KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:36 2014 Check: 00 .. Name: ENSP00000377655/1-1050 Len: 1070 Check: 2815 Weight: 1.00 Name: ENSTTRP00000014213/1-1041 Len: 1070 Check: 6037 Weight: 1.00 Name: ENSBTAP00000022522/1-1047 Len: 1070 Check: 7574 Weight: 1.00 Name: bmy_21338T0/1-658 Len: 1070 Check: 6874 Weight: 1.00 Name: BACU000034/1-737 Len: 1070 Check: 5498 Weight: 1.00 // 1 50 ENSP00000377655/1-1050 MDKRKLGRRP SSSEIITEGK RKK-SSSDLS EIRKMLNAKP EDVHVQSPLS ENSTTRP00000014213/1-1041 MDKGKAGRRR SSSEIVTEGK RKKPSSLELH KIKKMLNAKP EDVCVKSPLS ENSBTAP00000022522/1-1047 MDKGKAGRRR SSAEIVTEGK RKKPSSSELH KITKILNAKP EDVHVQSPLS bmy_21338T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU000034/1-737 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000377655/1-1050 KFRSSERWTL PLQ-WERSLR NKVISLDHKN KKHIRGCPVT SKSSPERQLK ENSTTRP00000014213/1-1041 KLRSSERWDL SLQ-WKRSLR NKVLSVDHKS KKGVRGRPVT SKTSAERQLK ENSBTAP00000022522/1-1047 KLRSSEHWDV SLQGWKRSLR NKVLSLDHKS KKGVRGHPVT SKISPERQLK bmy_21338T0/1-658 ---------- ---------- ----MLE--- -------PIE SD-------- BACU000034/1-737 ---------- ----WKRSLR NKVLSVDHKS KKGVRGRPVT SKTSPERQLK 101 150 ENSP00000377655/1-1050 VMLTNVLWTD LGRKFRKTLP RNDANLCDAN KVQSDSLPST SVDSLETCQK ENSTTRP00000014213/1-1041 VMLTNVLWTD LGRKFRKTLP KNDANLCDAN KVQSDSLPST SVDSLETCQK ENSBTAP00000022522/1-1047 VMLTNVLWTD LGRKFRKTLP RNDANLCDAN KVQSDSLPST SVDSLETCQK bmy_21338T0/1-658 -------FT- ---------- ---------- ---------- ---------- BACU000034/1-737 VVLTNVLWTD LGRKFRKTLP KSDANLYDAN KVQSDSLPST SVDSLETCQK 151 200 ENSP00000377655/1-1050 LEPLRQSLNL SERIPRVILT NVLGTELGRK YIRTPPVTEG SLSDTDNLQS ENSTTRP00000014213/1-1041 LEPLHQSLNL SERIPRVILT NVLGTELGRK YIKTSPVTEA SLGDTDNLQS ENSBTAP00000022522/1-1047 LEPLHQSLNL SERIPRVILT NVLGTKLGRK YIKTSSVTEA NLGDTDNLQS bmy_21338T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU000034/1-737 LEPLHQSLNL SERIPRVILT NVLGTELGRK YIKTSSVTEA SLGDTDNLQS 201 250 ENSP00000377655/1-1050 EQLSSSSDGS LESYQNLNPH KSCYLSERGS QRSKTVDDNS AKQTAHNKEK ENSTTRP00000014213/1-1041 EQLSSSSDGS LESCQNLNPH KSSFLSERSS QPSQT-DNNY AKQAAHTKEK ENSBTAP00000022522/1-1047 EQLSSSSDGS LESCQNLNPH KNFFLSESSS QSSKT-D-NY AKQTSYTKEK