KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:00 2014 Check: 00 .. Name: ENSBTAP00000022340/1-423 Len: 489 Check: 9208 Weight: 1.00 Name: ENSP00000333591/1-416 Len: 489 Check: 8167 Weight: 1.00 Name: bmy_08151T0/1-444 Len: 489 Check: 7775 Weight: 1.00 Name: BACU014334/1-422 Len: 489 Check: 6238 Weight: 1.00 Name: ENSTTRP00000002392/1-416 Len: 489 Check: 8435 Weight: 1.00 // 1 50 ENSBTAP00000022340/1-423 MRQLCRRGRV LGIAVAIAHG VFSGSLNILL KFLISRYQFS FLTLVQCLTS ENSP00000333591/1-416 MRQLCR-GRV LGISVAIAHG VFSGSLNILL KFLISRYQFS FLTLVQCLTS bmy_08151T0/1-444 MRQLCR-GRV LGISVAIAHG VFSGSLNILL KFLISRYQFT FLTLVQCLTS BACU014334/1-422 MRQLCR-GRV LGISVAIAHG VFSGSLNILL KFLISRYQFT FLTLVQCLTS ENSTTRP00000002392/1-416 MRQLCR-GRV LGISVAIAHG VFSGSLNILL KFLISRYQFT FLTLVQCLTS 51 100 ENSBTAP00000022340/1-423 STAALSLELL RRLGFIAVPP FGLNLARSFA GVAVLSTLQS SLTLWSLRGL ENSP00000333591/1-416 STAALSLELL RRLGLIAVPP FGLSLARSFA GVAVLSTLQS SLTLWSLRGL bmy_08151T0/1-444 STAALSLELL RRLGFIAVPP FGLSLARSFA GVTVLSTLQS SLTLWSLRGL BACU014334/1-422 STAALSLELL RRLGFIAVPP FGLSLARSFA GVTVLSTLQS SLTLWSLRGL ENSTTRP00000002392/1-416 STAALSLELL RRLGFIAVPP FGLSLARSFA GVTVLSTLQS SLTLWSLRGL 101 150 ENSBTAP00000022340/1-423 SLPMYVVFKR CLPLVTMLIG VLVLKNGAPS PGVLAAVLIT TCGAALAGAG ENSP00000333591/1-416 SLPMYVVFKR CLPLVTMLIG VLVLKNGAPS PGVLAAVLIT TCGAALAGAG bmy_08151T0/1-444 SLPMYVVFKR CLPLVTMLIG VLVLKNGAPS PGVLAA---- ---------- BACU014334/1-422 SLPMYVVFKR CLPLVTMLIG VLVLKNGAPS PGVLAAVLIT TCGAALAGAG ENSTTRP00000002392/1-416 SLPMYVVFKR CLPLVTMLIG VLVLKNGAPS PGVLAAVLIT TCGAALAGAG 151 200 ENSBTAP00000022340/1-423 DLTGDPIGYV TGVLAVLVHA AYLVLIQKAS ADTEHGPLTA QYVIAVSATP ENSP00000333591/1-416 DLTGDPIGYV TGVLAVLVHA AYLVLIQKAS ADTEHGPLTA QYVIAVSATP bmy_08151T0/1-444 ---------- ---------- -------KAS ADTEHGPLTA QYVIAVSATP BACU014334/1-422 DLTGDPIGYV TGVLAVLVHA AYLVLIQKAS ADTEHGPLTA QYVIAVSATP ENSTTRP00000002392/1-416 DLTGDPIGYV TGVLAVLVHA AYLVLIQKAS ADTEHGPLTA QYVIAVSATP 201 250 ENSBTAP00000022340/1-423 LLVVLSFAST DSIHAWTFPG WKDPAMVTIF VACILIGCAM NFTTLHCTYI ENSP00000333591/1-416 LLVICSFAST DSIHAWTFPG WKDPAMVCIF VACILIGCAM NFTTLHCTYI