KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:19 2014 Check: 00 .. Name: ENSTTRP00000005487/1-692 Len: 749 Check: 9972 Weight: 1.00 Name: ENSP00000402038/1-732 Len: 749 Check: 3106 Weight: 1.00 Name: ENSBTAP00000022398/1-692 Len: 749 Check: 7094 Weight: 1.00 Name: bmy_21539T0/1-498 Len: 749 Check: 2285 Weight: 1.00 Name: BACU001338/1-493 Len: 749 Check: 5425 Weight: 1.00 // 1 50 ENSTTRP00000005487/1-692 MFSFRGCGRW VAASLTKQHH PSSRFSGDSA APWTPHFDVV VIGGGHAGTE ENSP00000402038/1-732 MFYFRGCGRW VAVSFTKQQF PLARLSSDSA APRTPHFDVI VIGGGHAGTE ENSBTAP00000022398/1-692 MFCIRGCGRR VAASLTKQHL ASVRFGGDSA APWTPHFDVV VIGGGHAGTE bmy_21539T0/1-498 ---------- ---------- ---------- ---------- ---------- BACU001338/1-493 ---------- ---------- ---------- --------MI VIG------- 51 100 ENSTTRP00000005487/1-692 AAAAAARCGS RTLLLTHRVD TIGQMSCNPS FGGIGKGHLM REVDALDGLC ENSP00000402038/1-732 AATAAARCGS RTLLLTHRVD TIGQMSCNPS FGGIGKGHLM REVDALDGLC ENSBTAP00000022398/1-692 AAAAAARCGS RTLLLTHRVD TIGQMSCNPS FGGIGKGHLM REVDALDGLC bmy_21539T0/1-498 ---------- ---------- ----MSCNPS FGGIGKGHLM REVDALDGLC BACU001338/1-493 ---------- ---------- ----LEMHP- ---------- ---------A 101 150 ENSTTRP00000005487/1-692 SRICDQSGVH YKVLNRRKGP AVWGLRAQID RKLYKQNMQK EILNTPLLTV ENSP00000402038/1-732 SRICDQSGVH YKVLNRRKGP AVWGLRAQID RKLYKQNMQK EILNTPLLTV ENSBTAP00000022398/1-692 SRICDQSGIH YKVLNRRKGP AVWGLRAQID RKLYKQNMQK EILNTPLLTV bmy_21539T0/1-498 SRICDQSGVH YKVLNRRKGP AVWGLRAQID RKLYKQNMQK EILNTPLLTV BACU001338/1-493 GRLGDQPSIG LAQTLEKLGF VVGRLK---- ---------- ---------- 151 200 ENSTTRP00000005487/1-692 QEGAVEDLIL TEPEPEHTGK YRVSGVVLXX XXXXXXXXVV LTTGTFLRGM ENSP00000402038/1-732 QEGAVEDLIL TEPEPEHTGK CRVSGVVLVD GSTVYAESVI LTTGTFLRGM ENSBTAP00000022398/1-692 QEGAVEDLIL TEPEPEHTGK YRVSGVVLAD GSKVYAESVV LTTGTFLRGM bmy_21539T0/1-498 QEGA------ ---------- ---------- ---------- ---------- BACU001338/1-493 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000005487/1-692 IVIGLEMHPA GRLGDQPSIG LAQTLEKLGF VVGRLKTGTP PRIAKESINF ENSP00000402038/1-732 IVIGLETHPA GRLGDQPSIG LAQTLEKLGF VVGRLKTGTP PRIAKESINF ENSBTAP00000022398/1-692 IVIGLEMHPA GRLGDQPAVG LAQTLEKLGF VVGRLKTGTP PRIAKESVNF bmy_21539T0/1-498 ---------- ---------- ---------- ---------- ---------- BACU001338/1-493 ---------- ---------- ---------- ------TGTP PRIAKESINF 251 300 ENSTTRP00000005487/1-692 SILNKQTPDN PSIPFSFINE TVWIKXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000402038/1-732 SILNKHIPDN PSIPFSFTNE TVWIKPEDQL PCYLTHTNPR VDEIVLKNLH ENSBTAP00000022398/1-692 SILNKQTPDN PSIPFSFINQ TVWIKPEDQL PCYLTHTNPR VDEIVLENLH bmy_21539T0/1-498 ---------- ---------- -----PEDQL PCYLTHTNPQ VDEIVLENLH BACU001338/1-493 SILNKQTPDN PSIPFSFINE TVWIKPEDQL PCYLTHTNPQ VDEIVLENLH 301 350 ENSTTRP00000005487/1-692 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000402038/1-732 LNSHVKETTR GPRYCPSIES KVLRFPNRLH QVWLEPEGMD SDLIYPQGLS ENSBTAP00000022398/1-692 LNCHVKETTR GPRYCPSIES KVLRFPNRVH QVWLEPEGMD SDLIYPQGLS bmy_21539T0/1-498 LNCHVKETTR GPRYCPSIES KVLRFPNRLH QVWLEPEGMD SDLIYPQGLS BACU001338/1-493 LNCHVKETTR GPRYCPSIES KVLRFPNRIH QVWLEPEGMD SDLIYPQGLS 351 