KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:27 2014 Check: 00 .. Name: ENSP00000300060/1-967 Len: 1000 Check: 1528 Weight: 1.00 Name: ENSBTAP00000022456/1-965 Len: 1000 Check: 9603 Weight: 1.00 Name: ENSTTRP00000014736/1-964 Len: 1000 Check: 4958 Weight: 1.00 Name: bmy_19898T0/1-614 Len: 1000 Check: 5118 Weight: 1.00 Name: BACU016082/1-993 Len: 1000 Check: 9766 Weight: 1.00 // 1 50 ENSP00000300060/1-967 MAKGFYISKS LGILGILLGV AAVCTIIALS VVYSQEKNKN AN-SSPVAST ENSBTAP00000022456/1-965 MAKGFYISKA LGILAILLGV AAVATIIALS VVYAQEKNKN AE-RGTAAPT ENSTTRP00000014736/1-964 MAKGFYISKA LGILGILLGV AAIATIIALS VLYDQEKNQN AGYATTVAPT bmy_19898T0/1-614 MAKGFYISKA LGILVILLGM AAIATIIALS VV-------- ---------- BACU016082/1-993 MAKGFYISKA LGILGILLGM AAIATIIALS VVYAQEKNKN A----AVDPT 51 100 ENSP00000300060/1-967 TPSASATTNP ASATTLDQSK AWNRYRLPNT LKPDSYRVTL RPYLTPNDRG ENSBTAP00000022456/1-965 SPTGPTTT-- -SATTLDQSK PWNRYRLPTT LLPDSYRVTL RPYLTPNNNG ENSTTRP00000014736/1-964 TPTTIT---- -TATTLDQSK PWNRYRLPTT LLPDSYKVKL RPYLTPNENG bmy_19898T0/1-614 ---------- ---------- ---------- ---------- ---------- BACU016082/1-993 SPATTTIT-- -AATTLDQSK PWNRYRLPTT LLPDSYKVTL RPYLTPDENG 101 150 ENSP00000300060/1-967 LYVFKGSSTV RFTCKEATDV IIIHSKKLNY TLSQGHRVVL RGVGGSQPPD ENSBTAP00000022456/1-965 LYIFTGSSTV RFTCKEPTDV IIIHSKKLNY TQHSGHLAVL RGVGDTQAPE ENSTTRP00000014736/1-964 LYIFTGTSIV RFICKAPTDV IIIHSKKLNY TTTQGHMVAL RGVGGFSAPD bmy_19898T0/1-614 ---------- ---------- ---------- ---------- ---------- BACU016082/1-993 LYIFKGTSIV RFICKDPTDV IIIHSKKLNY TTTQGHMVAL RGVGAFSVPN 151 200 ENSP00000300060/1-967 IDKTELVEPT EYLVVHLKGS LVKDSQYEMD SEFEGELADD LAGFYRSEYM ENSBTAP00000022456/1-965 IDRTELVLLT EYLVVHLKSS LEAGKTYEME TTFQGELADD LAGFYRSEYM ENSTTRP00000014736/1-964 IARTELVEPT EYLVVHLKGS LEAGRMYEME SAFQGELADD LAGFYRSEYM bmy_19898T0/1-614 ---------- ---------- ---------- ---------- ---------- BACU016082/1-993 IDRTELVEPT EYLVVHLKGL LEAGRMYEME SKFQGELADD LAGFYRSEYM 201 250 ENSP00000300060/1-967 EGNVRKVVAT TQMQAADARK SFPCFDEPAM KAEFNITLIH PKDLTALSNM ENSBTAP00000022456/1-965 