KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:20 2014 Check: 00 .. Name: ENSP00000313600/1-1461 Len: 1596 Check: 420 Weight: 1.00 Name: ENSBTAP00000022402/1-1462 Len: 1596 Check: 323 Weight: 1.00 Name: ENSTTRP00000010606/1-1463 Len: 1596 Check: 2652 Weight: 1.00 Name: bmy_06447T0/1-1331 Len: 1596 Check: 1808 Weight: 1.00 Name: BACU019796/1-1467 Len: 1596 Check: 1892 Weight: 1.00 // 1 50 ENSP00000313600/1-1461 MALSVDSSWH RWQWRVRDGF PHCPSETTPL LSPEKGRQSY NLTQQRVVFP ENSBTAP00000022402/1-1462 MALSVDSSWH RWQRRVRDGC PQSPSEATPL LLAEKETRNY NPAQQRVVFP ENSTTRP00000010606/1-1463 MALSVDSSWY RWQWRVRDGL PQSPSEATPL LSPEEGAQNY NLAQQRVVFP bmy_06447T0/1-1331 ---------- ---------- ---------- ---------- ---------- BACU019796/1-1467 MAVSVDSSWY RWQWRVRDGL PQSPSEATPL LSPEGGPQSY NLAQQRVVFP 51 100 ENSP00000313600/1-1461 NNSIFHQDWE EVSRRYPGNR TCTTKYTLFT FLPRNLFEQF HRWANLYFLF ENSBTAP00000022402/1-1462 NNHAFHQDWA KFSRRYPSNR ICTTKYTLFT FLPRNLLEQF HRWANLYFLF ENSTTRP00000010606/1-1463 NNNVFHQDWA KVSRRYSGNR ICTTKYTLFT FLPQNLLEQF HRWANLYFLF bmy_06447T0/1-1331 ---------- ---------- ---MKLLLY- ---RNLM--- ---------- BACU019796/1-1467 NNNVLHQDWA KVSRRYCGNR ICTTKYTLFT FLPQNLLEQF HRWANLYFLF 101 150 ENSP00000313600/1-1461 LVILNWMPSM EVFHREITML PLAIVLFVIM IKDGMEDFKR HRFDKAINCS ENSBTAP00000022402/1-1462 LVILNWIPTL EVFHREITML PLAIVLFIIM VKDGMEDFRR YRFDRQINCS ENSTTRP00000010606/1-1463 LVILNWMPSM EVFHREITML PLAIVLFITM VKDGIEDFKR HRLDREINCS bmy_06447T0/1-1331 ---------- ---------- ---------- ---------- ---------- BACU019796/1-1467 LVILNWMPSM EVFHREITML PLAIVLFIIM VKDGIEDFKR HRLDREINCS 151 200 ENSP00000313600/1-1461 NIRIYERKEQ TYVQKCWKDV RVGDFIQMKC NEIVPADILL LFSSDPNGIC ENSBTAP00000022402/1-1462 NIQIYERKEQ SYVQKCWKDV HVGDFIQMQC NEIIPADILL LFSSDPSGVC ENSTTRP00000010606/1-1463 NIQIYERKEQ SYTQKCWKDV QVGDFIQMQC NEIIPADILL LFSSDPSGIC bmy_06447T0/1-1331 ---------- ---------- ---------- ---------- ---------- BACU019796/1-1467 NIQIYERKEQ SYTQKCWKDV RVGDFVQVQC NEIIPADMLL LFSSDPSGIC 201 250 ENSP00000313600/1-1461 HLETASLDGE TNLKQRCVVK GFSQQEVQFE PELFHNTIVC EKPNNHLNKF ENSBTAP00000022402/1-1462 HLETANLDGE TNLKQRRVVK GFSQQEVQFQ PEHFHNTIVC EKPNNHLNKF ENSTTRP00000010606/1-1463 HLETSNLDGE