bmy_21338T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU000034/1-737 EQLSSSSDGS LESCQNLNPH KSSFLSERSS QPSQT-DNNY AKQAAHTKEK 251 300 ENSP00000377655/1-1050 RRKDDGISLL ISDTQPEDLN SGSRGCDHLE QESRNKDVKY SDSKVELTLI ENSTTRP00000014213/1-1041 RRDDDSISLV MSDTQPKDLN RGSRGCDHLE EGSRNKDNTN SDSKMESTLI ENSBTAP00000022522/1-1047 RRDDDGISF- MSDTQPKDLS SGSRDCDHLE VGSRNKDDTN SVSRMEPTLI bmy_21338T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU000034/1-737 RRDDDSISLV MSDTQPK--- ---------- ---------- ---------- 301 350 ENSP00000377655/1-1050 SRKTKRRLRN NLPDSQYCTS LDKSTEQTKK QEDDSTISTE FEKPSENYHQ ENSTTRP00000014213/1-1041 SRKRKQRLRS NLPGSLNPTS LYKSAEQTKE QENDPTVSTE LEKSSENYQE ENSBTAP00000022522/1-1047 SRKRKKRLRS NLPDTHNPAS LYKSAEQTKE QENDPAVFTE LEKSSENYHE bmy_21338T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU000034/1-737 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000377655/1-1050 DPKLPEEITT KPTKSDFTKL SSLNSQELTL SNATKSASAG STTETVENSN ENSTTRP00000014213/1-1041 DPKLLEEIML EPIESDFTKL SSLCSQELAL SAAPQITSEC STTKTFESCI ENSBTAP00000022522/1-1047 DPKLFEEVTY ESIESDFAQL PSDCGQELAL SASPQMTSGC SAMETFESSI bmy_21338T0/1-658 ---------- --------KL SSLCSQELAL SXASQITSEC STTKTFESSI BACU000034/1-737 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000377655/1-1050 SIDIVGISSL VEKDENELNT IEKPILRGHN EGNQSLISAE PIVVSSDEEG ENSTTRP00000014213/1-1041 STDTVGNCPV VEKDENELNT VEKPVLSEHS EGNQSFISAE PIVVSSDEEG ENSBTAP00000022522/1-1047 SSDTVGNSTL VVKDENELNT IEKPVLSEHS EGNLSFISAE PIVVSSDEEG bmy_21338T0/1-658 PTDTVGNCPV VEKDETELNX IEKPVLSEHS EGNQSFISAE PIVVSSDEEG BACU000034/1-737 ---------- ---------- ---------- ---------- -VVVSSDEEG 451 500 ENSP00000377655/1-1050 PVEHKSSEIL KLQSKQDRET TNENESTSES ALLELPLITC ESVQMSSELC ENSTTRP00000014213/1-1041 PVEHKSSEIL KLQPKQDHAI SNESESTSEP AMSELPLITC ESVRASSELC ENSBTAP00000022522/1-1047 PTEQKSSEIL KLQPKQDDAI SHESESTSEP VVSELPLITC ESVQTSSELC bmy_21338T0/1-658 PVEHKSSEIL KLQPKQDHAI SNESESTSEP AMSELPLITC ESVRASSELC BACU000034/1-737 PVEHKSSEIL KLQPKQDHAI SNESESTSEP AMSELPQITC ESVRASSELC 501 550 ENSP00000377655/1-1050 PYNPVMENIS SIMPSNEMDL QLDFIFTSVY IGKIKGASKG CVTITKKYIK ENSTTRP00000014213/1-1041 QYNPVMENIS CVIPSNEMDL QLDFIFTSVY IGKVKGASKG CVTFTTKYIK