DGNVKKVLAT TQMQSTDARK SFPCFDEPAM KATFNITLIH PKDLTALSNM ENSTTRP00000014736/1-964 EGNVKKVLAT TQMQSTDARK SFPCFDEPAM KATFNITLIY PNGFTALSNM bmy_19898T0/1-614 ------VLAT TQMQSADARK SFPCFDEPAM KATFNITLIY PKELTALSNM BACU016082/1-993 EGNVKKVLAT TQMQSADARK SFPCFDEPAM KATFNITLIY PKELTALSNM 251 300 ENSP00000300060/1-967 LPKGPSTPLP EDPNWNVTEF HTTPKMSTYL LAFIVSEFDY VEKQASNGVL ENSBTAP00000022456/1-965 PPKGPSVPFD GDSNWSVTEF ETTPVMSTYL LAYIVSEFTS VESVAPNDVQ ENSTTRP00000014736/1-964 PPKGPSVPFA EDPKWNVIEF ETTPVMSTYL LAYIVCEFTS VKTMAPNNVQ bmy_19898T0/1-614 PPKGPSVPLA EDPNWNVTEF QTTPVMSTYL LAYIVSEFTS VETRAPNNVQ BACU016082/1-993 PPKGPSVPLA EDPKWKVTEF QTTPVMSTYL LAYIVSEFTS VETSAPNSVQ 301 350 ENSP00000300060/1-967 IRIWARPSAI AAGHGDYALN VTGPILNFFA GHYDTPYPLP KSDQIGLPDF ENSBTAP00000022456/1-965 IRIWARPKAT ADNHGLYALN VTGPILNFFA NHYNTAYPLP KSDQIALPDF ENSTTRP00000014736/1-964 VGIWARPNAI AENHGNYALN VTGPILNFFA KHFDTPYPLP KSDQVALPDF bmy_19898T0/1-614 VRIWARPNAT AQNHGIYALN VTGPILNFFA BHFDTPYPLP KSDQIALPDF BACU016082/1-993 VRIWARPNAT AQNHGIYALN VTGPILNFFA HHFDTPYPLP KSDQIALPDF 351 400 ENSP00000300060/1-967 NAGAMENWGL VTYRENSLLF DPLSSSSSNK ERVVTVIAHE LAHQWFGNLV ENSBTAP00000022456/1-965 NAGAMENWGL VTYRENALLY DPQSSSSSNK ERVVTVIAHE LAHQWFGNLV ENSTTRP00000014736/1-964 NAGAMENWGL VTYRENSLLF DPQASSSSNK ERVVTVIAHE LAHQWFGNLV bmy_19898T0/1-614 NAGAMENWGL VTYRENSLLF DPQASSSSNK ERVVTVIAHE LAHQ------ BACU016082/1-993 NAGAMENWGL VTYRENSLLF DPQASSSSNK ERVVTVIAHE LAHQWFGNLV 401 450 ENSP00000300060/1-967 TIEWWNDLWL NEGFASYVEY LGADYAEPTW NLKDLMVLND VYRVMAVDAL ENSBTAP00000022456/1-965 TLAWWNDLWL NEGFASYVEY LGADYAEPTW NLKDLMVPND VYRVMAVDAL ENSTTRP00000014736/1-964 TLAWWNDLWL NEGFASYVEY LGADHAEPTW NLKDLMVPNE LYHVMAVDAL bmy_19898T0/1-614 ---------- ---------- ---------- --KDLMVPND LYRVMAVDAL BACU016082/1-993 TLAWWNDLWL NEGFASYVEY LGADYAEPTW NLKDLMVPND LYHVMAVDAL 451 500 ENSP00000300060/1-967 ASSHPLSTPA SEINTPAQIS ELFDAISYSK ---------- --------GA ENSBTAP00000022456/1-965 VTSHPLTTPA NEVNTPAQIS EMFDTISYSK ---------- --------GA ENSTTRP00000014736/1-964 ASSHPLTTPA