TNLKQRRVVK GFTQQEVQFQ PEGFHNIIVC EKPNNHLNRF bmy_06447T0/1-1331 --------G- ---------- ---------- ---------- ---------- BACU019796/1-1467 HLETSNLDGE TNLKQRRVVK GFTEQEVQFQ PERFHNTIVC EKPNNHLNRF 251 300 ENSP00000313600/1-1461 KGYMEHPDQT RTGFGCESLL LRGCTIRNTE MAVGIVIYAG HETKAMLNNS ENSBTAP00000022402/1-1462 KGYMEHPDQT RTGFGSESLL LRGCTIRNTE VAVGIVIYKG HETKAMLNNS ENSTTRP00000010606/1-1463 KGYMEHPDQS RTGFGSESLL LRGCTIRNTK VAVGIVIYAG HETKAMLNNS bmy_06447T0/1-1331 ----EEPEAN RGQ------- --GLTISFS- -------LKG HETKAMLNNS BACU019796/1-1467 KGYMEHPDQS RTGFGSESLL LRGCTIRNTK VAVGIVIYAG HETKAMLNNS 301 350 ENSP00000313600/1-1461 GPRYKRSKIE RRMNIDIFFC IGILILMCLI GA-------- ---------- ENSBTAP00000022402/1-1462 GPRYKRSKIE RRMNRDIFSC IGILFLMCLI GA-------- ---------- ENSTTRP00000010606/1-1463 GPRYKRSKIE RRMNTDIFFC IGILFLMCLT GA-------- ---------- bmy_06447T0/1-1331 GPRYKRSKIE RRMNTDVFFC IGILFLIMSS PGLSDHPVPT WASEPLQASS BACU019796/1-1467 GPRYKRSKIE RRMNTDVFFC IGILFLMCLT GA-------- ---------- 351 400 ENSP00000313600/1-1461 ---------- VGHSIWNGTF EEHPPFDVPD ANGSFLPSAL GGFYMFLTMI ENSBTAP00000022402/1-1462 ---------- VGHGLWNGTF TEHPPFDVPD AKGNYLPLAL GGFYMFLTMI ENSTTRP00000010606/1-1463 ---------- VGHSLWNGTF AEHPPFDVPD AEGNFLPLAL GGFYMFLTMI bmy_06447T0/1-1331 SMQPALTSFM VCHSLWNGTF AEHPPFDVPD AEGHFLPLAL GGFYMFLTMI BACU019796/1-1467 ---------- VGHSLWNGTF AEHPPFDVPD AEGHFLPLAL GGFYMFLTMI 401 450 ENSP00000313600/1-1461 ILLQ------ ---------- --------VL IPISLYVSIE LVKLGQVFFL ENSBTAP00000022402/1-1462 ILLQ------ ---------- --------IL IPISLYVSIE LVKLGQVFFL ENSTTRP00000010606/1-1463 ILLQ------ ---------- --------IL IPISLYVSIE LVKLGQVFFL bmy_06447T0/1-1331 ILLQFEMEKE NRHYIGGKKQ KHRAPMREIL IPISLYVSIE LVKLGQVFFL BACU019796/1-1467 ILLQ------ ---------- --------IL IPISLYVSIE LVKLGQVFFL 451 500 ENSP00000313600/1-1461 SNDLDLYDEE TDLSIQCRAL NIAEDLGQIQ YIFSDKTGTL TENKMVFRRC ENSBTAP00000022402/1-1462 HNDLDLYDEE TDLSIQCRAL NITEDLGQIQ YIFSDKTGTL TENKMVFRRC ENSTTRP00000010606/1-1463 HNDLDLYDEE TYLSIQCRAL NITEDLGQIQ YIFSDKTGTL TENKMVFRRC bmy_06447T0/1-1331 HNDLDLYDEE THLSIQCRAL NITEDLGQIQ YIFSDKTGTL TENKMVFRRC BACU019796/1-1467 HNDLDLYDEE THLSIQCRAL NITEDLGQIQ YIFSDKTGTL TENKMVFRRC 501 550 ENSP00000313600/1-1461 TIMGSEYSHQ ENAKRLETPK ELDSDGEEWT QYQCLSFSAR WAQDPATMRS ENSBTAP00000022402/1-1462 TIMGHEYSHQ ENAKRLETPK ELDSDSEEWT QYRCLSFPAR RDQGPATMRG ENSTTRP00000010606/1-1463 TIMGHEYSHQ ENAKRLETPE ELDSDSEEWT QYRCLSFPAR RDQGPATIRG bmy_06447T0/1-1331 TIMGHEYSHQ ENAKRLETPK ELDSDGEEWT QYQCLSFPAR RDQGPATVRG BACU019796/1-1467 TIMGHEYSHQ ENAKRLETPK ELDSDGEEWT QYQCLSFPAR RDQGPATVRG 551 600 ENSP00000313600/1-1461 QKGAQPLRRS QSARVPIQGH YRQRSMGHRE SSQPPVAFSS SIEKDVTPDK ENSBTAP00000022402/1-1462 QGGSQPLRRS QSARVPIQSH SRQRSMGRCE ISQPSVAFSS SIEKDVTPDK ENSTTRP00000010606/1-1463 QGGSQPL-RS QSARARIQGH WRQRSRGRCE ISQPPVAFSS SIEKDVTPDK bmy_06447T0/1-1331 QGGSQPLRRS QSARARIQGH LRQRSTGRCE ISQPPVAFSS SIEKDVTPDK BACU019796/1-1467 QGGSQPLRRS QSARARIQGH LRQRSTGRCE ISQPPVAFSS SIEKDVTPDK 601 650 ENSP00000313600/1-1461 NLLTKVRDAA LWLETLSDSR PAKASLSTTS SIADFFLALT ICNSVMVSTT ENSBTAP00000022402/1-1462 NLLSKVRDAA LWLETLSDGR PPKPSLATAS SVADFFLALT ICNSVMVSTT ENSTTRP00000010606/1-1463 NLLTKVRDAA LWLETLSDSR PAKPSLSTTS STADFFLALT ICNSVTVSTT bmy_06447T0/1-1331 NLLTKVRDAA LWLETLSDSR PAKPSLSTTS STADFFLALT ICNSVTVSTT BACU019796/1-1467 NLLTEVRDAA LWLETLSDSR PAKPSLSTTS STADFFLALT ICNSVTVSTT 651 700 ENSP00000313600/1-1461 TEPRQRV--- TIKPSSKALG TSLEKIQQLF QKLKLLSLSQ SFSSTAPSDT ENSBTAP00000022402/1-1462 TEPRQRV--- TMPPSTKALG TSLEKIQQLF HRLKLSSLSQ SFSSTAPSDM ENSTTRP00000010606/1-1463 AEPRQRV--- TVPPSTKALV TSLEKIQQLF RKLKLSSLSQ SFSTTTPSDV bmy_06447T0/1-1331 AEPRQRV--- TVPPLTKALV TSLEKIQQLF HRLKLSSLSQ SFSXTAPSDM BACU019796/1-1467 AEPRQRVRTA DVPPLTKALV TSLEKIQQLF HRLKLSSLSQ SFSTTAPSDM 701 750 ENSP00000313600/1-1461 DLGESLGANV ATTDSDERDD ASVCSGGDST DDGGYRSSMW DQGDILESGS ENSBTAP00000022402/1-1462 DLGESLGANI PTTDSEERDD GSVCSGGYST -DGGYKSSTW EQGDILGAGP ENSTTRP00000010606/1-1463 DLGESLGANM PTTDSEERDD ASVSSGGYST -DGGYRSSTW EQGDILGVGP bmy_06447T0/1-1331 GLGESLGANM PTTDSEERDD TSVSSGGYST -DGGYRSSTW EQGDVLGAGP BACU019796/1-1467 GLGESLGANM PTTDSEERDD TSVSSGGYST -NGGYRSSTW EQGDVLGAGP 751 800 ENSP00000313600/1-1461 GTSLEEALEA PATDLARPEF CYEAESPDEA ALVHAAHAYS FTLVSRTPEQ ENSBTAP00000022402/1-1462 RASLEEVLQA PALGLAGPEL CYEAESPDEA ALVHAARAYS FTLVSRTPEQ ENSTTRP00000010606/1-1463 