KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:17:13 2014 Check: 00 .. Name: ENSTTRP00000011666/1-364 Len: 397 Check: 1811 Weight: 1.00 Name: bmy_14623T0/1-325 Len: 397 Check: 3381 Weight: 1.00 Name: ENSP00000333685/1-364 Len: 397 Check: 5252 Weight: 1.00 Name: ENSBTAP00000022358/1-336 Len: 397 Check: 6362 Weight: 1.00 // 1 50 ENSTTRP00000011666/1-364 MSGPRAGFYR QELNKTVWEV PQRLQGLRPV GSGAYGSVCS AYDTRLRQRV bmy_14623T0/1-325 ---------- ---------- ----MEARPH RPPC----SS AYDTRLRQRV ENSP00000333685/1-364 MSGPRAGFYR QELNKTVWEV PQRLQGLRPV GSGAYGSVCS AYDARLRQKV ENSBTAP00000022358/1-336 ---------- -----TLWEV PQRLQGLRPV GSGAYGSVCS AYDTRLRQRV 51 100 ENSTTRP00000011666/1-364 AVKKLSRPFQ SLIHARRTYR ELRLLKHLKH ENVIGLLDVF TPATSLEDFS bmy_14623T0/1-325 AVKKLSRPFQ SLIHARRTYR ELRLLKHLKH EN-------- ---------- ENSP00000333685/1-364 AVKKLSRPFQ SLIHARRTYR ELRLLKHLKH ENVIGLLDVF TPATSIEDFS ENSBTAP00000022358/1-336 AVKKLSRPFQ SLIHARRTYR ELRLLKHLKH ENVIGLLDVF TPATALEDFS 101 150 ENSTTRP00000011666/1-364 EVYLVTTLMG ADLNNIVKCQ ALSDEHVQFL VYQLLRGLKY IHSAGIIHRD bmy_14623T0/1-325 ---------G AEPD----AP AVSPS----- --------QY IHSAGIIHRD ENSP00000333685/1-364 EVYLVTTLMG ADLNNIVKCQ ALSDEHVQFL VYQLLRGLKY IHSAGIIHRD ENSBTAP00000022358/1-336 EVYLVTTLMG ADLNNIVKCQ ALSDEHVQFL VYQLLRGLKY IHSAGIIHRD 151 200 ENSTTRP00000011666/1-364 LKPSNLAVNE DCELRILDFG LARQADEEMT GYVATRWYRA PEIMLNWMHY bmy_14623T0/1-325 LKPSNLAVNE DCELRILDFG LARQADEEMT GYVATRWYRA PEIMLNWMHY ENSP00000333685/1-364 LKPSNVAVNE DCELRILDFG LARQADEEMT GYVATRWYRA PEIMLNWMHY ENSBTAP00000022358/1-336 LKPSNVAVNE DCELRILDFG LARQADEEMT GYVATRWYRA PEIMLNWMHY 201 250 ENSTTRP00000011666/1-364 NQTVDIWSVG CIMAELLQGK ALFPGNDY-- ---------- ---------- bmy_14623T0/1-325 NQTVDIWSVG CIMAELLQGK ALFPGNDSAG EQVLGGDPTS GVWGPGESPC ENSP00000333685/1-364 NQTVDIWSVG CIMAELLQGK ALFPGSDY-- ---------- ---------- ENSBTAP00000022358/1-336 NQTVDIWSVG CIMAELLQGK ALFPGSDY-- ---------- ---------- 251 300 ENSTTRP00000011666/1-364 ---------- -IDQLKRIME VVGTPSPEVL AKISSEHXXX XXXXXXXXXX bmy_14623T0/1-325 LAVGHFLSQA DIDQLKRIME VVGTPSPEVL AKISSEHART YIQSLPHMPQ ENSP00000333685/1-364 ---------- -IDQLKRIME VVGTPSPEVL AKISSEHART YIQSLPPMPQ ENSBTAP00000022358/1-336 ---------- -IDQLKRIME VVGTPSPEVL AKISSEH--- ---------- 301 350 ENSTTRP00000011666/1-364 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14623T0/1-325 KDLRSIFHGA NPLAVDLLGR MLVLDSDQRV SAAEALAHAY FSQYHDPEDE ENSP00000333685/1-364 KDLSSIFRGA NPLAIDLLGR MLVLDSDQRV SAAEALAHAY FSQYHDPEDE ENSBTAP00000022358/1-336 KDLRSIFRGA NPLAVDLLGR MLVLDSDQRV SAAEALAHAY FSQYHDPDDE 351 400 ENSTTRP00000011666/1-364 XXXXXXXXXX XXXXXXXXXX XXLTYQEVLS FKPPEPPQPP GSLDVKQ bmy_14623T0/1-325 PEAEPYDESV EAKERTVEEW KELTYQEVLS FKPPEPPQPP GSLDVKQ ENSP00000333685/1-364 PEAEPYDESV EAKERTLEEW KELTYQEVLS FKPPEPPKPP GSLEIEQ ENSBTAP00000022358/1-336 PEAEPYDESV EAKERTVEEW KELTYQEVLS FKPPEPPQPL GSLDVEQ