KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:34 2014 Check: 00 .. Name: ENSP00000367911/1-242 Len: 315 Check: 4148 Weight: 1.00 Name: ENSBTAP00000022507/1-252 Len: 315 Check: 3149 Weight: 1.00 Name: bmy_09042T0/1-204 Len: 315 Check: 6350 Weight: 1.00 Name: BACU020102/1-254 Len: 315 Check: 5149 Weight: 1.00 Name: ENSTTRP00000012917/1-250 Len: 315 Check: 7622 Weight: 1.00 // 1 50 ENSP00000367911/1-242 ---------- ---------- ---------- --------MA GKLKPLNVEA ENSBTAP00000022507/1-252 ---------- ---------- ---------- --------MA GKLEPREVES bmy_09042T0/1-204 RRTRRVRAAQ PIRPRVIFFF LNQSSSKAQS RQPCVRWKMA GKLEPSEV-A BACU020102/1-254 ---------- ---------- ---------- ---------- --LSPLSLSL ENSTTRP00000012917/1-250 ---------- ---------- ---------- --------SS SLLSPLSLSL 51 100 ENSP00000367911/1-242 PEA-TEEAEG -QAKSL-KTE DLLAMVIKLQ K-EGSLEPQI EDLISRINDL ENSBTAP00000022507/1-252 PKVVMEDGEG SQTESSEKTE DLLEMVKKLQ KAEGSLEPQI EDLINRIHEL bmy_09042T0/1-204 PLEVLDEAEG -QTKSSKKTE ELLEMVKKLQ K-EGSLEPQV EDLINRINEL BACU020102/1-254 DAVILIFIST GETKSSKKTE ELLEMVKKLQ K-EGSLEPQV EDLINRINEL ENSTTRP00000012917/1-250 DAAILIFIST GQTKSSKKTE ELLEMVKKLQ K-EGSLEPQV ED-INRINEL 101 150 ENSP00000367911/1-242 QQ-------- ------AKKK SSEELRETHS LWEALHRELD SLNGEKVHLE ENSBTAP00000022507/1-252 QQ-------- ------AKEK SSEELGEAQA LWEALRRDLD SLNGEKVHLE bmy_09042T0/1-204 QQ-------- ------AKKK SGEELGEAQA LWEAL----- -LNGEKVHLE BACU020102/1-254 QQEAALTPCL LPFFDPAKKK SGEELGEAQA LWEALRRDLD SLNGEKVHLE ENSTTRP00000012917/1-250 QQ-------- ----DPAKKK SSEELGEAQA LWEALRRDLD SLNGEKVHLE 151 200 ENSP00000367911/1-242 EVLGKKQ--- ---EALRILQ MHCQEKESEA Q-----RLDV RGQLEDLMGQ ENSBTAP00000022507/1-252 EVLSRKQ--- ---EALRTLQ LYCQRKAEEV Q-----RLPM EEQLEDLIGP bmy_09042T0/1-204 EVLSKKQ--- ---------- ---------- ---------- ---------- BACU020102/1-254 EVLSKKQGIY QLLQALRTLQ LHCQRKGSEA Q-----RLHV EEQLEDLTGQ ENSTTRP00000012917/1-250 EVLSKKQGIY QL-----TLQ LHCQRKESEA HRMSAPRLHV EERLEDLTGQ 201 250 ENSP00000367911/1-242 HKDLWEFHML EQRLAREIRA LERSKEQLLS ERRLVRAKLR EVERRLHSPP ENSBTAP00000022507/1-252 HKDLWEFQML KRRLAWEIRA LQSSQEQLLT EERQALARLE DVERQLLAPP bmy_09042T0/1-204 ---------- ---------- ---------- -ERQARAKLE TVERRLRSPP BACU020102/1-254 HKDPWEFHML KQRLAREIRA LQSSKEQLLT EERQARAKLE TVERRLCSPP ENSTTRP00000012917/1-250 HKDPWEFHML KQRLAWEIRA LQSSKEQLLT -ERQARAKLX XXXXXXXXXX 251 300 ENSP00000367911/1-242 EVEGAMAVND GLKAELEIFG EQV----RSA PEVGAGEGEA GP--ELPRAR ENSBTAP00000022507/1-252 EARAARAAIC RLKAEPEKLR GEAPAQTQST PEDRDGSGEA GPPAPLPSRP bmy_09042T0/1-204 EVQSAPAEKD GLKAELEKLG GQVPAQTQTT PEDR--AGEV -P--FVEYYD BACU020102/1-254 EVQSAPAGKD GLKAELEKLG GQVPAQNQTT PEDR--AGEA GP--QLPSEG ENSTTRP00000012917/1-250 XXXXXXXXXD GLKAELEKLG GQVPAQTQTT PEDQ--AGED GP--QLPSEG 301 350 ENSP00000367911/1-242 DEEDPEPPVA APDAL ENSBTAP00000022507/1-252 DSRPPHPSRP APSSP bmy_09042T0/1-204 GSGSPT---- ----- BACU020102/1-254 DLAPPA---- ----- ENSTTRP00000012917/1-250 DLAPPA---A GPDAP