KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:53 2014 Check: 00 .. Name: ENSP00000218348/1-963 Len: 1039 Check: 4230 Weight: 1.00 Name: ENSBTAP00000022310/1-910 Len: 1039 Check: 6754 Weight: 1.00 Name: ENSTTRP00000013010/1-952 Len: 1039 Check: 6169 Weight: 1.00 Name: bmy_18397T0/1-984 Len: 1039 Check: 8976 Weight: 1.00 Name: BACU010361/1-917 Len: 1039 Check: 8347 Weight: 1.00 // 1 50 ENSP00000218348/1-963 MAVAPRLFGG LCFRFRDQNP EVAVEGRLPI SHSCVGCRRE RTAMATVAAN ENSBTAP00000022310/1-910 ---------- ---------- ---------- ---------- ---MAAVAAN ENSTTRP00000013010/1-952 MAVAPRLFGG LCFRFRGQKP EVAFMGTFPI P-SCDDCRGG RTAMAAVAES bmy_18397T0/1-984 ---------- ---------- ---------- ------MRGG RTAMAAVAES BACU010361/1-917 ---------- ---------- ---------- ---------- ---MAAVAES 51 100 ENSP00000218348/1-963 PAAAAAAVAA AAAVTEDREP QHEELPGLDS QWRQIENGES GRERPLRAGE ENSBTAP00000022310/1-910 PADTAATAV- -----DHRKP QREKVPGLES QRRQIEN--- GRRRPLRVGE ENSTTRP00000013010/1-952 PAAAAAA--- -----EDREP QRKAVPGLES QRRQIENGEN GRGHPLRAGE bmy_18397T0/1-984 PAAAAAA--- -----EDREP QREAVPGLES QRRQIENSEN GRGPPLRAGE BACU010361/1-917 PAAAAAA--- -----EDREP QREAVPGLES QRRQIENGEN GRGPPLRTGE 101 150 ENSP00000218348/1-963 SWFLVEKHWY KQWEAYVQGG DQDSSTFPGC INNATLFQDE INWRLKEGLV ENSBTAP00000022310/1-910 SWFLVGHHWY KQWEVYVRGG NQDSSTFPGC INNAELFEDQ VNWRLKKGLV ENSTTRP00000013010/1-952 SWFLVEQHWY KQWEVYVQGG DQDPSTFPGC INNAELFEDQ VNWRLKKGLV bmy_18397T0/1-984 SWFLVEQHWY KQWEVHVQGG GQDPSTFPGC INNAELFEDQ VNWRLKKGLV BACU010361/1-917 SWFLVERHWY KQWEVHVQGG GQDPSTFPGC INNAELFEDQ VNWRLKKGLV 151 200 ENSP00000218348/1-963 EGEDYVLLPA AAWHYLVSWY GLEHGQPPIE RKVI------ ---------- ENSBTAP00000022310/1-910 EGEDYVLLPA AAWHYLVNWY GLEHGQPPIE RKVV------ ---------- ENSTTRP00000013010/1-952 EGEDYVLLPA AAWHYLVNWY GLEHGQPPIE RKVV------ ---------- bmy_18397T0/1-984 EGEDYVLLPA AAWHYLVNWY GLEHGQPPIE RKVIRRYLAV SPAFARLCML BACU010361/1-917 EGEDYVLLPA AAWHYLVSWY GLEHGQPPIE RKVV------ ---------- 201 250 ENSP00000218348/1-963 -------ELP NIQKVEVYPV ELLLVRHNDL GKSHTVQFSH TDSI------ ENSBTAP00000022310/1-910 -------ELP STHKVEVYSV ELLLVRHSDM DTPHTAQFSQ TDSV------ ENSTTRP00000013010/1-952 -------ELS NIQKVEVYPV ELLLIQHSDM DTAHTAQFSR TDSV------ bmy_18397T0/1-984 PSQNLVVELS SIQKVEVYPV ELLLIQHSDM DTAHTAQFNR TDSIGESKGR BACU010361/1-917 -------ELS SIQKVEVYPV ELLLIQHSDM DTAHPAQFNR TDSI------ 251 300 ENSP00000218348/1-963 ---------- ---------- ---------- ---------- GLVLRTARER ENSBTAP00000022310/1-910 ---------- ---------- ---------- ---------- DLVLHTAREQ ENSTTRP00000013010/1-952 ---------- ---------- ---------- ---------- DLVLRTAQEQ bmy_18397T0/1-984 GMSWHSQPRS QLGDLRSLMP RWMDPPGFQE DLECAPSPST DLVLRTAQEQ BACU010361/1-917 ---------- ---------- ---------- ---------- DLVLRTAQEQ 301 350 ENSP00000218348/1-963 FLVEPQEDTR LWAKNSEGSL DRLYDTHITV LDAALETGQL IIMETRKKDG ENSBTAP00000022310/1-910 FLVSPQEETR LWIKNAEGSF ERLCNTRVTV LDAALKTGQV VVMETRNKDG ENSTTRP00000013010/1-952 FLVSPQEETR LWIKNAEGSF ERLCNTRVTV LDAALKTGQV VIMETRNKDG bmy_18397T0/1-984 FLVSPQEETR LWIKNAEGSF ERLCNTRVTV LDAALQTGQV VIMETRNKDG BACU010361/1-917 FLVSPQEETR LWIKNAEGSF ERLCNTRVTV LDAALQTGQV VIMETRNKDG 351 400 ENSP00000218348/1-963 TWPSAQLHVM NNNMSEEDED FKGQPGICGL TNLGNTCFMN SALQCLSNVP ENSBTAP00000022310/1-910 TWPSAQPHDT RST-LEEEED FQGQPGICGL TNLGNTCFMN SALQCLSNVP ENSTTRP00000013010/1-952 TWPSAQLPAM SSA-SEEDED FQGQPGICGL TNLGNTCFMN SALQCLSNVP bmy_18397T0/1-984 TWPSAQLPAM SST-SEEDED FQGQPGICGL TNLGNTCFMN SALQCLSNVP BACU010361/1-917 TWPSAQLPAM SST-SEEDED FQGQPGICGL TNLGNTCFMN SALQCLSNVP 401 450 ENSP00000218348/1-963 QLTEYFLNNC YLEELNFRNP LGMKGEIAEA YADLVKQAWS GHHRSIVPHV ENSBTAP00000022310/1-910 QLTEYFLKNR YLEELNFCNP LGMKGEIAQA YADLVKQAWS GHHRSIVPQV ENSTTRP00000013010/1-952 QLTNYFLKNR Y-EELNFCNP LGMK-EIAEA YADLXXXXXX XXXXXXXXXX bmy_18397T0/1-984 QLTNYFLKNR YLEELNFCNP LGMKGEIAEA YADLVKQAWS GHHRSIVPHV BACU010361/1-917 QLTNYFLKNR YLEELNFCNP LGMKGEIAEA YADLVKQAWS GHHRSIVPHV 451 500 ENSP00000218348/1-963 FKNKVGHFAS QFLGYQQHDS QELLSFLLDG LHEDLNRVKK KEYVELCDAA ENSBTAP00000022310/1-910 FKTKVGHFAS QFLGYQQHDS QELLSFLLDG LHEDLNRIKK KEYVELCDAA ENSTTRP00000013010/1-952 XXXXXXXFAS QFLGYQQHDS QELLSFLLDG LHEDLNRVKK KEYVELCDAA bmy_18397T0/1-984 FKTKVGHFAS QFLGYQQHDS QELLSFLLDG LHEDLNRVKK KEYVELCDAA BACU010361/1-917 FKTKVGHFAS QFLGYQQHDS