KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:52 2014 Check: 00 .. Name: ENSBTAP00000022302/1-215 Len: 305 Check: 6324 Weight: 1.00 Name: ENSP00000376523/1-215 Len: 305 Check: 6925 Weight: 1.00 Name: ENSTTRP00000010570/1-215 Len: 305 Check: 6189 Weight: 1.00 Name: bmy_10896T0/1-274 Len: 305 Check: 2914 Weight: 1.00 Name: BACU017375/1-156 Len: 305 Check: 4031 Weight: 1.00 // 1 50 ENSBTAP00000022302/1-215 MPAFNRLFPL ASLLLILWVG VCFPVCVEVP SETEAVQGNP MKLRCISCMK ENSP00000376523/1-215 MPAFNRLFPL ASLVLIYWVS VCFPVCVEVP SETEAVQGNP MKLRCISCMK ENSTTRP00000010570/1-215 MPGFNRLFPL ASLLLILWAG VCSPVCVEVP SETEAVQGNP MKLRCISCMK bmy_10896T0/1-274 MPDFNRLFPL ASLLLILWAG VCFPVCVEVP SETEAVQGNP MKLRCISCMK BACU017375/1-156 ---------- ---------- ---------- ---------- MKLRCISCMK 51 100 ENSBTAP00000022302/1-215 REEVEATTVV EWFYRPEGGK DFL------- ---------- ---------- ENSP00000376523/1-215 REEVEATTVV EWFYRPEGGK DFL------- ---------- ---------- ENSTTRP00000010570/1-215 REDVEATTVV EWFYRPEGGK DFL------- ---------- ---------- bmy_10896T0/1-274 REDVEATTVV EWFYRPEGGK DFLPFFPAHP FLPCPRALTP VCLCLSFPIL BACU017375/1-156 REDVEATTVV EWFYRPEGGK DFL------- ---------- ---------- 101 150 ENSBTAP00000022302/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000376523/1-215 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010570/1-215 ---------- ---------- ---------- ---------- ---------- bmy_10896T0/1-274 LSSLPSSEPP IPLPHLGAPG NIVSVPASEH HSGPFLCPVP TSTLSSLLLP BACU017375/1-156 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000022302/1-215 ------IYEY RNGHQEVESP FQGRLQWNGS KDLQDVSITV LNVTLNDSGL ENSP00000376523/1-215 ------IYEY RNGHQEVESP FQGRLQWNGS KDLQDVSITV LNVTLNDSGL ENSTTRP00000010570/1-215 ------IYEY RNGHQEVESP FQGRLQWNGS KDLQDVSITV LNVTLNDSGL bmy_10896T0/1-274 LLLYLQIYEY RNGHQEVESP FQGRLQWNGS KDLQDVSITV LNVTLNDSGL BACU017375/1-156 ------IYEY RNGHQEVESP FQGRLQWNGS KDLQDVSITV LNVTLNDSGL 201 250 ENSBTAP00000022302/1-215 YTCNVSREFE FEAHRPFVKT TRLIPLRVTE EAGEDFTSVV SEIMMYILLV ENSP00000376523/1-215 YTCNVSREFE FEAHRPFVKT TRLIPLRVTE EAGEDFTSVV SEIMMYILLV ENSTTRP00000010570/1-215 YTCNVSREFE FEAHRPFVKT TRLIPLRVTE EAGEDFTSVV SEIMMYILLV bmy_10896T0/1-274 YTCNVSREFE FETHRPFVKT TRLIPLRVTE EAGEDFTSVV SEIMMYILLV BACU017375/1-156 YTCNVSREFE FETHRPFVKT TRLIPLRVTE EAGEDFTSVV SEIMMYILLV 251 300 ENSBTAP00000022302/1-215 FLTLWLLIEM IYCYRKVSKA EEAAQENASD YLAIPSENKE NSAVPVEE-- ENSP00000376523/1-215 FLTLWLLIEM IYCYRKVSKA EEAAQENASD YLAIPSENKE NSAVPVEE-- ENSTTRP00000010570/1-215 FLTLWLLIEM IYCYRKVSKA EEAAQENASD YLAIPSENKE NSAVPVEE-- bmy_10896T0/1-274 FLTL------ ---------- --------SD YLAIPSENKE NSAVPVEE-- BACU017375/1-156 FLTL------ ---------- ---------- WLLIEMIYCY RKVSKAEEAA 301 350 ENSBTAP00000022302/1-215 ----- ENSP00000376523/1-215 ----- ENSTTRP00000010570/1-215 ----- bmy_10896T0/1-274 ----- BACU017375/1-156 QENAC