ENSBTAP00000022522/1-1047 SYNPVMENIS CLIPKNEMDL QLDFIFTSVY IGKIKGASKG CVTFTTKYIK bmy_21338T0/1-658 PYNPVMENIS CVIPSNEMDL QLDFIFTSVY IGKVKGAPKG CVTFTTKYIK BACU000034/1-737 PYNPVMENIS CVIPSNAMDL QLDFIFTSVY IGKVKGAPKG CVTFTTKYIK 551 600 ENSP00000377655/1-1050 IPFQVSLNEI SLLVDTTHLK RFGLWKSKDD NHSKRSHAIL FFWVSSDYLQ ENSTTRP00000014213/1-1041 IPFQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXWVSS-YLQ ENSBTAP00000022522/1-1047 IPFQVSVHEI SLLVDTTHLK RFGLWKNKDD DHSKKSHAIL FLWVSSNYLQ bmy_21338T0/1-658 IPFQVSLHEI SLLVDTTHLK RFGLWKNKDD DHSKRSHAIL FLWVSSDYLQ BACU000034/1-737 IPFQVSLHEI SLLVDTTHLK RFGLWKNKDD DHSKRSHAIL FLWVSSDYLQ 601 650 ENSP00000377655/1-1050 EIQTQLEHSV LSQQSKSSEF IFLELHNPVS QREELKLKDI MTEISIISGE ENSTTRP00000014213/1-1041 EIQTQLENSM LSQQSKSTEF IFLELHSSIS QREELKLQDI MTEISTANGE ENSBTAP00000022522/1-1047 EIQTQLENSV FSQQSKSTEF IFLELHSSIS QREELKLKDI MTEISTTNGE bmy_21338T0/1-658 EIQTQLENSI LSQQSKSTEF IFLELHSSIS QREELKLQDI MTEISTANGE BACU000034/1-737 EIQTQLENSI LSQQSKSTEF IFLELHSSIS QREELKLQDI MTEISTANGE 651 700 ENSP00000377655/1-1050 LELSYPLSWV QAFPLFQNLS SKESSFIHYY CVSTCSFPAG VAVAEEMKLK ENSTTRP00000014213/1-1041 LELSYPLSWV QALPLFQNLS SKESSFIHYY CASTCSFPV- -ATAEEMKMK ENSBTAP00000022522/1-1047 LELSYPLSWV QALPLFQNLS SKESSFIHYY CASTCSFPA- -ATTEEMKMK bmy_21338T0/1-658 LELSYPLSWV QALPLFQNLS SKESSFIHYY CASTCSFPA- -VTAEEMKMK BACU000034/1-737 LELSYPLSWV QALPLFQNLS SKESSFIHYY CASTCSFPA- -VTAEEMKMK 701 750 ENSP00000377655/1-1050 SVSQPSNTDA AKPTYTFLQK QSSGCYSLSI TSNPDEEWRE VRHTGLVQKL ENSTTRP00000014213/1-1041 SISQPSNTDT AKPTYTLLQK QSSGCYSLSI TSNPDEEWRE VRPTGPVQK- ENSBTAP00000022522/1-1047 SVSQPSNTDT AKPTYTLLQK QSSGCYSLSI TSNPDEEWRE VRHTGPVQKL bmy_21338T0/1-658 SISQPSNTDT AKPTYTLLQK QSSGCYSLSI TSNPDEEWRE VRHTGPVQKL BACU000034/1-737 SISQPSNTDT AKPTYTLLQK QSSGCYSLSI TSNPDEEWRE VRHTGPVQKL 751 800 ENSP00000377655/1-1050 IVYPPPPTKG GLGVTNEDLE CLEEGEFLND VIIDFYLKYL ILEKASDELV ENSTTRP00000014213/1-1041 -VY---PTKG GLGVTNEDLE CLEEGEFLND VIIDFYLKYL ILEKVSDELV ENSBTAP00000022522/1-1047 IVYPPPPTKG GLGVTNEDLE CLEEGEFLND VIIDFYLKYL ILEKASDELV bmy_21338T0/1-658 IVYPPPPTKG GLGVTNEDLE CLEEGEFLND VIIDFYLKYL ILEKVSDELG BACU000034/1-737 IVYPPPPTKG GLGVTNEDLE CLEEGEFLND VIIDFYLKYL