QELLSFLLDG LHEDLNRVKK KEYVELCDAA 501 550 ENSP00000218348/1-963 GRPDQEVAQE AWQNHKRRND SVIVDTFHGL FKSTLVCPDC GNVSVTFDPF ENSBTAP00000022310/1-910 GRPDQEVAQE AWQNHKRRND SVIVDTFHGL FKSTLVCPDC GNVSVTFDPF ENSTTRP00000013010/1-952 GRPDQEVAQE AWQNHKRRND SVIVDTFHGL FKSTVVCPDC GNVSVTFDPF bmy_18397T0/1-984 GRPDQEVAQE AWQNHKRRND SVIVDTFHGL FKSTVVCPDC GNVSVTFDPF BACU010361/1-917 GRPDQEVARE AWQNHRRRND SVIVDTFHGL FKSTVVCPDC GNVSVTFDPF 551 600 ENSP00000218348/1-963 CYLSVPLPIS HKRVLEVFFI PMDPRRKPEQ HRLVVPKKGK ISDLCVALSK ENSBTAP00000022310/1-910 CYLSVPLPVS HKRVMEVFFV SMDPRRKPEQ HRLVVPKKGK ISDLCVALAK ENSTTRP00000013010/1-952 CYLSVPLPMT HKRVMEVFFV SMDPRRKPEQ HRLVVPKKGK ISDLCVALAK bmy_18397T0/1-984 CYLSVPLPVT HKRVMEVFFV SMDPRRKPEQ HRLVVPKRGK ISDLCVALAK BACU010361/1-917 CYLSVPLPVT HKRVMEVFFV SMDPRRKPEQ HRLVVPKRGK ISDLCVALAK 601 650 ENSP00000218348/1-963 HTGISPERMM VADVFSHRFY KLYQLEEPLS SILDRDDIFV YEVSGRIEAI ENSBTAP00000022310/1-910 HTGISPERMM VADVFSHRFY KIYQLEESLS SILDRDDIFI YEVSGRAAIG ENSTTRP00000013010/1-952 HTGVSPERMM VADVFSHRFY KIYQLEESLS SILDRDDIFI YEVSGRAAIG bmy_18397T0/1-984 HTGVSPERMM VADVFSHRFY KIYQLEESLS SILDRDDIFI YEVSGRAAIG BACU010361/1-917 HTGVSPERMM VADVFSHRFY KIYQLEESLS SILDRDDIFI YEVSGRAAIG 651 700 ENSP00000218348/1-963 EGSREDIVVP VYLRERTPAR DYNNSYYGLM LFGHPLLVSV PRDRFTWEGL ENSBTAP00000022310/1-910 ENSREDVVLP IYLRERTPAR DYNSSYYGLM LFGHPLLVSV PRDRLSWDAL ENSTTRP00000013010/1-952 ENSREDVVLP IYLRERTPAR DYNNSYYGLM LFGHPLLVSV PRDRLSWDAL bmy_18397T0/1-984 ENSREDVVLP IYLRERTPAR DYNNSYYGLM LFGHPLLVSV PRDRLSWDAL BACU010361/1-917 ENSREDVVLP IYLRERTPAR DYNNSYYGLM LFGHPLLVSV PRDRLSWDAL 701 750 ENSP00000218348/1-963 YNVLMYRLSR YVTKPNSDDE DDGDEKEDDE EDKDDVPGPS --TGGSLRDP ENSBTAP00000022310/1-910 YHILLYRLSR YVTRPSSDDE DDGDEK--DL EDKDRLPKPG RVTAGSSQDP ENSTTRP00000013010/1-952 YHILLYRLSR YVTRPSSDDE DDGDEKA-DL EDKDNLPKAG HVAGGSSQDP bmy_18397T0/1-984 ---------R YVTRPSSDDE DDGDEKA-DL EDKDNLPKPG HVAGGSSQDP BACU010361/1-917 YHILLYRLSR YVTRPSSDDE DDGDEKA-DL EDKDNLPKPG HVAGGSSQDP 751 800 ENSP00000218348/1-963 EPEQAGPSSG VTNRCPFLLD NCLGTSQWPP RRRRKQLFTL QTVNSNGTSD ENSBTAP00000022310/1-910 GLEQAGPSSR VVSRSRAPVD NSPGPSHWPQ RARRKHLFTL