KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:24 2014 Check: 00 .. Name: ENSP00000299164/1-950 Len: 992 Check: 2217 Weight: 1.00 Name: ENSBTAP00000022420/1-939 Len: 992 Check: 2517 Weight: 1.00 Name: ENSTTRP00000013876/1-950 Len: 992 Check: 7197 Weight: 1.00 Name: BACU010160/1-792 Len: 992 Check: 7796 Weight: 1.00 Name: bmy_12497T0/1-624 Len: 992 Check: 3565 Weight: 1.00 // 1 50 ENSP00000299164/1-950 MLLLGILTLA FAGRTAGGSE PEREVVVPIR LDPDINGRRY YWRGPEDSGD ENSBTAP00000022420/1-939 MLLLGILMLV LAGAPAGGSE PEREVVVPIR LDPDINGRHY YWQGPEDSGD ENSTTRP00000013876/1-950 MLLLGILTLA LAGAPAGGSE PEREVVVPIR LDPDINGRHY YWRGPEDSGD BACU010160/1-792 ---------- ---------- ---------- -------MLS SWRPP----- bmy_12497T0/1-624 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000299164/1-950 QGLIFQITAF QEDFYLHLTP DAQFLAPAFS TEHLGVPLQG LTGGSSDLRR ENSBTAP00000022420/1-939 QGLIFQITAF QEDFYLHLTP DAQFLAPAFA TEHLGVPLQG LIRSSPDLRR ENSTTRP00000013876/1-950 QGLIFQITAF QEDFYLHLTP DAQFLAPAFA TEHLGVPLQG LIGSSPDLRR BACU010160/1-792 ---------- --------SP LNIWASPS-- ---------- -RDSSGALRX bmy_12497T0/1-624 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000299164/1-950 CFYSGDVNAE PDSFAAVSLC GGLRGAFGYR GAEYVISPLP NASAPAAQRN ENSBTAP00000022420/1-939 CFYSGDVNAE PDSFAALSLC GGLRGAFGYR GAEYVISPLP NTSAPATQRN ENSTTRP00000013876/1-950 CFYSGDVNAE PDSFAALSLC GGLRGAFGYR GAEYVISPLP NARAPAAQRN BACU010160/1-792 XXXX--XXAE PDSFAALSLC GGLRGAFGYR GAEYVISPLP NARAPAAQRN bmy_12497T0/1-624 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000299164/1-950 SQGAHLLQRR GVPGGPSGDP TSRCGVASGW NPAILRALDP YKPRRAGFGE ENSBTAP00000022420/1-939 SQGAHLLQRR GAPGGPPGDS TSRCGVGSGW NPAILRALDP YIPRRIGLGE ENSTTRP00000013876/1-950 SQGAHLLQRR GTPGGPPAGP KSRCGVASGW NPSILQALDP YKPQRIGLGE BACU010160/1-792 GQRAHLLQRR GTPGGPPAGP TSRCGVASSW NPSILRALDP YKPPRIGLGE bmy_12497T0/1-624 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000299164/1-950 SRSRRRSGRA KRFVSIPRYV ETLVVADESM VKFHGADLEH YLLTLLATAA ENSBTAP00000022420/1-939 ARSRRRSGRA KRFVSIPRYV ETLVVADESM VKFHGADLEH YLLTLLATAA ENSTTRP00000013876/1-950 GRSPRRSGRA KRFVSIPRYV ETLVVADESM VKFHGADLEH YLLTLLATAA BACU010160/1-792 GRSPRRSGRA KRFVSIPRYV ETLVVADESM VKFHGADLEH YLLTLLATAA bmy_12497T0/1-624 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000299164/1-950 RLYRHPSILN PINIVVVKVL LLRDRDSGPK VTGNAALTLR NFCAWQKKLN ENSBTAP00000022420/1-939 RLYRHPSILN PINIVVVKVL LLGDRDTGPK VTGNAALTLR NFCAWQKKLN ENSTTRP00000013876/1-950 RLYRHPSILN PINIVVVKVL LLGDRDTGPK VTGNAALTLR NFCAWQKKLN BACU010160/1-792 RLYRHPSILN PINIVVVKVL LLGDRDTGPK VTGNAALTLR NFCAWQKKLN bmy_12497T0/1-624 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000299164/1-950 KVSDKHPEYW DTAILFTRQD