ILEKVSDELV 801 850 ENSP00000377655/1-1050 ERSHIFSSFF YKCLTRKENN LTEDNPNLSM AQRRHKRVRT WTRHINIFNK ENSTTRP00000014213/1-1041 ERSHIFSSFF YKCLTRKENN LTEDNPNLSM AQRRHKRVRT WTRHINIFNK ENSBTAP00000022522/1-1047 ERSHIFSSFF YKCLTRKENN LTEDNPNLSM AQRRHKRVRT WTRHINIFNK bmy_21338T0/1-658 ERSHIFSSFF YKCLTRKENN LTEDNPNLSM AQRRHKRVRT WTRHINIFNK BACU000034/1-737 ERSHIFSSFF YKCLTRKENN LTEDNPNLSM AQRRHKRVRT WTRHINIFNK 851 900 ENSP00000377655/1-1050 DYIFVPVNES SHWYLAVICF PWLEEAVYED FPQTVSQQSQ AQQSQNDNKT ENSTTRP00000014213/1-1041 DYIFVPVNES SHWYLAVICF PWLEEAVYED FPQTISQHSQ AQQSQHDNKT ENSBTAP00000022522/1-1047 DYIFVPVNES SHWYLAVICF PWLEEVVYED FPQTIPQYSQ AEESHHDSRT bmy_21338T0/1-658 DYIFVPVNES SHWYLAVICF PWLEEAVYED FPQTISQHSQ AQQSQHDNKT BACU000034/1-737 DYIFVPVNES P-------CI LIL------- ---------- ---------- 901 950 ENSP00000377655/1-1050 I--------- ------DNDL RTTSTLSLSA EDSQSTESNM SVPKKMCKRP ENSTTRP00000014213/1-1041 I--------- ------DNDL HTSSA-SLGT EDSQSPEMNM SVPKKMCKRP ENSBTAP00000022522/1-1047 I--------- ------DNDL HTSSALSSGT EDSQSPEMNV TVPKKMCKRP bmy_21338T0/1-658 IGDKLNVDGV FNNVGNNNDL HTSSALSLGT EDSQSPEMNV SVPKKM---- BACU000034/1-737 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000377655/1-1050 CILILDSLKA ASVQNTVQNL REYLEVEWEV KLKTHRQFSK TNMVDLCPKV ENSTTRP00000014213/1-1041 CILILDSLKA ASVQNTVQNL REYLEVEWEV KRKTHREFSK TNMVDLCPKV ENSBTAP00000022522/1-1047 CILILDSLKA ASIQNTVQNL REYLEVEWEV KRKTHREFSK TNMVDLCPKV bmy_21338T0/1-658 ---------- ---------- ---------- ---------- ------CKRY BACU000034/1-737 -----DSLKA ASIQNTVQNL REYLEVEWEV KRKTHREFSK TNMVDLCPKV 1001 1050 ENSP00000377655/1-1050 PKQDNS---S DCGVYLLQYV ESFFKDPIVN FELPIHLEKW FPRHVIKTKR ENSTTRP00000014213/1-1041 PKQDNS---S DCGVYLLQYV ESFFKDPIVN FELPIHLEKW FPRHVIKTKR ENSBTAP00000022522/1-1047 PKQDNS---S DCGVYLLQYV ESFFKDPIVN FELPIHLEKW FPRHVIKTKR bmy_21338T0/1-658 AMHSHTRLLE SC--FYTKHS SEFTRDPIVN FELPIHLEKW FPRHVIKTKR BACU000034/1-737 PKQDNS---S DCGVYLLQYV ESFFKDPIVN FELPIHLEKW FPRHVIKTKR 1051 1100 ENSP00000377655/1-1050 EDIRELILKL HLQQQKGSSS ENSTTRP00000014213/1-1041 EDIRELILKL HLQQQKGSSS ENSBTAP00000022522/1-1047 EDIRELILKL HLQQQKGSSS bmy_21338T0/1-658 EDIRELILKL HLQQQKGSSS BACU000034/1-737 EDIRELILKL HLQQQKGSSS