KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:26 2014 Check: 00 .. Name: ENSTTRP00000007322/1-955 Len: 1008 Check: 3205 Weight: 1.00 Name: ENSP00000262144/1-974 Len: 1008 Check: 8777 Weight: 1.00 Name: bmy_20384T0/1-871 Len: 1008 Check: 4961 Weight: 1.00 Name: BACU018189/1-993 Len: 1008 Check: 738 Weight: 1.00 Name: ENSBTAP00000022452/1-974 Len: 1008 Check: 8292 Weight: 1.00 // 1 50 ENSTTRP00000007322/1-955 ---------- --------AT AMSVDCLGQH AVLSGRRFLY IVSLDAPFEG ENSP00000262144/1-974 MAARWSSENV VVEFRDSQAT AMSVDCLGQH AVLSGRRFLY IVNLDAPFEG bmy_20384T0/1-871 MAARWSSENV VVEFRDSQAT AMSVDCLGQH AVLSG--LSS AVTVQDGF-- BACU018189/1-993 MAARWSSENV VVEFRDSQAT AMSVDCLGQH AVLSGRRFLY IVNLDAPFEG ENSBTAP00000022452/1-974 MAARWSSENV VVEFRDSQAT AMSVDCVGQH AVLSGRRFLY IVNLDAPFEG 51 100 ENSTTRP00000007322/1-955 HRKISRQSKW DIGAVQWNPH DSFAHYFAAS SNQRVDLYKW KDGSGEVSTT ENSP00000262144/1-974 HRKISRQSKW DIGAVQWNPH DSFAHYFAAS SNQRVDLYKW KDGSGEVGTT bmy_20384T0/1-871 ---------- --------PL VSF------Q SNQRVDLYKW KDGSGEVGTT BACU018189/1-993 HRKISRQSKW DIGAVQWNPH DSFAHYFAAS SNQRVDLYKW KDGSGEVGTT ENSBTAP00000022452/1-974 HRKISRQSKW DIGAVQWNPH DSFAHYFAAS SNQRVDLYKW KDGSGEVGTT 101 150 ENSTTRP00000007322/1-955 LQGHTRVISD LDWAVFEPDL LVTSSVDTYI YIWDIKDTRK PTVALSAVAG ENSP00000262144/1-974 LQGHTRVISD LDWAVFEPDL LVTSSVDTYI YIWDIKDTRK PTVALSAVAG bmy_20384T0/1-871 LQGHTRVISD LDWAVFEPDL LVTSSVDTYI YIWDIKDTRK PTVALSAVAG BACU018189/1-993 LQGHTRVISD LDWAVFEPDL LVTSSVDTYI YIWDIKDTRK PTVALSAVAG ENSBTAP00000022452/1-974 LQGHTRVISD LDWAVFEPDL LVTSSVDTYI YIWDIKDTRK PTVALSAVAG 151 200 ENSTTRP00000007322/1-955 ASQV-WNKKN ANCLVTSHDG DVRIWDKRKP STAVEYLAAH LSKIHGLDWH ENSP00000262144/1-974 ASQVKWNKKN ANCLATSHDG DVRIWDKRKP STAVEYLAAH LSKIHGLDWH bmy_20384T0/1-871 ASQVKWNKKN ANCLATSHDG DVRIWDKRKP STAVEYLAAH LSKIHGLDWH BACU018189/1-993 ASQVKWNKKN ANCLATSHDG DVRIWDKRKP STAVEYLAAH LSKIHGLDWH ENSBTAP00000022452/1-974 ASQVKWNKKN ANCLATSHDG DVRIWDKRKP STAVEYLAAH LSKIHGLDWH 201 250 ENSTTRP00000007322/1-955 PDSEHILATS SQDNSVKFWD YRQPRKYLNI LPCQVPVWKA RYTPFSNGLV ENSP00000262144/1-974 PDSEHILATS SQDNSVKFWD YRQPRKYLNI