GASLEEVLQD PALSLAGPEV CYEAESPDEA ALVHAARAYS FTLVSRTPKQ bmy_06447T0/1-1331 GASLEEVLQA PALSLAGPEV CYEAESPDEA ALVHAARAYS FTLVSRTPKQ BACU019796/1-1467 GASLEEVLQA PALSLAGPEV CYEAESPDEA ALVHAARAYS FTLVSRTPRQ 801 850 ENSP00000313600/1-1461 VTVRLPQGTC LTFSLLCTLG FDSVRKRMSV VVRHPLTGEI VVYTKGADSV ENSBTAP00000022402/1-1462 VTVRLPQGTC LTFDVLCTLE FDSVRKRMSV VVRHPLTGEI VIYTKGADCV ENSTTRP00000010606/1-1463 VTVRLPQGTC LTFDVLCTLE FDSVR-RMSV VVRHPLTGEI IVYTKGADCV bmy_06447T0/1-1331 VTVRLPQGTC LTFDVLCTLE FDSVRKRMSV VVRHPLTGEI VVYTKGADCI BACU019796/1-1467 VTVRLPQGTC LTFDVLCTLE FDSVRKRMSV VVRHPLTGEI VVYTKGADCV 851 900 ENSP00000313600/1-1461 IMDLLEDPAC VPDINMEKKL RKIRARTQKH LDLYARDGLR TLCIAKKVVS ENSBTAP00000022402/1-1462 IMDLLEDPAC MSDTDVEKKM RKIRARTQRH LDLYARDGLR TLCIAKKVLS ENSTTRP00000010606/1-1463 IMDLLEDPAC ATDADVEKKV RKIRAQTQRH LDLYARDGLR TLCIAKKILS bmy_06447T0/1-1331 IMDLLEDPAC ATDTDVEKKV RKIRAQTQRH LDLYARDGLR TLCIAKKILS BACU019796/1-1467 IMDLLEDPAC ATDTDVEKKV RKIRAQTQRH LDLYARDGLR TLCIAKKILS 901 950 ENSP00000313600/1-1461 EEDFRRWASF RREAEASLDN RDELLMETAQ HLENQLTLLG ATGIEDRLQE ENSBTAP00000022402/1-1462 EEDFRRWASF RRQAEASLNN RDELLLETAQ HLENQLTLLG ATGIEDRLQE ENSTTRP00000010606/1-1463 EEDFQRWASF RREAEASLNN RDELLLETAQ HLENQLILLG ATGIEDRLQE bmy_06447T0/1-1331 EEDFQRWASF RREAEASLNN RDELLMETAQ HLENQLTLLG ATGIEDRLQE BACU019796/1-1467 EEDFQRWASF RREAEASLNN RDELLMETAQ HLENQLTLLG ATGIEDRLQE 951 1000 ENSP00000313600/1-1461 GVPDTIATLR EAGIQLWVLT GDKQETAVNI AHSCRLLNQT DTVYTINTEN ENSBTAP00000022402/1-1462 GVPDTIAALR EAGIQLWVLT GDKQETAVNI AYACRLLDQT DTVYSINTES ENSTTRP00000010606/1-1463 GVPDTVAALQ EAGIRLWVLT GDKQQTAVNI AYACRLLDQK DTVYSINTES bmy_06447T0/1-1331 GVPDTVAALR EAGIRLWVLT GDKQETAVNI AYACRLLDQT DTVYSINTES BACU019796/1-1467 GVPDTVAALR EAGIRLWVLT GDKQETAVNI AYACRLLDQT DTVYSINTES 1001 1050 ENSP00000313600/1-1461 QETCESILNC ALEELKQFRE LQKPDRKLFG -FRLPSKTPS ITSEAVVPEA ENSBTAP00000022402/1-1462 QETCDSILNL ALEEVKQFHG PLKPDGKLSE -FCLPSA--P PTSGAAAPDV ENSTTRP00000010606/1-1463 QETCESILNL VLEEVKQLHG PQKPDHKLSG FFRLPSVTPP PTSGAAVPEV bmy_06447T0/1-1331 QETCESILNL VLEEVKQFHG PQKPDHKLSG -FRLPSATPP PASGAAVPEV BACU019796/1-1467 QETCESILNL VLEEVKQFHG PQKPDHKLSG -FRLPSATPP PASGATVPEV 