HTVNSNGTSD ENSTTRP00000013010/1-952 GPEQAGPSSG VAGGSRAPVD NSPGPSHWPQ RARRKHLFTL QTVNSNGTSD bmy_18397T0/1-984 GPEQAGPSSG VAGGSRAPVD NSPGPSHWPQ RARRKHLFTL QTVNSNGTSD BACU010361/1-917 GPEQAGPSSG VAGGSRAPVD NSPGPSHWPQ RARRKHLFTL QTVNSNGTSD 801 850 ENSP00000218348/1-963 RTTSPEEVH- ----AQPYIA IDWEPEMKKR YYDEVEAEGY VKHDCVGYVM ENSBTAP00000022310/1-910 RSTFNEDTH- ----AQPYIA IDWEPEMKKR YYDEVEAEGY VKHDCVGYVL ENSTTRP00000013010/1-952 RSTFNEDTH- ----AQPYIA IDWEPEMKKR YYDEVEAEGY VKHDCVGYVL bmy_18397T0/1-984 RSTFNEDTHG VSFSSQPYIA IDWEPEMKKR YYDEVEAEGY VKHDCVGYVL BACU010361/1-917 RSTFNEDTHG VSFSSQPYIA IDWEPEMKKR YYDEVEAEGY VKHDCVGYVL 851 900 ENSP00000218348/1-963 KKAPVRLQEC IELFTTVETL EKENPWYCPS CKQHQLATKK LDLWMLPEIL ENSBTAP00000022310/1-910 KKAPVQLQEC IELFTTVETL EKENPWYCPT CKQHQLATKK LDLWMLPETL ENSTTRP00000013010/1-952 KKAPVRLQEC IELFTTTETL EKENPWYCPN CKQHQLATKK LDLWMLPETL bmy_18397T0/1-984 KKAPVRLQEC IELFTTTETL EKENPWYCPN CKQHQLATKK LDLWMLPETL BACU010361/1-917 KKAPVRLQEC IELFTTTETL EKENPWYCPN CKQHQLATKK LDLWMLPETL 901 950 ENSP00000218348/1-963 IIHLKRFSYT KFSREKLDTL VEFPIRDLDF SEFVIQPQNE SNPELYKYDL ENSBTAP00000022310/1-910 IIHLKRFSYT KFSREKLDTL VEFPIRDLDF SEFVIKPQND SSRELYKYDL ENSTTRP00000013010/1-952 IIHLKRFSYT KFSREKLDTL VEFPIRDLDF SKFVIKPQNE SAPELYKYDL bmy_18397T0/1-984 IIHLKRFSYT KFSREKLDTL VEFPIRDLDF SKFVIKPQNK SAPELYKYDL BACU010361/1-917 IIHLKRFSYT KFSQEKLDTL VEFPIRDLDF SKFVVKPQNE SAPELYKYDL 951 1000 ENSP00000218348/1-963 IAVSNHYGGM RDGHYTTFAC NKDSGQWHYF DDNSVSPVNE NQIESKAAYV ENSBTAP00000022310/1-910 IAVSNHYGGL RDGHYTTFAC NKDSGQWHYF DDSSVSPVTE NQIESKAAYV ENSTTRP00000013010/1-952 IAVSNHYGGL RDGHYTTFAC NKDSGQWHYF DDNSVSPVTE NQIESKAAYV bmy_18397T0/1-984 IAVSNHYGGL RDGHYTTFAC NKDSGQWHYF DDNSVSPVTE NQIESKAAYV BACU010361/1-917 IAVSNHYGGL RDGHYTTFAC NKDSGQWHYF DDNSVSPVTE NQIESKAAYV 1001 1050 ENSP00000218348/1-963 LFYQRQDVAR RLLSPAGSSG APASPACSSP PSSEFMDVN ENSBTAP00000022310/1-910 LFYQRQDVAR RLQTQASSSK PPASSACGAP PKSEFVDVN ENSTTRP00000013010/1-952 LFYQRQDVAR RLQPQPSLSD PPASPAFGTP ANSEFMDVN bmy_18397T0/1-984 LFYQRQDVAR RLQPQPSLSD PPASPACGTP ANFEFMDIN BACU010361/1-917 LFYQRQDVAR RLQPQPSLSD PPASPACGTP ANFEFMDIN