KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:01 2014 Check: 00 .. Name: bmy_06544T0/1-635 Len: 1034 Check: 2747 Weight: 1.00 Name: ENSTTRP00000006627/1-963 Len: 1034 Check: 2728 Weight: 1.00 Name: BACU006123/1-961 Len: 1034 Check: 8320 Weight: 1.00 Name: ENSP00000401445/1-977 Len: 1034 Check: 5436 Weight: 1.00 Name: ENSBTAP00000022347/1-949 Len: 1034 Check: 110 Weight: 1.00 // 1 50 bmy_06544T0/1-635 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006627/1-963 ---------- --ITFGVRIF GSPSTVTLPE TLLFVSTLDG SLHAVSKRTG BACU006123/1-961 ---------- ---------F GSPSTVTLPE TLLFVSTLDG SLHAVSKRTG ENSP00000401445/1-977 MPARRLLLLL TLLLPGLGIF GSTSTVTLPE TLLFVSTLDG SLHAVSKRTG ENSBTAP00000022347/1-949 --------FF YLSLQG---F GSPSTVTLPE TLLFVSTLDG SLHAVSKRTG 51 100 bmy_06544T0/1-635 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006627/1-963 SIKWTLKEDP VLQVPTHVEE PAFLPDPNDG SLYTLGGKNN EGLTKLPFTI BACU006123/1-961 SIKWTLKEDP VLQVPTHVEE PAFLPDPNDG SLYTLGGKNN EGLTKLPFTI ENSP00000401445/1-977 SIKWTLKEDP VLQVPTHVEE PAFLPDPNDG SLYTLGSKNN EGLTKLPFTI ENSBTAP00000022347/1-949 SIKWTLKEDP VLQVPTHVEE PAFLPDPNDG SLYTLGGKNN EGLTKLPFTI 101 150 bmy_06544T0/1-635 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006627/1-963 PELVQASPCR SSDGILYMGK KQDIWYVIDL LTGEKQQTLS SAFADSLCPS BACU006123/1-961 PELVQASPCR SSDGILYMGK KQDIWYVIDL LTGEKQQTLS SAFADSLCPS ENSP00000401445/1-977 PELVQASPCR SSDGILYMGK KQDIWYVIDL LTGEKQQTLS SAFADSLCPS ENSBTAP00000022347/1-949 PELVQASPCR SSDGILYMGK KQDIWYVIDL LTGEKQQTLS SAFADSLCPS 151 200 bmy_06544T0/1-635 ---------- ---------- ---------- ---------- ----MSHFVS ENSTTRP00000006627/1-963 TSLLYLGRTE YTITMYDTKT RELRWNATYF DYAAALPEDD VEYKMSHFVS BACU006123/1-961 TSLLYLGRTE YTITMYDTKT RELRWNATYF DYAAALPEDD GEYKMSHFVS ENSP00000401445/1-977 TSLLYLGRTE YTITMYDTKT RELRWNATYF DYAASLPEDD VDYKMSHFVS ENSBTAP00000022347/1-949 TSLLYLGRTE YTITMYDTKT RELRWNATYF DYAAALPEDG GDYKMSHFVS 201 250 bmy_06544T0/1-635 NGDGLVVTVD SESGDVLWIQ NYASPVVAFY IWQREGLRKV MHINVAVETL ENSTTRP00000006627/1-963 NGDGLVVTVD SESGDVLWIQ NYASPVVAFY IWQREGLRKV MHINVAVETL BACU006123/1-961 NGDGLVVTVD SDSGDVLWIQ NYASPVVAFY