1051 1100 ENSP00000313600/1-1461 GLVIDGKTLN AIFQGKLEKK FLELTQYCRS VLCCRSTPLQ KSMIVKLVRD ENSBTAP00000022402/1-1462 GLVIDGKTLN AIFQGKLEEK FLELTQYCRS VLCCRSTPLQ KSMLVKLVRE ENSTTRP00000010606/1-1463 GLVIDGKTLN AIFQGKLEEK FLELTQYCRS VLCCRSTPXX XXXXXXXXXX bmy_06447T0/1-1331 GLVIDGKTLN AIFQGKLEEK FLELTRYCRS VLCCRCTPLQ KSTLVKLVRD BACU019796/1-1467 GLVIDGKTLN AIFQGKLEEK FLELTQYCRS VLCCRCTPLQ KSSLVKLVRD 1101 1150 ENSP00000313600/1-1461 KLRVMTLSI- ---------- ---------- ---------- ---------- ENSBTAP00000022402/1-1462 RLRAMTLSI- ---------- ---------- ---------- ---------- ENSTTRP00000010606/1-1463 XXXXXXXXX- ---------- ---------- ---------- ---------- bmy_06447T0/1-1331 RLRVMTLSIG TRHAEMGGGS WARPLWTRGK SSSKPEKEKK KEEGQLDQDL BACU019796/1-1467 RLRVMTLSI- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000313600/1-1461 ------GDGA NDVSMIQAAD IGIGISGQEG MQAVMSSDFA ITRFKHLKKL ENSBTAP00000022402/1-1462 ------GDGA NDVSMIQAAD IGIGISGQEG MQAVMSSDFA ISRFRHLKKL ENSTTRP00000010606/1-1463 ------XDGA NDVSMIQAAD IGIGISGQEG MQAVMSSDFA ISHFRHLKKL bmy_06447T0/1-1331 MTSLLSGDGA NDVSMIQAAD VGIGISGQEG MQAVMSSDFA ISRFRHLKKL BACU019796/1-1467 ------GDGA NDVSMIQAAD VGIGISGQEG MQAVMSSDFA VSRFRHLKKL 1201 1250 ENSP00000313600/1-1461 LLVHGHWCYS RLARMVVYYL YKNV------ ---------- ---------- ENSBTAP00000022402/1-1462 LLVHGHWCYS RLARMVVYYF YKNV------ ---------- ---------- ENSTTRP00000010606/1-1463 LLVHGHWCYS RLARMVAYYF YKNV------ ---------- ---------- bmy_06447T0/1-1331 LLVHGHWCYS RLARMVVYYF YKNVGLVRAP KQHLVTRLPA GPHSQGRTLC BACU019796/1-1467 LLVHGHWCYS RLARMVVYYF YKNV------ ---------- ---------- 1251 1300 ENSP00000313600/1-1461 --CYVNLLFW YQFFCGFSSS TMIDYWQMIF FNLFFTSLPP LVFGVLDKDI ENSBTAP00000022402/1-1462 --CYVNLLFW YQFFCGFSGS TMIDYWQLIF FNLFFTSLPP LVFGVLDKDI ENSTTRP00000010606/1-1463 --GYVNLLFW YQFFCGFSGS TMIDYWQLIF FNLFFTSLPP LVFGVLDKDV bmy_06447T0/1-1331 LQGYVNLLFW YQFFCGFSGS TMIDYWQLIF FNLFFTSLPP LVFGVLDKDI BACU019796/1-1467 --GYVNLLFW YQFFCGFSGS TMIDYWQLIF FNLFFTSLPP LVFGVLDKDI 1301 1350 ENSP00000313600/1-1461 SAETLLALPE LYKSGQNSEC YNLSTFWISM VDAFYQSLIC FFIPYLAYKG ENSBTAP00000022402/1-1462 SMETLLALPE LYKSGQNSEC YNLLTFWISM ADAFYQSLVC FFIPYLTYKD ENSTTRP00000010606/1-1463 