LPCQVPVWKA RYTPFSNGLV bmy_20384T0/1-871 PDSEHVLATS SQDNSVKFWD YRQPRKYLNI LPCQVPVWKA RYTPFNNGLV BACU018189/1-993 PDSEHILATS SQDNSVKFWD YRQPRKYLNI LPCQVPVWKA RYTPFSNGLV ENSBTAP00000022452/1-974 PDSEHILATS SQDNSVKFWD YRQPRKYLNI LPCQVPVWKA RYTPFSNGLV 251 300 ENSTTRP00000007322/1-955 TVMVPQLRRE NSLLLWNVFD LNTPVHTFVG HDDVVLEFQW RKQKEGSKDY ENSP00000262144/1-974 TVMVPQLRRE NSLLLWNVFD LNTPVHTFVG HDDVVLEFQW RKQKEGSKDY bmy_20384T0/1-871 TVMVPQLRRE NSLLLWNVFD LNTPVHTFVG HDDVVLEFQW RKQKEGSKDY BACU018189/1-993 TVMVPQLRRE NSLLLWNVFD LNTPVHTFVG HDDVVLEFQW RKQKEGSKDY ENSBTAP00000022452/1-974 TVMVPQLRRE NSLLLWNVFD LNTPVHTFVG HDDVVLEFQW RKQKEGSKDY 301 350 ENSTTRP00000007322/1-955 QLVTWSRDQT LRMWRVDSQM QRLCANDILD GVDEFIESIA LLPEPEKTLH ENSP00000262144/1-974 QLVTWSRDQT LRMWRVDSQM QRLCANDILD GVDEFIESIS LLPEPEKTLH bmy_20384T0/1-871 QLVTWSRDQT LRMWRVDSQM QRLCANDILD GVDEFIESIA LLPEPEKTLH BACU018189/1-993 QLVTWSRDQT LRMWRVDSQM QRLCANDILD GVDEFIESIA LLPEPEKTLH ENSBTAP00000022452/1-974 QLVTWSRDQT LRMWRVDSQM QRLCANDILD GVDEFIESIA LLPEPEKILH 351 400 ENSTTRP00000007322/1-955 TQDTDHQHNS SHGEEEVLKE DPPSSLLEEK KSEQLGLPQT LQQEFSLINV ENSP00000262144/1-974 TEDTDHQHTA SHGEEEALKE DPPRNLLEER KSDQLGLPQT LQQEFSLINV bmy_20384T0/1-871 TQDTDHQHNS SHGEEEVLKE DPPSSLLEEK KSEQLGLPQT LQQEFSLINV BACU018189/1-993 TQDTDHQHNS SHGEEEVLKE DPPSSLLEEK KAEQLGLPQT LQQEFSLINV ENSBTAP00000022452/1-974 TQDTDHQHNS SHGEEEVLKE DPPSSLLEEK KSEQLGLPQT LQQEFSLINV 401 450 ENSTTRP00000007322/1-955 QIRNVNVE-- ---------- ---MDAADRS CTVSVHCSNH RVKMLVKFPA ENSP00000262144/1-974 QIRNVNVE-- ---------- ---MDAADRS CTVSVHCSNH RVKMLVKFPA bmy_20384T0/1-871 QIRNVNVEVL GLSELSLACG WRLMDAADRS CTVSVHCSNH RVKMLVKFPA BACU018189/1-993 QIRNVNVE-- ---------- ---MDAADRS CTVSVHCSNH RVKMLVKFPA ENSBTAP00000022452/1-974 QIRNVNVE-- ---------- ---MDAADRS CTVSVHCSSH RVKMLVKFPA 451 500 ENSTTRP00000007322/1-955 QYPNHAAPSF QFINPTTITS TMKAKLLKXX XXXXXXXXXX XXXXXXXXXX ENSP00000262144/1-974 QYPNNAAPSF QFINPTTITS TMKAKLLKIL KDTALQKVKR GQSCLEPCLR bmy_20384T0/1-871 QYPNHAAPSF QFINPTTITS TMKAKLLKIL KDTSLQKVKR NQSCLEPCLR BACU018189/1-993 QYPNHAAPSF QFINPTTITS