bmy_08151T0/1-444 LLVIFSFASS DSIHAWTFPG WKDPAMVCIF VACILIGCAM NFTTLHCTYI BACU014334/1-422 LLVIFSFASS DSIHAWTFPG WKDPAMVCIF VACILIGCAM NFTTLHCTYI ENSTTRP00000002392/1-416 LLVIFSFASS DSIHAWTFPG WKDPAMVCIF VACILIGCAM NFTTLHCTYI 251 300 ENSBTAP00000022340/1-423 NSAVTTSFVG VVKSIATITV GMVAFSDVEP TSLFIAGVVV NTLGSIIYCA ENSP00000333591/1-416 NSAVTTSFVG VVKSIATITV GMVAFSDVEP TSLFIAGVVV NTLGSIIYCV bmy_08151T0/1-444 NSAVTTSFVG VVKSIATITV GMVAFSDVEP TSLFIAGVVV NTLGSIIYCV BACU014334/1-422 NSAVTTSFVG VVKSIATITV GMVAFSDVEP TSLFIAGVVV NTLGSIIYCV ENSTTRP00000002392/1-416 NSAVTTSFVG VVKSIATITV GMVAFSDVEP TSLFIAGVVV NTLGSIIYCV 301 350 ENSBTAP00000022340/1-423 AKFLETRKQI NYEDLETQPG GEEAQPSGDQ LPFVMEELPA EGGNGWSEGG ENSP00000333591/1-416 AKFMETRKQS NYEDLEAQPR GEEAQLSGDQ LPFVMEELPG EGGNGRSEGG bmy_08151T0/1-444 AKFLETRKQS NYEDLETQPG GEEAQPSGDQ LPFGLEELPA EGGNGGSEGG BACU014334/1-422 AKFLETRKQS NYEDLETQPG GEEAQPSGDQ LPFGLEELPA EGGNGGSEGG ENSTTRP00000002392/1-416 AKFLETRKQS NYEDLETQPG GEEAQPSGDQ LPFGLEELPA EGGSGGSEGG 351 400 ENSBTAP00000022340/1-423 KAAGGSTQRD GQEARGSPRG VSLMARSSQI SDSPEEVGRS SLKDAYLEVW ENSP00000333591/1-416 EAAGGPAQES RQEVRGSPRG VPLVAGSS-- ----EEGSRR SLKDAYLEVW bmy_08151T0/1-444 KAAGGSTQQG GQEARGSPRG VPLVAGSSQI SDSPEEVSKR SLKDTYLEVW BACU014334/1-422 KAAGGSTQQG GQEARGGPRG VPPVAGSAQI SDGPEEVSKR SLKDTYLEVW ENSTTRP00000002392/1-416 TAAGGSTQQG GQEARGGPRG VPLVAGSS-- ----AEVSKR SLKDTYLEVW 401 450 ENSBTAP00000022340/1-423 RLVRGAKYVK KDYLIDN--- -----EELPS P--------- ---------- ENSP00000333591/1-416 RLVRGTRYMK KDYLIEN--- -----EELPS P--------- ---------- bmy_08151T0/1-444 ---SGGGALR MDSPVENGSS SLGEGDEADS PLERPWDPKE PVWDVNVSGV BACU014334/1-422 RLVRGAKYMK KDYLIEN--- -----EELPS P--------- ---------- ENSTTRP00000002392/1-416 RLVRGTKYMK KDYLIEN--- -----EELPS P--------- ---------- 451 500 ENSBTAP00000022340/1-423 ---------- ---------- ---------- --------- ENSP00000333591/1-416 ---------- ---------- ---------- --------- bmy_08151T0/1-444 ACCTSGKTVG FTVKAKIAFK DLSLKILKTF RGKVEGGQN BACU014334/1-422 ---------- ---------- ---------- --------- ENSTTRP00000002392/1-416 ---------- ---------- ---------- ---------