KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:14 2014 Check: 00 .. Name: bmy_04277T0/1-560 Len: 755 Check: 2481 Weight: 1.00 Name: ENSP00000337103/1-748 Len: 755 Check: 8010 Weight: 1.00 Name: ENSBTAP00000022369/1-637 Len: 755 Check: 7404 Weight: 1.00 Name: BACU007601/1-658 Len: 755 Check: 3201 Weight: 1.00 Name: ENSTTRP00000013960/1-652 Len: 755 Check: 9163 Weight: 1.00 // 1 50 bmy_04277T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000337103/1-748 MGLRTAKKRG LGGGGKWKRE EGGGTRGRRE VRPACFLQSG GRGDPGDVGG ENSBTAP00000022369/1-637 ---------- ---------- ---------- ---------- ---------- BACU007601/1-658 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013960/1-652 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_04277T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSP00000337103/1-748 PAGNPGCSPH PRAATRPPPL PAHTPAHTPE WCGAASAEAA EPRRAGPHLC ENSBTAP00000022369/1-637 ---------- ---------- ---------- ---------- ---------- BACU007601/1-658 ---------- -MGAGRSTPL ---------- ---------- ---------- ENSTTRP00000013960/1-652 ---------- ---------- ---------- ---------- ------PHLC 101 150 bmy_04277T0/1-560 -------MVS HLPFSPQDMA QN-------P EVDQMRQESP RGHVEGFARG ENSP00000337103/1-748 IPAPGLTKTP ILEKVPRKMA AKTPSSEE-S GLPKLPVPPL QQTLATYLQC ENSBTAP00000022369/1-637 --------TP LYPNLHPRAS CENL-----I GLPKLPVPPL QQTLATYLRC BACU007601/1-658 LPQSGVTKMP ILEKTPPKTA AKSPSSDEEP GLPKLPVPPL QQTLATYLRC ENSTTRP00000013960/1-652 FP-SGVTNMP ILEKTPPKMA AKSPSSEEEP GLPKLPVPPL QQTLATYLRC 151 200 bmy_04277T0/1-560 GRKGIVGTAD SCHSRTSVDP SHEPGEI--- ----TLARTN ELA------Y ENSP00000337103/1-748 MRH-LVSEEQ FRKSQAIVQQ FGAPGGLGET LQQKLLERQE KTANWVSEYW ENSBTAP00000022369/1-637 MQH-LVPQEQ FRRSQAIVQQ FGAPGGLGET LQQKLLERQE RTANWVSEYW BACU007601/1-658 MQH-LVPEEQ FRRSQAIVQR FGAPGGLGET LQQKLLERQE KTASWVFEYW ENSTTRP00000013960/1-652 MQH-LVPEEQ FRRSQAIVQR FGAPGGLGES LQQKLLERRE KTANWVSEYW 201 250 bmy_04277T0/1-560 VPDVACRCEW RVPLDGGIGA PSLAQNW--- ---LQLKGRT LAGTLRVSWS ENSP00000337103/1-748 LNDMYLNNRL ALPVNSSPAV IFARQHFPGT DDQLRFAASL ISGVLSYKAL ENSBTAP00000022369/1-637 LNDMYLNNRL ALPVNSSPAV IFARQHFQDT NDQLRFAADL ISGVLSYKTL BACU007601/1-658 LNDMYLNNRL ALPVNSSPAV IFARQHFQDT NDQLRFAANL ISGVLSYKAL ENSTTRP00000013960/1-652 LNDMYLNNRL ALPVNSSPAV IFARQHFQDT SDQLRFAANL ISGVLSYKAL 251 300 bmy_04277T0/1-560 L---GLAQKL RTVRLTSRPT ---------- ----PWVVGD SGLAQDLGV- ENSP00000337103/1-748 LDSHSIPTDC AKGQLSGQPL CMKQYYGLFS SYRLPGHTQD TLVAQNSSIM ENSBTAP00000022369/1-637 LDSHSIPTDC AKGQLSGQPL CMKQYYGLFS SYRLPGHTQD TLVAQKSSVM BACU007601/1-658 LDSHSIPTDC AKGQLSGQPL CMKQYYGLFS SYRLPGHTQD TLVAQKSSVM ENSTTRP00000013960/1-652 LDSHSIPTDC AKGQLSGQQL CMKQYYGLFS SYRLPGHTQD TLVAQKSSVM 301 350 bmy_04277T0/1-560 ----HTCV-- ---------- ---------- ---------- -------RLL ENSP00000337103/1-748 PEPEHVIVAC CNQFFVLDVV INFRRLSEGD LFTQLRKIVK MASNEDERLP ENSBTAP00000022369/1-637 PEPEHVIVAC CNQFFVLDVV INFRRLSEGD LFTQLRKIVR MASNEDERLP BACU007601/1-658 PEPEHVIVAC CNQFFVLDVV INFRRLSEGD LFTQLRKIVR MASNEDERLP ENSTTRP00000013960/1-652 PEPEHVIVAC CDQFFVLDVV INFRRLSEGD LFTQLRKIVR MASNEDERLP 351 400 bmy_04277T0/1-560 RVGLCRGDPR PGAGQVLSKA VLACPADSTN RDSLDMIERC ICLVCLDAPG ENSP00000337103/1-748 