TMKAKLLKIL KDTSLQKVKR NQSCLEPCLR ENSBTAP00000022452/1-974 QYPNHAAPSF QFINPTTITS TMKAKLLKIL KDTSLQKVKR NQSCLEPCLR 501 550 ENSTTRP00000007322/1-955 XXXXXXXXXX NQEDSASSNP FALPNSVTPP LPTFARVTTA YGSYQDANIP ENSP00000262144/1-974 QLVSCLESFV NQEDSASSNP FALPNSVTPP LPTFARVTTA YGSYQDANIP bmy_20384T0/1-871 QLVSCLESFV NQEDSASSNP FALPNSVTPP LPTFARVTTA YGSYQDANIP BACU018189/1-993 QLVSCLESFV NQEDSASSNP FALPNSVTPP LPTFARVTTA YGSYQDANIP ENSBTAP00000022452/1-974 QLVSCLESFV NQEDSASSNP FALPNSVTPP LPTFARVTTA YGSYQDANIP 551 600 ENSTTRP00000007322/1-955 FPRTSGARFC GAGYLVYFTR PMTMHRAVSP TEPTPXXXXX XXXXXXXXXX ENSP00000262144/1-974 FPRTSGARFC GAGYLVYFTR PMTMHRAVSP TEPTPRSLSA LSAYHTGLIA bmy_20384T0/1-871 FPRTSGARFC GAGYLVYFTR PMTMHRAVSP TEPTPRSLSA LSAYHTGLIA BACU018189/1-993 FPRTSGARFC GAGYLVYFTR PMTMHRAVSP TEPTPRSLSA LSAYHTGLIA ENSBTAP00000022452/1-974 FPRTSGARFC GAGYLVYFTR PMTMHRAVSP TEPTPRSLSA LSAYHTGLIA 601 650 ENSTTRP00000007322/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ---------- ENSP00000262144/1-974 PMKIRTEAPG NLRLYSGSPT RSEKEQVSIS SFYYKER--- ---------- bmy_20384T0/1-871 PMKIRTEAPG NLRLYSGSPT RSEKEQVSIS SFYYKER--- ---------- BACU018189/1-993 PMKIRTEAPG NLRLYSGSPT RSEKEQVSIS SFYYKERMSP RSARRRWSIQ ENSBTAP00000022452/1-974 PMKIRTEAPG NLRLYSGSPT RSEKEQVSIS SFYYKER--- ---------- 651 700 ENSTTRP00000007322/1-955 ------KSRR WKSKREGSDS GNRPIKAAGK VIIQDIACLL PVHKSLGELY ENSP00000262144/1-974 ------KSRR WKSKREGSDS GNRQIKAAGK VIIQDIACLL PVHKSLGELY bmy_20384T0/1-871 ------KSRR WKSKREGSDS GNRPIKAAGK VIIQDIACLL PVHKSLGELY BACU018189/1-993 AINDFPKSRR WKSKREGSDS GNRPIKAAGK VIIQDIACLL PVHKSLGELY ENSBTAP00000022452/1-974 ------KSRR WKSKREGSDS GNRPIKAAGK VIIQDIACLL PVHKSLGELY 701 750 ENSTTRP00000007322/1-955 ILNVNDIQET CQKNATSALL VGRKDLVQVW SLATVATDLC LGPKSDPDLE ENSP00000262144/1-974 ILNVNDIQET CQKNAASALL VGRKDLVQVW SLATVATDLC LGPKSDPDLE bmy_20384T0/1-871 ILNVNDIQET CQKNATSALL VGRKDLVQVW SLATVATDLC LGPKSDPDLE BACU018189/1-993 ILNVNDIQET CQKNATSALL VGRKDLVQVW SLATVATDLC LGPKSDPDLE ENSBTAP00000022452/1-974 ILNVNDIQET CQKNAASALL VGRKDLVQVW SLATVATDLC LGPKSDPDLE 751 800 ENSTTRP00000007322/1-955 