IWQREGLRKV MHINVAVETL ENSP00000401445/1-977 NGDGLVVTVD SESGDVLWIQ NYASPVVAFY VWQREGLRKV MHINVAVETL ENSBTAP00000022347/1-949 NGDGLVVTVD SESGDVLWIQ NYASPVVAFY IWQREGLRKV MHINVAVETL 251 300 bmy_06544T0/1-635 RYLTFMSGEV GRITKWKYPF PKETEAKSKL I--------- ---------- ENSTTRP00000006627/1-963 RYLTFMSGEV GRITKWKYPF PKETEAKSKL MPTLYVGKYS TSLYASPSMV BACU006123/1-961 RYLTFMSGEV GRITKWKYPF PKETEAKSKL MPTLYVGKYS TSLYASPSMV ENSP00000401445/1-977 RYLTFMSGEV GRITKWKYPF PKETEAKSKL TPTLYVGKYS TSLYASPSMV ENSBTAP00000022347/1-949 RYLTFMSGEV GRITKWKYPF PKETEAKSKL TPTLYVGKYS TSLYASPSMV 301 350 bmy_06544T0/1-635 ---------- -TLPLLEGPQ TDGVTIGDKG ECVITPSTDL KFDPGLKGKS ENSTTRP00000006627/1-963 HEGVAVVPRG STLPLLEGPQ TDGVTIGDKG ECVITPSTDL KFDPGLKGKS BACU006123/1-961 HEGVAVVPRG STLPLLEGPQ TDGVTIGDKG ECVITPSTDL KFDPGLKGKS ENSP00000401445/1-977 HEGVAVVPRG STLPLLEGPQ TDGVTIGDKG ECVITPSTDV KFDPGLKSKN ENSBTAP00000022347/1-949 HEGVAVVPRG STLPLLEGPQ TDGVTIGDKG ECVITPSTDL KFDPGLKGKS 351 400 bmy_06544T0/1-635 KFNYLHNYWL LI-------G HHETPLSAST KMLERFPNNL PKHRENVIPA ENSTTRP00000006627/1-963 KLNYLHNYWL LI-------G HHETPLSAST KMXXXXXXXX XXXXXXXXXX BACU006123/1-961 KLNYLHNYWL LIEPAVHSGG ESGTRESTAN KVL-RTDGEE GGFREAVGEA ENSP00000401445/1-977 KLNYLRNYWL LI-------G HHETPLSAST KMLERFPNNL PKHRENVIPA ENSBTAP00000022347/1-949 KLNYLRNYWL LI-------G HHETPLSAST KMLERFPNNL PKHRENVIPA 401 450 bmy_06544T0/1-635 DSEKKSFEEV IDLVDQTSEN APTTVSPDVE EKFAHAPARP EAPVDSMLKD ENSTTRP00000006627/1-963 XXXXXXXXXV IDLVDQTSEN APTTVSPDVE EKFAHAPPRP EAPVDSMLKD BACU006123/1-961 GGAGGERAEV IDLVDQTSEN APTIVSPDVE EKFAHAPARP EAPVDSMLKD ENSP00000401445/1-977 DSEKKSFEEV INLVDQTSEN APTTVSRDVE EKPAHAPARP EAPVDSMLKD ENSBTAP00000022347/1-949 DSEKKSFEEF VVL-----EN APTTVSPDVE EKFDHAPAKP EAPVDSMLKD 451 500 bmy_06544T0/1-635 MATIILSTFL LIGWVAFIIT YPL------- ---------- --------GP ENSTTRP00000006627/1-963 MATIILSTFL LIGWVAFIIT YPLSRRQQRQ LQHQQFQKEL EKIQLL--QQ BACU006123/1-961 MATIILSTFL LIGWVAFIIT YPLSRRQQRQ LQHQQFQKEL EKIQLL--QQ ENSP00000401445/1-977 MATIILSTFL LIGWVAFIIT YPLSMHQQQQ LQHQQFQKEL EKIQLLQQQQ ENSBTAP00000022347/1-949 MATIILSTFL LIGWVAFIIT YPLSIHQQRQ LQHQQFQKEL EKIQLL--QQ 501 550 bmy_06544T0/1-635 PSWGMGCPGK ---------- --SNWQERLQ SLTAFCPPRP SHWS------ ENSTTRP00000006627/1-963 QQLPFHPPGD VAAQDTDLLD SCGQYSESSA TSSPSTSPRA SNHSLHSSGS BACU006123/1-961 QQLPFHPPGD VAAQDAELLD SCGQYSESSA TSSPSTSPRV SNHSLHSSGS ENSP00000401445/1-977 QQLPFHPPGD -TAQDGELLD TSGPYSESSG TSSPSTSPRA SNHSLCSGSS ENSBTAP00000022347/1-949 QQLPFHPPGD -AAQDAELQD SSGQYSESSA TSSPSTSPRA SNHSLHSTGC 551 600 bmy_06544T0/1-635 ------RPAP R--------- ----GHLK-C P--------- -------LFL ENSTTRP00000006627/1-963 TSRAATSPFP EQDDEDEETS MVIVGKISFC PKDVLGHGAE GTIVYRGMFD BACU006123/1-961 ASKATTSPFP EQDDEDEETS MVMVGKISFC PKDVLGHGAE GTIVYRGMFD ENSP00000401445/1-977 ASKAGSSPSL EQDDGDEETS VVIVGKISFC PKDVLGHGAE GTIVYRGMFD ENSBTAP00000022347/1-949 TSKAVTSPFL EQDDEDEETG MVIVGKISFC PKDVLGHGAE GTIVYRGMFD 601 650 bmy_06544T0/1-635 RR-----RSL PR-------- ---------- ---------- ---------- ENSTTRP00000006627/1-963 NRDVAVKRIL PECFSFADRE VQLLRESDEH PNVIRYFCTE RDRQFQYIAI BACU006123/1-961 NRDVAVKRIL PECFSFADRE VQLLRESDEH PNVIRYFCTE RDRQFQYIAI ENSP00000401445/1-977 NRDVAVKRIL PECFSFADRE VQLLRESDEH PNVIRYFCTE KDRQFQYIAI ENSBTAP00000022347/1-949 NRDVAVKRIL PECFSFADRE VQLLRESDEH PNVIRYFCTE RDRQFQYIAI 651 700 bmy_06544T0/1-635 ---------- ---------- --PARLRAGR AAALARV--- ---------- ENSTTRP00000006627/1-963 ELCAATLQEY VEQKDFAHLG LEPITLLQQT TSGLAHLHSL NIVHRD--LK BACU006123/1-961 ELCAATLQEY VEQKDFAHLG LEPITLLQQT TSGLAHLHSL NIGEKPPLTR ENSP00000401445/1-977 ELCAATLQEY VEQKDFAHLG LEPITLLQQT TSGLAHLHSL NIVHRD--LK ENSBTAP00000022347/1-949 ELCAATLQEY VEQKDFAHLG LEPITLLQQT TSGLAHLHSL NIVHRD--LK 701 750 bmy_06544T0/1-635 ---------- AHGRIKAMIS DFGLCKKLAV GRHSFSRRSG VPGTEGWIAP ENSTTRP00000006627/1-963 PHNILLSMPS AHGRIKAMIS DFGLCKKLAV GRHSFSRRSG VPGTEGWIAP BACU006123/1-961 RGDSLLS--- AHGRIKAMIS DFGLCKKLAV GRHSFSRRSG VPGTEGWIAP ENSP00000401445/1-977 PHNILISMPN AHGKIKAMIS DFGLCKKLAV GRHSFSRRSG VPGTEGWIAP ENSBTAP00000022347/1-949 PHNILLSMPN AHGRIKAMIS DFGLCKKLAV GRHSFSRRSG VPGTEGWIAP 751 800 bmy_06544T0/1-635 EMLSEDCKEN PTYTVDIFSA GCVFYYVISE GSHPFGKSLQ RQANILLGAC ENSTTRP00000006627/1-963 EMLSEDCKEN PTYTVDIFSA GCVFYYVISE