SMETLLALPE LYKSGQNSEC YNLLTFWISM ADAFYQSLVC FFIPYLTYKD bmy_06447T0/1-1331 SMETLLALPE LYKSGQNSEC YNLLTFWISM ADAFYQSLVC FFIPYLTYKD BACU019796/1-1467 SMETLLALPE LYKSGQNSEC YNLLTFWISM ADAFYQSLVC FFIPYLTYKD 1351 1400 ENSP00000313600/1-1461 SDIDVFTFGT PINTISLTTI LLHQAMEMKT WTIFHGVVLL GSFLMYFLVS ENSBTAP00000022402/1-1462 SDIDVFTFGT PINTISLATI LLHQAMEMKT WTTIHGLVLA GSFLMYFVVS ENSTTRP00000010606/1-1463 SDIDIFTFGT PINTVSLATI LLHQAMEMKT WTIIHGLVLA GSFLMYFVVS bmy_06447T0/1-1331 SDIDVFTFGT PINTVSLATI LLHQAMEMKT WTIIHGLVLA GSFLMYFVVS BACU019796/1-1467 SDIDVFTFGT PINTVSLATI LLHQAMEMKT WTIIHGLVLA GSFLMYFVVS 1401 1450 ENSP00000313600/1-1461 LLYNATCVIC NSPTNPYWVM EGQLSNPTFY LVCFLTPVVA LLPRYFFLSL ENSBTAP00000022402/1-1462 LAYNAICVTC NSPTNPYWVM EGQLSDPTFY LVCFLTPAVA LLPRYIFLTL ENSTTRP00000010606/1-1463 LVYNATCVTC NSPINPYWVM EGQLSDPTFY LVCFLTPVVA LLPRYFLLAL bmy_06447T0/1-1331 LVYNATCVIC NSPINPYRVM EGQLSDPTFY LVCFLTPVVA LLPRYFFLAL BACU019796/1-1467 LVYNATCVIC NSPINPYRVM EGQLSDPTFY LVCFLTPVVA LLPRYFFLAL 1451 1500 ENSP00000313600/1-1461 QGTCGKSLIS KAQKIDKLPP DKRNLEIQSW RSRQRPAPVP EVARPTHHPV ENSBTAP00000022402/1-1462 QGTYGKSPIL RAQKIDKLPV DKRELEIQSW RSHQRPATIP GEAQPTNRLG ENSTTRP00000010606/1-1463 QGTYGKSLIL KAQKIDKLPM DKRELEIRSW RSRQRPATVP GEAQPTHRPG bmy_06447T0/1-1331 QGTYGKSPIL KAQKIDKLPM DKRELEIQSW RSRQRPATVP GEAQPTHRPG BACU019796/1-1467 QGTYGKSLIL KAQKIDKLPM DKRELEIQSW RSRQRPATVP GEAQPTHRPG 1501 1550 ENSP00000313600/1-1461 SSITGQDFSA STPKSSNPPK RKHVEESVLH EQRCGTECMR DDSCSGDSSA ENSBTAP00000022402/1-1462 SPASDQSFRS STPKNLSPAK RRYEEDWVLP GERCSRDHTR DDSYSADSWA ENSTTRP00000010606/1-1463 PPAPEPSFRA STPKSSSPME CKYKEDWVLP GERSSGDHIR DDPCSRDSWA bmy_06447T0/1-1331 PPAPEQSFRA STPKSSSPVE CKSEEDWVLP GERCSGDHIR DDPCSRDSWA BACU019796/1-1467 PPAPEQSFRA STPKSSSPVE CKSKEDWVLP GERCSGDHIR DDPCSRDSWA 1551 1600 ENSP00000313600/1-1461 QLSSGEH-LL GPNRIM---A YSRGQTDMCR CSKRSSHRRS QSSLTI ENSBTAP00000022402/1-1462 KFSSGEHLLL EPSRMVASGA YSSGQTNSNR PFSRGGHRRS QSSLTI ENSTTRP00000010606/1-1463 KFSSGEHLLL EPSRMMASGA YSSGQTKSNR PFSRGSHRRS QSSVTI bmy_06447T0/1-1331 KFSSGEHLLL EPSRMMASGA YSSGQTNSNR PFSQGSHRRS QSSLTM BACU019796/1-1467 QFSSGEHLLL ELSRMTASGA YSSGQTNSNR PFSQGSHRRS QSSLTI