSLGRPIW LQIAESAYRF TLGSVAGAVG ATAVYPIDLV ENSTTRP00000010777/1-677 PYNLAELQRQ QSHSLGRPVW LQIAESAYRF TLGSVAGAVG ATAVYPIDLV 351 400 bmy_09099T0/1-701 KTRMQNQRGT GSVVGELMYK NSFDCFKKVL RYEGFFGLYR GSIICGKIRV ENSP00000388658/1-678 KTRMQNQRGS GSVVGELMYK NSFDCFKKVL RYEGFFGLYR G--------- ENSBTAP00000022292/1-675 KTRMQNQRGT GSVVGELMYK NSFDCFKKVL RYEGFFGLYR G--------- BACU010125/1-676 KTRMQNQRGT GSVVGELMYK NSFDCFKKVL RYEGFFGLYR G--------- ENSTTRP00000010777/1-677 KTRMQNQRGT GSVVGELMYK NSFDCFKKVL RYEGFFGLYR G--------- 401 450 bmy_09099T0/1-701 YLTETLQSFS KHTALASLKR LCLIPQLIGV APEKAIKLTV NDFVRDKFTR ENSP00000388658/1-678 ---------- ---------- --LIPQLIGV APEKAIKLTV NDFVRDKFTR ENSBTAP00000022292/1-675 ---------- ---------- --LIPQLIGV APEKAIKLTV NDFVRDKFTR BACU010125/1-676 ---------- ---------- --LIPQLIGV APEKAIKLTV NDFVRDKFTS ENSTTRP00000010777/1-677 ---------- ---------- --LIPQLIGV APEKAIKLTV NDFVRDKFTR 451 500 bmy_09099T0/1-701 RDGSIPLLAE VLAGGCAGGS QVIFTNPLEI VKIRLQVAGE ITTGPRVSAL ENSP00000388658/1-678 RDGSVPLPAE VLAGGCAGGS QVIFTNPLEI VKIRLQVAGE ITTGPRVSAL ENSBTAP00000022292/1-675 RDGSIPLLAE ILAGGCAGGS QVIFTNPLEI VKIRLQVAGE ITTGPRVSAL BACU010125/1-676 RDGSIPLLAE VLAGGCAGGS QVIFTNPLEI VKIRLQVAGE ITTGPRVSAL ENSTTRP00000010777/1-677 RDGSIPLLAE VLAGGCAGGS QVIFTNPLEI VKIRLQVAGE ITTGPRVSAL 501 550 bmy_09099T0/1-701 NVLRDLGLFG LYKAFMKLPA GMPALQTRWL QAHSLLFDGS SKEQSNHGQV ENSP00000388658/1-678 NVLRDLGIFG LYK------- GAKACFLRDI PFSAIYF--- --------PV ENSBTAP00000022292/1-675 NVLRDLGLFG LYK------- GAKACFLRDI PFSAIYF--- --------PV BACU010125/1-676 NVLRDLGLFG LYK------- GAKACFLRDI PFSAIYF--- --------PV ENSTTRP00000010777/1-677 NVLRDLGLFG LYK------- GAKACFLRDI PFSAIYF--- --------PV 551 600 bmy_09099T0/1-701 FCQCLMEPSK HFHGTVSTSF L--PXDIRCV PAASLVTPAD VIKTRLQVAA ENSP00000388658/1-678 YAHCKLLLAD E-NGHVGGLN LLAAGAMAGV PAASLVTPAD VIKTRLQVAA ENSBTAP00000022292/1-675 YAHCKLLLAD E-NGHVGGIN LLAAGAMAGV PAASLVTPAD VIKTRLQVAA BACU010125/1-676 YAHCKLLLAD E-NGHVGGIY LLAAGAMAGV PAASLVTPAD VIKTRLQVAA ENSTTRP00000010777/1-677 YAHCKLLLAD E-HGHVGGIY LLTAGAMAGV PAASLVTPAD VIKTRLQVAA 601 650 bmy_09099T0/1-701 RAGQTTYSGV IDCFRKILRE EGPSAFWKGT AARVFRSSPQ FGVTLVTYEL ENSP00000388658/1-678 RAGQTTYSGV IDCFRKILRE EGPSAFWKGT AARVFRSSPQ FGVTLVTYEL ENSBTAP00000022292/1-675 RAGQTTYSGV IDCFRKILRE EGPSAFWKGT AARVFRSSPQ FGVTLVTYEL BACU010125/1-676 RAGQTTYSGV IDCFRKILRE EGPSAFWKGT AARVFRSSPQ FGVTLVTYEL ENSTTRP00000010777/1-677 RAGQTTYSGV IDCFRKILRE EGPSAFWKGT AARVFRSSPQ FGVTLVTYEL 651 700 bmy_09099T0/1-701 LQRWFYIDFG GLKPSGSEPT PKSRIADLPP ANPDHIGGYR LATATFAGIE ENSP00000388658/1-678 LQRWFYIDFG GLKPAGSEPT PKSRIADLPP ANPDHIGGYR LATATFAGIE ENSBTAP00000022292/1-675 LQRWFYIDFG GLKPSGSEPT PKSRIADLPP ANPDHIGGYR LATATFAGIE BACU010125/1-676 LQRWFYIDFG GLKPSGSEPT PKSRIADLPP ANPDHIGGYR LATATFAGVE ENSTTRP00000010777/1-677 LQRWFYIDFG GLKPSGSEPT PKSRIADLPP ANPDHIGGYR LATATFAGIE 701 750 bmy_09099T0/1-701 NKFGLYLPKF KPPSVAVVQP KVAAAAQ- ENSP00000388658/1-678 NKFGLYLPKF KSPSVAVVQP KAAVAATQ ENSBTAP00000022292/1-675 NKFGLYLPKF KPPSVAVVQP KVAAAAQ- BACU010125/1-676 NKFGLYLPKF KPPSVAVVQP KVAAAQ-- ENSTTRP00000010777/1-677 NKFGLYLPKF KPPSVAVAQP KVAAAAQ-