KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:35 2014 Check: 00 .. Name: ENSBTAP00000022518/1-911 Len: 916 Check: 4796 Weight: 1.00 Name: ENSP00000323246/1-911 Len: 916 Check: 3163 Weight: 1.00 Name: ENSTTRP00000000102/1-904 Len: 916 Check: 5858 Weight: 1.00 Name: bmy_08809T0/1-907 Len: 916 Check: 7489 Weight: 1.00 Name: BACU016401/1-872 Len: 916 Check: 7302 Weight: 1.00 // 1 50 ENSBTAP00000022518/1-911 MEVNCLTLKD LIS-RPPRLD FAIEDGENAQ KENIFVDLSR MAPKTPIKNE ENSP00000323246/1-911 MEVNCLTLKD LISPRQPRLD FAVEDGENAQ KENIFVDRSR MAPKTPIKNE ENSTTRP00000000102/1-904 MEVNCLTLKD LIN---PRLD FAIEDGENAQ KENIFVDRSR MAPKTPIKNE bmy_08809T0/1-907 MEVNCLTLKD LIN---PRLD FAIEDGENAQ KENIFVDRSR MAPKTPIKNE BACU016401/1-872 ---------- ---------- ---------- ---------- MAPKTPIKNE 51 100 ENSBTAP00000022518/1-911 PIDLSKQKIF TPERNPITPV KLVDRQQVEP WTPTANLKIL ISAASPDIRD ENSP00000323246/1-911 PIDLSKQKKF TPERNPITPV KFVDRQQAEP WTPTANLKML ISAASPDIRD ENSTTRP00000000102/1-904 PIDLSKQKIF TPERNPITPV KLVDRQQAEP WTPTANLKML ISAASPDIRD bmy_08809T0/1-907 PIDLSRQKIF TPERNPITPV KLVDRQQAEP WTPTANLKML ISAASPDIRD BACU016401/1-872 PIDLSRQKIF TPERNPITPV KLVDRQQAEP WTPTANLKML ISAASPDIRD 101 150 ENSBTAP00000022518/1-911 REKKKELFRP IENKDDVFTD SLQLDAVDDS AVDEFEKQRP SRKQKSLGLL ENSP00000323246/1-911 REKKKGLFRP IENKDDAFTD SLQLDVVGDS AVDEFEKQRP SRKQKSLGLL ENSTTRP00000000102/1-904 REKKKGLFRP IENKDDAFTD CL-LDVVGDS AVDEFEKQRP SRKQKSLGLL bmy_08809T0/1-907 REKKKGLFRP IENKDDAFTD CLQLDVVGDS AVDEFEKQRP SRKQKSLGLL BACU016401/1-872 REKKKGLFRP IENKDDAFTD CLQLDVVGDS AVDEFEKQRP SRKQKSLGLL 151 200 ENSBTAP00000022518/1-911 CQKFLARYPS YPLSTEKTTI SLDEVAVSLG VERRRIYDIV NVLESLHLVS ENSP00000323246/1-911 CQKFLARYPS YPLSTEKTTI SLDEVAVSLG VERRRIYDIV NVLESLHLVS ENSTTRP00000000102/1-904 CQKFLARYPS YPLSTEKTTI SLDEVAVSLG VERRRIYDIV NVLESLHLVS bmy_08809T0/1-907 CQKFLARYPS YPLSTEKTTI SLDEVAVSLG VERRRIYDIV NVLESLHLVS BACU016401/1-872 CQKFLARYPS YPLSTEKTTI SLDEVAVSLG VERRRIYDIV NVLESLHLVS 201 250 ENSBTAP00000022518/1-911 RVAKNQYSWH GRHSLPKTLR NLQRLGEKQK YEEQMAHLQQ KELNPIDHKS ENSP00000323246/1-911 RVAKNQYGWH GRHSLPKTLR NLQRLGEEQK YEEQMAYLQQ KELDLIDYKF ENSTTRP00000000102/1-904 RVAKNQYGWH GRHSLPKTLR NLQRLGEEQK YEEQMAHLQQ KELDLMDYKF bmy_08809T0/1-907 RVAKNQYGWH GRHSLPKTLR NLQRLGEEQK YEEQMAHLQQ KELDLMDYKF BACU016401/1-872 RVAKNQYGWH GRHSLPKTLR NLQRLGEEQK YEEQIAHLQQ KELDLMDYKF 251 300 ENSBTAP00000022518/1-911 GERRRDGCPD SQDPQLLDFP EPDCPSSSAN SRKDKSLKIM SQKFVMLFLV ENSP00000323246/1-911 GERKKDGDPD SQEQQLLDFS EPDCPSSSAN SRKDKSLRIM SQKFVMLFLV ENSTTRP00000000102/1-904 GERKRDGCPD