KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:17:25 2014  Check: 00 ..

 Name: ENSP00000389335/1-149     Len:    159  Check:  1223  Weight:  1.00
 Name: ENSBTAP00000022450/1-159  Len:    159  Check:  2624  Weight:  1.00
 Name: ENSTTRP00000016186/1-143  Len:    159  Check:  5799  Weight:  1.00
 Name: bmy_20147T0/1-146         Len:    159  Check:  3356  Weight:  1.00
 Name: BACU005726/1-118          Len:    159  Check:  4807  Weight:  1.00

//


                          1                                                   50
ENSP00000389335/1-149     ------MKVI AILT--LLLF C--SPTHSSF WQFQRRVKHI TGRSAFFSYY 
ENSBTAP00000022450/1-159  SDIAIKSSMF SIYVYILLIF LIMAPTHSSF WQFQRMVKHI TGRSAFFSYY 
ENSTTRP00000016186/1-143  -----FLGAS SFFL--IFSL AVMAPTHGSF WQFQRMVKHI TGQRAFFSNY 
bmy_20147T0/1-146         ------MKVF GVLV--VFVS CLMAPTHGSF WQFQRMVKHI TGRSAFFPNY 
BACU005726/1-118          ------MKVF GVLV--VFVS CLMAPTHGSF WQFRRMVKHI TGRSAFFSNY 


                          51                                                 100
ENSP00000389335/1-149     GYGCYCGLGD KGIPVDDTDR HSPSSPSPYE KLKEFSCQPV LNSYQFHIVN 
ENSBTAP00000022450/1-159  GYGCYCGLGG KGTPVDNTDR CCLAHDCCYE RVKHLGCQPV LNGYQFRVVN 
ENSTTRP00000016186/1-143  GYGCYCGPGG VGVPMDDT-- ASLASNCC-E KLKQLSFQLV LNGYRFRVAN 
bmy_20147T0/1-146         GYGCYCGLGG IGTPVDDTDS CCLAHDCCYE KLKWLSCQPV LNGYQFHVAN 
BACU005726/1-118          GYGCYCGLGG IGTPVDDTDR CCLAHDCCYE KLKRLSCQPV LNGYQFHVAN 


                          101                                                150
ENSP00000389335/1-149     GAVVCGCTLG PGASCHCRLK ACECDKQSVH CFKESLPTYE KNFKQFSSQP 
ENSBTAP00000022450/1-159  GTVICECALG PGVSCLCGLR ACECDTQSAY CFRENLPTYE KNFKQLSSRP 
ENSTTRP00000016186/1-143  GTVVFECALG PGVGCLCGLR ACECDTQS-- -FKENLPNFK RFF---SSWP 
bmy_20147T0/1-146         GTVIFECALG PGVGCLRGLR ACECDTQSA- -SKRTCPNFK QFF---SSWP 
BACU005726/1-118          GTVI------ ---------- ---CFSLGH- -VQLNAP--- LVL---VSAA 


                          151                                                200
ENSP00000389335/1-149     RCGRHKPWC 
ENSBTAP00000022450/1-159  HCGKHRPQC 
ENSTTRP00000016186/1-143  RCGRSKPQC 
bmy_20147T0/1-146         RCGRRKLQC 
BACU005726/1-118          SVG------