400 ENSTTRP00000005487/1-692 XXXXXXXXXX XXXXXXXXXX XXXXXXXYGV QYDYLDPRQI TPSLETHLVQ ENSP00000402038/1-732 MTLPAELQEK MITCIRGLEK AKVIQPGYGV QYDYLDPRQI TPSLETHLVQ ENSBTAP00000022398/1-692 VTLPAELQEK MITCIRGLEN AKMIQPGYGV QYDYMDPRQI SPSLETHLVQ bmy_21539T0/1-498 VTLPAELQEK MITCIRGLEK AKMIQPGYGV QYDYLDPRQI TPSLETHLVQ BACU001338/1-493 VTLPAELQEK MITCIRGLEK AKMIQPGYGV QYDYLDPRQI TPSLETHLVQ 401 450 ENSTTRP00000005487/1-692 RLFFAGQING TTGYEEAAA- ---------- ---------- ---------- ENSP00000402038/1-732 RLFFAGQING TTGYEEAAAQ TECCSVARLE CSDMISQLQA ILLPQPSLVA ENSBTAP00000022398/1-692 RLFFAGQING TTGYEEAAA- ---------- ---------- ---------- bmy_21539T0/1-498 RLFFAGQING TTGYEEAAA- ---------- ---------- ---------- BACU001338/1-493 RLFFAGQING TTGYEEAAA- ---------- ---------- ---------- 451 500 ENSTTRP00000005487/1-692 ---------Q GVIAGINASP RVRHKPPFVI SRTQGYIGVL IDDLTTLGTQ ENSP00000402038/1-732 GTAGMHHNTQ GVIAGINASL RVSRKPPFVV SRTEGYIGVL IDDLTTLGTS ENSBTAP00000022398/1-692 ---------Q GVIAGINASL RVRHKPPFVI SRTEGYIGVL IDDLTTLGTN bmy_21539T0/1-498 ---------Q GVIAGINASL RVRHKPPFVI SRTEGYIGVL IDDLTTLGTN BACU001338/1-493 ---------Q GVIAGINASL RVRHKPPFVI SRTEGYLGVL IDDLTTLGTN 501 550 ENSTTRP00000005487/1-692 EPYRMFTSRA EFRLSLRPDN ADSRLTFRGY KEAGCVSQQR YERAIWMKSS ENSP00000402038/1-732 EPYRMFTSRV EFRLSLRPDN ADSRLTLRGY KDAGCVSQQR YERACWMKSS ENSBTAP00000022398/1-692 EPYRMFTSRA EFRLSLRPDN ADSRLTFRGY KEAGCVSQQR YERASWMKSS bmy_21539T0/1-498 EPYRMFTSRA EFRLSLRPDN ADSRLTFRGY KEAGCVSQQR YERATWMKSS BACU001338/1-493 EPYRMFTSRA EFRLSLRPDN ADSRLTFRGY KEAGCVSQQR YERATWMKSS 551 600 ENSTTRP00000005487/1-692 LEEGISVLKS IEFPSSKWKN LIPEASISIG KSL------- --PL------ ENSP00000402038/1-732 LEEGISVLKS IEFLSSKWKK LIPEASISTS RSL------- --PV------ ENSBTAP00000022398/1-692 LEEGISMLKS IEFLSTKWKN LIPESSISSG KSL------- --PL------ bmy_21539T0/1-498 LEEGISVLKS IEFPSSKWKN LIPEASISSG NLVLNLLDII WTPVLMKLLC BACU001338/1-493 LEEGISVLKS IEFSSSKWKN LIPEASISSG KSL------- --PL------ 601 650 ENSTTRP00000005487/1-692 --RALDVLKY EEVDIELLAK AVPEPLRKYT KCRELAERLK IEATYESVLF ENSP00000402038/1-732 --RALDVLKY EEVDMDSLAK AVPEPLKKYT KCRELAERLK IEATYESVLF ENSBTAP00000022398/1-692 --RALDVLKY EEVDMELLAR AVPEPLKKYT QCRELAERLK IEATYESVLF bmy_21539T0/1-498 ICRALDVLKY EEVDIELLAK AVPEPLKEYT KCRELAERLK IE-------- BACU001338/1-493 --RALDVLKY EEVDIELLAK AVPEPLKEYT KCRELAERLK IEATYESVLF 651 700 ENSTTRP00000005487/1-692 HQQQEIKEVQ RDEALQLPKD LDYLTLRDVS LSHEVREKLH FSRPQTIGAA ENSP00000402038/1-732 HQLQEIKGVQ QDEALQLPKD LDYLTIRDVS LSHEVREKLH FSRPQTIGAA ENSBTAP00000022398/1-692 HQQQEIKEVQ RDEALQLPKD LDYLTLKDIS LSYEVREKLH FSRPQTIGAA bmy_21539T0/1-498 --------VQ RDEALQLPKD LDYLTLRDVS LSCEVREKLH FSRPQTIGAA BACU001338/1-493 HQQQEIKEVQ RDEALQLPKD LDYLTLRDVS LSREVREKLH FSRPQTIGAA 701 750 ENSTTRP00000005487/1-692 SRIPGVTPAA IINLLRFVKT TQQRQAAMDR LPKTDQHLCN TDKLEDRQL ENSP00000402038/1-732 SRIPGVTPAA IINLLRFVKT TQRRQSAMNE SSKTDQYLCD ADRLQEREL ENSBTAP00000022398/1-692 SRIPGVTAAA IVNLLRFVKT TQQRQAAMNR IPKTDQQLHD TDRLEESQL bmy_21539T0/1-498 SRIPGVTPAA IINLLRFVKT TQQRQAAMDR LPKTDQRLCN TDKLEDRQL BACU001338/1-493 SRIPGVTPAA IINLLRFVKT TQQRQAAVDR LPKTDQRLCN TDKLEDRQL