LCGATTCDTL GMADVGTMCD PKRSCSVIED ENSBTAP00000022420/1-939 KVSDKHPEYW DTAILFTRQD LCGATTCDTL GMADVGTMCD PKRSCSVIED ENSTTRP00000013876/1-950 KVSDKHPEYW DTAILFTRQD LCGATTCDTL GMADVGTMCD PKRSCSVIED BACU010160/1-792 KVSDKHPEYW DTAILFTRQD LCGATTCDTL GMADVGTMCD PKRSCSVIED bmy_12497T0/1-624 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000299164/1-950 DGLPSAFTTA HELGHVFNMP HDNVKVCEEV FGKLRANHMM SPTLIQIDRA ENSBTAP00000022420/1-939 DGLPSAFTTA HELGHVFNMP HDNVKVCEEV FGKLRGNHMM SPTLIQIDRA ENSTTRP00000013876/1-950 DGLPSAFTTA HELGHVFNMP HDNVKVCEEV FGKLRGNHMM SPTLIQIDRA BACU010160/1-792 DGLPSAFTTA HELGHVFNMP HDNVKVCEEV SGKLRGNHMM SPTLIQIDRA bmy_12497T0/1-624 ---------- --------MP HDNVKVCEDV SGKLRGNHMM SPTLIQIDRA 401 450 ENSP00000299164/1-950 NPWSACSAAI ITDFLDSGHG DCLLDQPSKP ISLPEDLPGA SYTLSQQCEL ENSBTAP00000022420/1-939 NPWSACSAAI VTDFLDSGHG DCLLDQPSKP VSLPEDLPGA SYPLSQQCEL ENSTTRP00000013876/1-950 NPWSACSAAI VTDFLDSGHG DCLLDEPSKP VSLPEDLPGA SYPLSQQCEL BACU010160/1-792 NPWSACSAAI VTDFLDSGHG DCLLDEPSKP VSLPEDLPGA SYPLSQQCEL bmy_12497T0/1-624 NPWSACSAAI VTDFLDSGHG DCLLDEPSKP VSLPEDLPGA SYPLSQQCEL 451 500 ENSP00000299164/1-950 AFGVGSKPCP YMQYCTKLWC TGKAKGQMVC QTRHFPWADG TSCGEGKLCL ENSBTAP00000022420/1-939 AFGVGSKPCP YMQSCTKLWC TGKARGQMVC QTRHFPWADG TGCGEGRFCL ENSTTRP00000013876/1-950 AFGVGSKPCP YMQRCSKLWC TGKAKGQTLC QTRHFPWADG TSCGDGSFCL BACU010160/1-792 AFGLGSKPCP YMQRCSKLWC TGKAKGQTLC QTRHFPWADG TSCGDGSSCL bmy_12497T0/1-624 AFGLGSKPCP YMQRCSKLWC TGKAKGQTLC QTRHFPWADG TSCGDGSFCL 501 550 ENSP00000299164/1-950 KGACVERHNL NKHR------ ---------- ---------- ---------- ENSBTAP00000022420/1-939 KGACVERHNP NKYR------ ---------- ---------- ---------- ENSTTRP00000013876/1-950 KGACVERRSL GKHR------ ---------- ---------- ---------- BACU010160/1-792 KGACVERRSL SEHR------ ---------- ---------- ---------- bmy_12497T0/1-624 KGACVERRSL SKHRILVGFV PVGWHGGGCP RGAPGQAQRV GAVPRPRRDI 551 600 ENSP00000299164/1-950 ------VDGS WAKWDPYGPC SRTCGGGVQL ARRQCTNPTP ANGGKYCEGV ENSBTAP00000022420/1-939 ------VDGS WAKWEPYGPC SRTCGGGVQL ARRQCSNPTP ANGGKYCEGV ENSTTRP00000013876/1-950 ------VDGS WSKWEPYGPC SRTCGGGVQL ARRQCSSPAP ANGGKYCEGV BACU010160/1-792 ------VDGS WAKWEPYGPC SRTCGGGVQL ARRQCSSPAP ANGGKYCEGV bmy_12497T0/1-624 TDPSSQVDGS WAKWEPYGPC SRTCGGGVQL ARRQCSSPAP ANGGKYCEGV 601 650 ENSP00000299164/1-950 RVKYRSCNLE PCPSSASGKS FREEQCEAFN GYNHSTNRLT LAVAWVPKYS ENSBTAP00000022420/1-939 RVKYRSCNLE SCPSSASGKS FREEQCEAFN GYNHSTNRLT LAVAWVPKYS ENSTTRP00000013876/1-950 RVKYRSCSLE SCPSSASGKS FREEQCEAFN GYNRSTNRLS LAVAWVPKYS BACU010160/1-792 RVKYRSCSLE SCPSSASGKS FREEQCQAFN GYNHSTNRLT LAVAWVPKYS bmy_12497T0/1-624 RVKYRSCSLE SCPSSASGKS FREEQCQAFN GYNHSTNRLT LAVAWVPKYS 651 700 