SQDPQLLDFS EPDYPSSSAN SRKDKSLRIM SQKFVMLFLV bmy_08809T0/1-907 GERKRDGCPD SQDPQLLDFS EPDYPSSSAN SRKDKSLRIM SQKFVMLFLV BACU016401/1-872 GERRRDGCPE SQDPQLLDFS EPDYPSSSAN SRKDKSLRIM SQKFVMLFLV 301 350 ENSBTAP00000022518/1-911 SKTKIVTLDV AAKILIEESQ DIPDHSKFKT KVRRLYDIAN VLTSLMLIKK ENSP00000323246/1-911 SKTKIVTLDV AAKILIEESQ DAPDHSKFKT KVRRLYDIAN VLTSLALIKK ENSTTRP00000000102/1-904 SKTKIVTLDV AAKILIEESQ DTPDHSKFKT KVRRLYDIAN VLTSLALIKK bmy_08809T0/1-907 SKTKIVTLDV AAKILIEESQ DXPDHSKFKT KVRRLYDIAN VLTSLALIKK BACU016401/1-872 SKTKIVTLDV AAKILIEESQ DTPDHSKFKT KVRRLYDIAN VLTSLALIKK 351 400 ENSBTAP00000022518/1-911 VHVTEDRGRK PAFKWIGPVD FSSTDDDLVD VSTPVLPELK KEIYGHVQFC ENSP00000323246/1-911 VHVTEERGRK PAFKWIGPVD FSSSDEELVD VSASVLPELK RETYGQIQVC ENSTTRP00000000102/1-904 VHVTEERGRK PAFKWIGPVD FSSTDEELVD VSASVLPELK RETYGHIQLC bmy_08809T0/1-907 VHVTEERGRK PAFKWIGPVD FSSTDEELVD VSASVLPELK RETYGHIQFC BACU016401/1-872 VHVTEERGRK PAFKWIGPVD FSSTDEELVD VSASVLPELK RETYGHIQFC 401 450 ENSBTAP00000022518/1-911 AKQKLARHSS FNSEQASERT QRKVNSEPSS PYRQKQGLGV YSLEIGSLAA ENSP00000323246/1-911 AKQKLARHGS FNTVQASERI QRKVNSEPSS PYREEQGSGG YSLEIGSLAA ENSTTRP00000000102/1-904 AKQKLARHGS FNSDQASERI QRKVNSEPSS PYREKQGSGG YSLEIGSLAA bmy_08809T0/1-907 AKQKLARHGS FNSDQASERI QREVNSEPSS PYREKQGSSG YSLEIGSLAA BACU016401/1-872 AKQKLARHGS FNSDQASERI QRKVNSEPSS PYREKQGSSG YSLEIGSLAA 451 500 ENSBTAP00000022518/1-911 VSRQKMEDNS ETVAFASQNM MPLPSSLDPA APLPSPSVDS EYRVSPLCHQ ENSP00000323246/1-911 VYRQKIEDNS QGKAFASKRV VPPSSSLDPV APFPVLSVDP EYCVNPLAHP ENSTTRP00000000102/1-904 VYRQKIEDNS QAETFANQRA IPPSSSLEAA APFPGLSVDS EYCVNALAHP bmy_08809T0/1-907 VYRQKIEDNS QAEAFANQRA IPPSSSLEAA APFPGLSVDS EYCVNALAHP BACU016401/1-872 VYRQKIEDNS QAEAFANQRA IPPSSSLEAA APFPGLSVDS EYCVNALAHP 501 550 ENSBTAP00000022518/1-911 ALSAAQTDLK ALPAQNGLNG QGGVSLASMA LDVEHQPQPL AAAQPLLYVP ENSP00000323246/1-911 VFSVAQTDLQ AFSMQNGLNG QVDVSLASAA SAVESLKPAL LAGQPLVYVP ENSTTRP00000000102/1-904 VLSVAPTDLQ AFSAQNGLNG QGGVSLASAA LDAESLKPAL LAGQPLMYVP bmy_08809T0/1-907 VLSVAPTDLQ AFSAQNGLNG QGGVSLASAA LDAESLKPAL LAGQPLVYVP BACU016401/1-872 VLSVAPTDLQ AFSAQNGLNG QGSVSLASAA LDAESLKPAL LAGQPLVYVP 551 600 ENSBTAP00000022518/1-911 PAPLFMLCGG LQEGLSP--G SGSGSGSVGG GSEV-TAAEQ PPMPSGQKRL ENSP00000323246/1-911 SASLFMLYGS LQEGPAS--- -GSGSERDDR SSEAPATVEL SSAPSAQKRL ENSTTRP00000000102/1-904 STSLFMLCGS LQEPPSP--- -GSGSERDSR GSE--GTAER SATPSVQKRL bmy_08809T0/1-907 STSLFMLCGS LQEPPSP--G SGSGSDRDSR GSE--GTSER SATPSVQKRL BACU016401/1-872 STSLFMLCGS LQEPPSPGSG SGSGSERDSR GSE--GTAER SATPSVQKRL 601 650 