PIGLLTSDGR SEWAE--ART VLV--KDSTN RDSLDMIERC ICLVCLDAPG ENSBTAP00000022369/1-637 PIGLLTSDGR SEWTE--ART VLM--KDSTN RDSLDMIERC ICLVCLDAPG BACU007601/1-658 PIGLLTSDGR SEWAE--ART VLV--KDSTN RDSLDMIERC ICLVCLDAPG ENSTTRP00000013960/1-652 PIGLLTSDGR SEWAE--ART VLV--KDSTN RDSLDMIERC ICLVCLDAPG 401 450 bmy_04277T0/1-560 GMELSDTNRA LQLLHGGGCS KNGANRWYDK SLQFVVGRDG TCGVVCEHSP ENSP00000337103/1-748 GVELSDTHRA LQLLHGGGYS KNGANRWYDK SLQFVVGRDG TCGVVCEHSP ENSBTAP00000022369/1-637 GVELSDTNRA LQLLHGGGCS KNGANRWYDK SLQFVVGRDG TCGVVCEHSP BACU007601/1-658 GMELSDTNRA LQLLHGGGCS KNGANRWYDK SLQFVVGRDG TCGVVCEHSP ENSTTRP00000013960/1-652 GVELSDTNRA LQLLHGGGCS KNGANRWYDK SLQFVVGRDG TCGVVCEHSP 451 500 bmy_04277T0/1-560 FDGIVLVQCT EHLLKHMVKT SRKMVRADSV SELPAPRRLR WKCSPEIQGL ENSP00000337103/1-748 FDGIVLVQCT EHLLKHVTQS SRKLIRADSV SELPAPRRLR WKCSPEIQGH ENSBTAP00000022369/1-637 FDGIVLVQCT EHLLKHMVKT SKKMVRADSV SELPAPRRLR WKCSPEIQGL BACU007601/1-658 FDGIVLVQCT EHLLKHMVKT SKKMVRADSV SELPAPRRLR WKCSPEIQGL ENSTTRP00000013960/1-652 FDGIVLVQCT EHLLKHMVKT SKRMVRADSV RELPAPRRLR WKCSPEIQGL 501 550 bmy_04277T0/1-560 LATSAEKLQQ IVKNLDFIVY KFDDYGKTFI KQQKCSPDAF IQVALQLAFY ENSP00000337103/1-748 LASSAEKLQR IVKNLDFIVY KFDNYGKTFI KKQKCSPDAF IQVALQLAFY ENSBTAP00000022369/1-637 LASSAEKLQQ IVKNLDFTVY KFDDYGKTFI KQQKCSPDAF IQVALQLAFY BACU007601/1-658 LASSAEKLQQ IVKNLDFIVY KFDDYGKTFI KQQKCSPDAF IQVALQLAFY ENSTTRP00000013960/1-652 LASSAEKLQQ IVKNLDFTVY KFDDYGKTFI KQQKCSPDAF IQVALQLAFY 551 600 bmy_04277T0/1-560 RLHRRLVPTY ESASIRRFHE GRVDNIRSAT LEVLRFVKTI TD-HTATVPD ENSP00000337103/1-748 RLHRRLVPTY ESASIRRFQE GRVDNIRSAT PEALAFVRAV TD-HKAAVPA ENSBTAP00000022369/1-637 RLHGKLVPTY ESASIRRFQE GRVDNIRSAT PEALRFVKAI ADHHTAAAPD BACU007601/1-658 RLHRRLVPTY ESASIRRFRE GRVDNIRSAT LEALRFVKTI TD-RTATMPD ENSTTRP00000013960/1-652 RLHRRLVPTY ESASIRRFRE GRVDNIRSAT LEVLRFVKTI TD-HTATVPD 601 650 bmy_04277T0/1-560 SEKLLLLKDA IRAQTEYTVM AITGMAIDNH LLGLRELARE VCKELPEMFT ENSP00000337103/1-748 SEKLLLLKDA IRAQTAYTVM AITGMAIDNH LLALRELARA MCKELPEMFM ENSBTAP00000022369/1-637 SEKLLLLKDA IRAQTEYTVM AITGMAIDNH LLGLRELARE MCKELPEMFT BACU007601/1-658 SEKLLLLKDA IRAQTEYTVM AITGMAIDNH LLGLRELARE VCKELPEMFT ENSTTRP00000013960/1-652 SEKLLLLKDA IRAQTEYTVM AITGMAIDNH LLGLQELARE VCKELPEMFT 651 700 bmy_04277T0/1-560 DETYLMSNRF VLSTSQVPTT MEMFCCYGPV VPNGYGACYN SQPESILFCI ENSP00000337103/1-748 DETYLMSNRF VLSTSQVPTT TEMFCCYGPV VPNGYGACYN PQPETILFCI ENSBTAP00000022369/1-637 DETYLMSNRF VLSTSQVPTT MEMFCCYGPV VPNGYGACYN PQPESILFCI BACU007601/1-658 DETYLMSNRF VLSTSQVPTT MEMFCCYGPV VPNGYGACYN PQPESILFCI ENSTTRP00000013960/1-652 DETYLMSNRF ILSTSQVPTT MGMFCCYGPV VPNGYGACYN PQPESILFCI 701 750 bmy_04277T0/1-560 SSFHGCKETS STKFAKAVEE SLIEMRGLCS RPPCATGKPL VKKEKVTRPS ENSP00000337103/1-748 SSFHSCKETS SSKFAKAVEE SLIDMRDLCS LLPPTESKPL ATKEKATRPS ENSBTAP00000022369/1-637 SSFHNCKETS STKFAKAVEE SLLDMRRLCS LPLSATGKPP ATKEKVTRPS BACU007601/1-658 SSFHGCKETS STKFAKAVEE SLIEMRGLCS RPPCTTGKPL VKKEKVTRPS ENSTTRP00000013960/1-652 SSFHGCKETS STKFAKAVEE SLIEMRGLCS RPPCATGKPL VTKEKVTRPS 751 800 bmy_04277T0/1-560 QGHQP ENSP00000337103/1-748 QGHQP ENSBTAP00000022369/1-637 QGHQP BACU007601/1-658 QGHQP ENSTTRP00000013960/1-652 QGHQP