ENSP00000299164/1-950 GVSPRDKCKL ICRANGTGYF YVLAPKVVDG TLCSPDSTSV CVQGKCIKAG ENSBTAP00000022420/1-939 GVSPRDKCKL ICRANGTGYF YVLAPKVVDG TPCTPDSTSV CVQGKCIKAG ENSTTRP00000013876/1-950 GVSPRDKCKL ICRANGTGYF YVLAPKVVDG TLCTPDSTSV CVQGKCIKAG BACU010160/1-792 GVSPRDKCKL ICRANGTGYF YVLAPKVVDG TLCTPDSTSV CVQGKCIKAG bmy_12497T0/1-624 GVSPRDKCKL ICRANGTGYF YVLAPKVVDG TLCTPDSTSV CVQGKCIKAG 701 750 ENSP00000299164/1-950 CDGNLGSKKR FDKCGVCGGD NKSCKKVTGL FTKPMHGYNF VVAIPAGASS ENSBTAP00000022420/1-939 CDGNLGSKKK FDKCGVCGGD NKSCKKVSGL FTKPMHGYNF VVAIPAGASS ENSTTRP00000013876/1-950 CDGNLGSKKK FDKCGVCGGD NKSCKKVSGL FTKPMHGYNF VVAIPAGASS BACU010160/1-792 CDGNLGSKKK FDKCGVCGGD NKSCKKVSGL FTKPMHGYNF VVAIPAGASS bmy_12497T0/1-624 CDGNLGSKKK FDKCGVCGGD NKSCKKVSGL FTKPMHGYNF VVAIPAGASS 751 800 ENSP00000299164/1-950 IDIRQRGYKG LIGDDNYLAL KNSQGKYLLN GHFVVSAVER DLVVKGSLLR ENSBTAP00000022420/1-939 IDIRQRGYKG LIGDDNYLAL KNSQGKYLLN GHFVVSAVER DLVVKGSLLR ENSTTRP00000013876/1-950 IDIRQRGYKG LIGDDNYLAL KNSQGKYLLN GHFVVSAVER DLVVKGSLLR BACU010160/1-792 IDIRQRGYKG LIGDDNYLAL KNSQGKYLLN GHFVVSAVER DLVVKGSVLR bmy_12497T0/1-624 IDIRQRGYKG LIGDDNYLAL KNSQGKYLLN GHFVVSAVER DLVVKGSLLR 801 850 ENSP00000299164/1-950 YSGTGTAVES LQASRPILEP LTVEVLSVGK MTPPRVRYSF YLPKEPREDK ENSBTAP00000022420/1-939 YSGTGTAVES LQASRPILEP LTVEVLSVGK MTPPRVRYSF YLPKE----- ENSTTRP00000013876/1-950 YSGTGTAVES LQASRPILEP LTVEVLSVGK MTPPRVRYSF YLPKEPREDR BACU010160/1-792 YSGTGTAVES LQASRPILEP LTVEVLSVGK MTPPRVRYSF YLPKEPREDR bmy_12497T0/1-624 YSGTGTAVES LQASRPILEP LTVEVLSVGK MTPPRVRYSF YLPKEPREDR 851 900 ENSP00000299164/1-950 SSHPKDPRGP SVLHNSVLSL SNQVEQPDDR PPARWVAGSW GPCSASCGSG ENSBTAP00000022420/1-939 ------PRAP SVHHNSVLSF SNQVEQPDAR APARWMAGSW GPCSASCGGG ENSTTRP00000013876/1-950 ASPPTDPRAP SVLHNSVLSL SNQVEQPDAG APARWVAGSW GPCSASCGGG BACU010160/1-792 APPPPGPRAP SVLHNS---- ---------- ---------- ---------- bmy_12497T0/1-624 APPPTGPRAP SVLHNSVLSL SNQVEQPDAR PPARWVAGSW GPCSASCGGG 901 950 ENSP00000299164/1-950 LQKRAVDCRG SAGQRTVPAC DAAHRPVETQ ACGEPCPTWE LSAWSPCSKS ENSBTAP00000022420/1-939 LQRRPVDCRE SPGQRGASTC DAAHRPAETR SCGEPCPTWE LGAWSPCSKS ENSTTRP00000013876/1-950 LQRRPVDCRG PPGQRGASAC DAAHRPADTR ACGDPCPAWE LGAWSPCSKS BACU010160/1-792 ---------- ---------- ---------- ---------- ---------S bmy_12497T0/1-624 LQRRPVDCRG PPGQRGASAC DAAHRPADAR ACGEPCPAWE LGAWSPCSKS 951 1000 ENSP00000299164/1-950 CGRGFQRRSL KCVGHGGRLL ARDQCNLHRK PQELDFCVLR PC ENSBTAP00000022420/1-939 CGRGFKRRPL KCLGHGGRLL ARDQCDLRRK PQELDFCILR PC ENSTTRP00000013876/1-950 CGRGFKRRPL KCVGHGGRLL ARDRCNLRRK PQELDFCVLR PC BACU010160/1-792 CGRGFKRRPL KCVGHGGRLL ARDRCNLRRK PQELDFCVLR PC bmy_12497T0/1-624 CGRGFKRRPL KCVGHGGRLL ARDRCNLRRK PQELDFCVLR PC