ENSBTAP00000022518/1-911 SKERRLQEEE EEPATKRQCR DHEDGPLSLV MPKKPSDSAD IASPKTSENR ENSP00000323246/1-911 CEERKPQ-EE DEPATKRQSR EYEDGPLSLV MPKKPSDSTD LASPKTMGNR ENSTTRP00000000102/1-904 GEERKPQ-EE EEPATKRQSR DYEDGPLSLV MPKKPSDSTD IASSKTVDKR bmy_08809T0/1-907 GEERKPQ-EE EEPATKRQSR DCEDGPLSLV MPKKPSDSTD IASSKTVDKR BACU016401/1-872 GEERKPQ-EE EEPATKRQSR DCENGPLSLV MPKKPSDSTD IASSKTVDKR 651 700 ENSBTAP00000022518/1-911 ASAPHEDTHM NGQLSAAKAV SGKATTNGFV SSEWGNPCSN TEIEKPSEEN ENSP00000323246/1-911 ASIPLKDIHV NGQLPAAEEI SGKATANSLV SSEWGNPSRN TDVEKPSKEN ENSTTRP00000000102/1-904 GPAPHEDIHM NGQLSAAKEV SGKATADCFI SSEWGNPSRN TEIEKPSKEN bmy_08809T0/1-907 GPAPHEDIHM NGQLSAAKEV SGKATADCFI SSEWGNPSRN TEIEKPSKEN BACU016401/1-872 GPAPHEDIHM NGQLSAAKEV SGKATADCFI SSEWGNPSRN TEIEKPSKEN 701 750 ENSBTAP00000022518/1-911 ESTKGPSPLQ YLYVQPPAGL NGLSVLLPSS QSPHAVGLPV GPLPSLSIQY ENSP00000323246/1-911 ESTKEPSLLQ YLCVQSPAGL NGFNVLLSGS QTPPTVGPSS GQLPSFSVPC ENSTTRP00000000102/1-904 ESTKEPSLLQ YLYVQSPAGL NGFSVLLSGN QTPRAVGPSS GQLPPLSVPC bmy_08809T0/1-907 ESTKEPSLLQ YLYVQSPAGL NGFSVLLSGN QTPRAVGPSS GQLPPLSVPC BACU016401/1-872 ESTKEPSLLQ YLYVQSPAGL NGFSVLLSGN QTPRAVGPSS GQLPPLSVPC 751 800 ENSBTAP00000022518/1-911 MVLPSPALSG FPVLCSPTMP GPVSSAPSPL PNVGPVNFGL PGLGSTAHLL ENSP00000323246/1-911 MVLPSPPLGP FPVLYSPAMP GPVSSTLGAL PNTGPVNFSL PGLGSIAQLL ENSTTRP00000000102/1-904 MVLPSPTLGP FPVLYSPTMP GPVSSASSAL PSTGPVNLGL PGLGSTAHLL bmy_08809T0/1-907 MVLPSPTLGP FPVLYSPTMP GPVSSAPRAL PSTGPVNLGL PGLGSRAHLL BACU016401/1-872 MVLPSPTLGP FPVLYSPTMP GPVSSAPNAL PSTGPVNLGL PGLGSRAHLL 801 850 ENSBTAP00000022518/1-911 IGPAAMVNPK SSTLPSTDPQ LQGPCSLHLS PVMSRSHGSV -QPGSPAYGS ENSP00000323246/1-911 VGPTAVVNPK SSTLPSADPQ LQSQPSLNLS PVMSRSHSVV QQPESPVYVG ENSTTRP00000000102/1-904 IGPAALVNPK SSTLPSTDAQ LQGPHSLNLS PVMSRSHSII -QPESPVYGG bmy_08809T0/1-907 IGPAALVNPK SSTLPSADAQ LQGPHSLNLS PVMSRSHSII -QPESPVYGG BACU016401/1-872 IGPAALVNPK SSTLPSADAQ LQGPHSLNLS PVMSRSHSII -QPESPVYGG 851 900 ENSBTAP00000022518/1-911 LPAATVKLQQ SPVPVTPKSI RCTHQETFFK TPGSLGDPVL RRKERNQSRS ENSP00000323246/1-911 HPVSVVKLHQ SPVPVTPKSI QRTHRETFFK TPGSLGDPVL KRRERNQSRN ENSTTRP00000000102/1-904 HPASVVKLQQ SPVPVTPKSI RRTHRETFFK TPGSLGDPVL RRRERNQSRN bmy_08809T0/1-907 HPASVVKLQQ SPVPVTPKSI RRTHRETFFK TPGSLGDPVL RRRERNQSRN BACU016401/1-872 HPASVVKLQQ SPVPVTPKSI RRTHRETFFK TPGSLGDPVL RRRERNQSRN 901 950 ENSBTAP00000022518/1-911 SSSAQRRLEI SSGGTD ENSP00000323246/1-911 TSSAQRRLEI PSGGAD ENSTTRP00000000102/1-904 TSSAQRRLEI PSGGAD bmy_08809T0/1-907 TSSAQRRLEI PSGGAD BACU016401/1-872 TSSAQRRLEI PSGGAD