EEVNTPAQIS EMFDSISYSK ---------- --------GA bmy_19898T0/1-614 ASSHPLTTPA EEVNTPAQIS EMFDSISYSK ---------- --------GA BACU016082/1-993 ASSHPLTTPA EEVNTPAQIS EMFDSISYSK VLPSPRAGPE TVGVMGREGA 501 550 ENSP00000300060/1-967 SVLRMLSSFL SEDVFKQGLA SYLHTFAYQN TIYLNLWDHL QEAVNNRS-I ENSBTAP00000022456/1-965 SVIRMLSNFL TEDLFKKGLA SYLQTFAYQN TTYLNLWEHL QMAVENQLSI ENSTTRP00000014736/1-964 SVIRMLSEFL TEDLFRKGLA SYLHAFAYQN TTYLDLWEHL QKAVNNQSAI bmy_19898T0/1-614 SVIRMLSEFL TEDLFRKGLA SYLHAFAYQN TTYLDLWEHL QMAVNNXSTI BACU016082/1-993 SVIRMLSEFL TEDLFRKGLA SYLHAFAYQN TTYLDLWEHL QMAVNNQSAI 551 600 ENSP00000300060/1-967 QLPTTVRDIM NRWTLQMGFP VITVDTSTGT LSQEHFLLDP DSNVTRPSEF ENSBTAP00000022456/1-965 RLPDTVSAIM DRWTLQMGFP VITVDTNTGT ISQKHFLLDP NSTVTRPSQF ENSTTRP00000014736/1-964 KLPDTVRAIM DRWTQQMGFP VITVDTKTGS ISQKHFLLDP ESNVTRPSVF bmy_19898T0/1-614 XLPGTVRDIM DRWTLQMGFP VITVNTKTGH ISQKHFLLDP ESNVTRPSAF BACU016082/1-993 KLPGTVRDIM DRWTLQMGFP VITVDTKTGS ISQKHFLLDP ESTVTRPSAF 601 650 ENSP00000300060/1-967 NYVWIVPITS IRDGRQQQDY WLI-DVRAQN DLFSTSGNEW VLLNLNVTGY ENSBTAP00000022456/1-965 NYLWIVPISS IRNGQPQEHY WLRGEERNQN ELFKAAADDW VLLNINVTGY ENSTTRP00000014736/1-964 KYLWIVPISS IKNGNLQDHY WLPGKATAQY DLFKTGAEEW VLLNVNVTGY bmy_19898T0/1-614 ---------- ---------- ---------- ---------- ---------- BACU016082/1-993 NYLWIVPISS IRSGKLQDHY WLQGNAATQN DLFKTQADEW VLLNVNVTGY 651 700 ENSP00000300060/1-967 YRVNYDEENW RKIQTQLQRD HSAIPVINRA QIINDAFNLA SAHKVPVTLA ENSBTAP00000022456/1-965 YQVNYDENNW KKIQNQLMSR RENIPVINRA QVIYDSFNLA SAHMVPVTLA ENSTTRP00000014736/1-964 YQVNYDENNW RKIQNQLQKD -ATIPVINRA QVIYDSFNLA SARIVPVTLA bmy_19898T0/1-614 ---------- ---------- ---------- ---------- ---------- BACU016082/1-993 YQVNYDENNW RKIQNQLQIK PLTIPVINRA QVIYDSFNLA SAHIVPVTLA 701 750 ENSP00000300060/1-967 LNNTLFLIEE RQYMPWEAAL SSLSYFKLMF DRSEVYGPMK NYLKKQVTPL ENSBTAP00000022456/1-965 LNNTLFLKNE MEYMPWQAAV SSLNYFKLMF DRTEVYGPMQ NYLKNQVEPI ENSTTRP00000014736/1-964 LNNTLFLKNE IEYMPWQAAL SSLRYFKLMF DRSEVYGPMK NYLRNQVEPL bmy_19898T0/1-614 ---------- ---------- ---------- ---------- ---KNQVEPL