GSHPFGKSLQ RQANILLGAC BACU006123/1-961 EMLSEDCKEN PTCTVDIFSA GCVFYYVISE GSHPFGKSLQ RQANILLGAC ENSP00000401445/1-977 EMLSEDCKEN PTYTVDIFSA GCVFYYVISE GSHPFGKSLQ RQANILLGAC ENSBTAP00000022347/1-949 EMLSEDCKEN PTYTVDIFSA GCVFYYVISE GSHPFGKSLQ RQANILLGAY 801 850 bmy_06544T0/1-635 SLDCLHPEKH EDVIARELIE KMIAMDPQKR PSAKHVLKHP FFWSLEKQLQ ENSTTRP00000006627/1-963 SLDCLHPEKH EDVIARELIE KMIAMDPQKR PSAKHVLKHP FFWSLEKQLQ BACU006123/1-961 SLDCLHPEKH EDVIARELIE KMIAMDPQKR PSAKHVLKHP FFWSLEKQLQ ENSP00000401445/1-977 SLDCLHPEKH EDVIARELIE KMIAMDPQKR PSAKHVLKHP FFWSLEKQLQ ENSBTAP00000022347/1-949 SLDCLHPEKH EDVIARELIE KMIAMDPQKR PSAKHVLKHP FFWSLEKQLQ 851 900 bmy_06544T0/1-635 FFQDVSDRIE KESLDGPIVK QLERGGRAVV KMDWRENITV PLQTGDLAAP ENSTTRP00000006627/1-963 FFQDVSDRIE KESLDGLIVK QLERGGRAVV KMDWRENITV PLQT------ BACU006123/1-961 FFQDVSDRIE KESLDGPIVK QLERGGRAVV KMDWRENITV PLQT------ ENSP00000401445/1-977 FFQDVSDRIE KESLDGPIVK QLERGGRAVV KMDWRENITV PLQT------ ENSBTAP00000022347/1-949 FFQDVSDRIE KEALDGPIVK QLERGGRAVV KMDWRENITV PLQT------ 901 950 bmy_06544T0/1-635 PGSVLVEAVQ KQQLFLRSRL GNGNSGPFGA PNTASGIEAS CDLRKFRTYK ENSTTRP00000006627/1-963 ---------- ---------- ---------- ---------- -XXXXXXXXX BACU006123/1-961 ---------- ---------- ---------- ---------- -DLRKFRTYK ENSP00000401445/1-977 ---------- ---------- ---------- ---------- -DLRKFRTYK ENSBTAP00000022347/1-949 ---------- ---------- ---------- ---------- -DLRKFRTYK 951 1000 bmy_06544T0/1-635 GGSVRDLLRA MRNKKHHYRE LPEEVRETLG PLPDGFVRYF TSRFPHLLSH ENSTTRP00000006627/1-963 XXXXXXXXXX XXXXKHHYRE LPEEVRETLG PLPDGFVRYF TSRFPHLLSH BACU006123/1-961 GGSVRDLLRA MRNKKHHYRE LPEEVRETLG PLPDGFVRYF TSRFPHLLSH ENSP00000401445/1-977 GGSVRDLLRA MRNKKHHYRE LPAEVRETLG SLPDDFVCYF TSRFPHLLAH ENSBTAP00000022347/1-949 GSSVRDLLRA MRNKKHHYRE LPEEVQQTLG ALPDDFVRYF TSRFPHLLSH 1001 1050 bmy_06544T0/1-635 TYRAMELCRH ERPFQPYY-H EPLEPRPPVT PDAL ENSTTRP00000006627/1-963 TYRAMELCRR ERPFQPYY-H EPPEPRPPVT PDAL BACU006123/1-961 TYRAMELCRH ERPFQPYY-H EPPEPRPPVT PDAL ENSP00000401445/1-977 TYRAMELCSH ERLFQPYYFH EPPEPQPPVT PDAL ENSBTAP00000022347/1-949 TYRAMELCCH ERPFQPYY-H EPPEP----- ----