TPWARHPFGR QLLESLLAHY CRLRDVQTLA MLCSVFEAQS RPQGIPNPFG ENSP00000262144/1-974 TPWARHPFGR QLLESLLAHY CRLRDVQTLA MLCSVFEAQS RPQGLPNPFG bmy_20384T0/1-871 TPWARHPFGR QLLESLLAHY CRLRDVQTLA MLCSVFEAQS RPQGIPNPFG BACU018189/1-993 TPWARHPFGR QLLESLLAHY CRLRDVQTLA MLCSVFEAQS RPQGIPNPFG ENSBTAP00000022452/1-974 TPWARHPFGR QLLESLLAHY CRLRDVQTLA MLCSVFEAQS RPQGIPNPFG 801 850 ENSTTRP00000007322/1-955 PFPSRSSNLV VSHSRYPSFT SSGSCSSMSD PGFNTGGWNI VGRETEHISS ENSP00000262144/1-974 PFPNRSSNLV VSHSRYPSFT SSGSCSSMSD PGLNTGGWNI AGREAEHLSS bmy_20384T0/1-871 PFPSRSSNLV VSHSRYPSFT SSGSCS---- ---------- MGRETEHISS BACU018189/1-993 PFPSRSSNLV VSHSRYPSFT SSGSCSSMSD PGFNTGGWNI VGRETEHISS ENSBTAP00000022452/1-974 PFPSRSANLV VSHSRYPSFT SSGSCSSLSD PGFNTGGWNI VGRETEHISS 851 900 ENSTTRP00000007322/1-955 PWGESSPEEI RFGSLTYSDP RERERDQHDK NKRLLDPANT QQFDDFKKCY ENSP00000262144/1-974 PWGESSPEEL RFGSLTYSDP RERERDQHDK NKRLLDPANT QQFDDFKKCY bmy_20384T0/1-871 PWGESSPEEI RFGSLTYSDP RERERDQHDK NKRLLDPANT QQFDDFKKCY BACU018189/1-993 PWGESSPEEI RFGSLTYSDP RERERDQHDK NKRLLDPANT QQFDDFKKCY ENSBTAP00000022452/1-974 PWGESSPEEI RFGSLTYSDP RERERDQHDK NKRLLDPANT QQFDDFKKCY 901 950 ENSTTRP00000007322/1-955 GEILYRWGLR EKRAEVLKFV SCPPDPHKGI EFGVYCSHCR SEVRGTQCAI ENSP00000262144/1-974 GEILYRWGLR EKRAEVLKFV SCPPDPHKGI EFGVYCSHCR SEVRGTQCAI bmy_20384T0/1-871 GEILYRWGLR EKRAEVLKFV SCPPDPHKGI ---------- ---------- BACU018189/1-993 GEILYRWGLR EKRAEVLKFV SCPPDPHKGI EFGVYCSHCR SEVRGTQCAI ENSBTAP00000022452/1-974 GEILYRWGLR EKRAEVLKFV SCPPDPHKGI EFGVYCSHCR SEVRGTQCAI 951 1000 ENSTTRP00000007322/1-955 CKGFTFQCAI CHVAVRGSSN FCLTCGHGGH TSHMMEWFRT QEVCPTGCGC ENSP00000262144/1-974 CKGFTFQCAI CHVAVRGSSN FCLTCGHGGH TSHMMEWFRT QEVCPTGCGC bmy_20384T0/1-871 ---------- ------GE-- ---------- ---------- ---------- BACU018189/1-993 CKGFTFQCAI CHVAVRGSSN FCLTCGHGGH TSHMMEWFRT QEVCPTGCGC ENSBTAP00000022452/1-974 CKGFTFQCAI CHVAVRGSSN FCLACGHGGH TSHMMEWFRT QEVCPTGCGC 1001 1050 ENSTTRP00000007322/1-955 HCLLESTF ENSP00000262144/1-974 HCLLESTF bmy_20384T0/1-871 -------- BACU018189/1-993 HCLLESTF ENSBTAP00000022452/1-974 HCLLESTF