BACU016082/1-993 LNNTLFLINE KEYMPWQAAL SSLRYFKLMF DRSEVYGPMK NYLRNQVEPL 751 800 ENSP00000300060/1-967 FIHFRNNTNN WREIPENLMD QYSEVNAIST ACSNGVPECE EMVSGLFKQW ENSBTAP00000022456/1-965 FLYFENLTKN WTEIPENLMD QYSEINAIST ACSNGLPKCE ELAKTLFNQW ENSTTRP00000014736/1-964 FLYFENLTQN WTKRPESLMD QYNEINAIST ACSNGLPKCE ELAKNLYNRW bmy_19898T0/1-614 FLYFENLTKN WTMRPETLMD QYNEINAIST ACSNGLPKCE ELAKNLYNQW BACU016082/1-993 FLYFENRTKN WTVRPESLMD QYNEINAIST ACSNGLPKCE ELAKNLYNQW 801 850 ENSP00000300060/1-967 MENPNNNPIH PNLRSTVYCN AIAQGGEEEW DFAWEQFRNA TLVNEADKLR ENSBTAP00000022456/1-965 MNNPNVNPID PNLRSTIYCN AIAQGGQEEW DFAWNQLQQA ELVNEADKLR ENSTTRP00000014736/1-964 MEDPQNNPIH PNLRSTIYCN AIAQGDEKEW DFAWRQLRQA RLVNEADKLR bmy_19898T0/1-614 MENPQNNPIH PNLRSTIYCN AIAQGDQKEW DFAWRQLQQV QLVNEADKLR BACU016082/1-993 MENPQNNPIH PNLRSTIYCN AIAQGDQKEW DFAWRQLQQV QLVNEADKLR 851 900 ENSP00000300060/1-967 AALACSKELW ILNRYLSYTL NPDLIRKQDA TSTIISITNN VIGQGLVWDF ENSBTAP00000022456/1-965 SALACTNHVW LLNRYLSYTL NPDLIRKQDA TSTITSIASN VIGQSLAWDF ENSTTRP00000014736/1-964 SALACTNQVW LLNRYLSYTL NPDLIRKKDA TSTINSIASN XXXXXXXXXX bmy_19898T0/1-614 SALACTNKVW LLNRYLSYTL KPDLIRKQDA TSTINSIASN VLGQSLAWDF BACU016082/1-993 SALACTNEVW LLNRYLSYTL KPDLIRKQDA TSTINSIASN VLGQSLAWDF 901 950 ENSP00000300060/1-967 VQSNWKKLFN DYGGGSFSFS NLIQAVTRRF STEYELQQLE QFKKDNEETG ENSBTAP00000022456/1-965 IRSNWKKLFE DYGGGSFSFS NLIQGVTRRF STEFELQQLE EFKENNMDVG ENSTTRP00000014736/1-964 XXXXXXXXXX XYGGGSFSFS NLIQAVTRRF STEFELQELE QFKKNNMDVG bmy_19898T0/1-614 VQSNWKKLFQ DYGGGSFSFS NLIQA----- --------LE QFKKDNMDVG BACU016082/1-993 VQSNWKKLFQ DYGGGSFSFS NLIQAVTRRF STEFELQQLE QFKKNNMDVG 951 1000 ENSP00000300060/1-967 FGSGTRALEQ ALEKTKANIK WVKENKEVVL QWFTENSK-- ---------- ENSBTAP00000022456/1-965 FGSGTRALEQ ALEKTKANIN WVKENKEVVL NWFKDHS--- ---------- ENSTTRP00000014736/1-964 FGSGTRALEQ ALEKTKANIK WVKENKEVVL KWFTEHSQ-- ---------- bmy_19898T0/1-614 FGSGTRALEQ ALEKTKANIK WVKENKEVVL NWFTEHSQIV PGPYSHLAPM BACU016082/1-993 FGSGTRALEQ ALEKTKANIK WVKENKEVVL NWFTKHSQIV PGPYSHLAPM