KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:36 2014 Check: 00 .. Name: ENSP00000263379/1-636 Len: 1052 Check: 4764 Weight: 1.00 Name: ENSBTAP00000022524/1-652 Len: 1052 Check: 8998 Weight: 1.00 Name: bmy_04837T0/1-532 Len: 1052 Check: 8747 Weight: 1.00 Name: BACU009390/1-984 Len: 1052 Check: 6797 Weight: 1.00 Name: ENSTTRP00000002222/1-577 Len: 1052 Check: 458 Weight: 1.00 // 1 50 ENSP00000263379/1-636 MRGGRGAPFW --LWPLPKLA LLPLLWVLFQ RTRPQGSAGP LQCYGVGPLG ENSBTAP00000022524/1-652 MRGTPAAPFP ----PRPKPM LLLLLLLLFS RTRPQGSPGP LQCYGVGPLG bmy_04837T0/1-532 MRGTRAAPFP PRPRPRPKLV LLPLLMLLFC RTRPQGE--- LRSELVSAL- BACU009390/1-984 MRGTRAAPFP --PRLRPKLV LLPLLTLLFC RTRPQGSPGP LQCYGFGPLG ENSTTRP00000002222/1-577 ---------- ---------- ----LMVLFC RTRPQGSPGP LQCYGFGPLG 51 100 ENSP00000263379/1-636 DLNCSWEPLG DLGAPSELHL QSQKYRSNKT QTVAVAA--- --GRSW---- ENSBTAP00000022524/1-652 DLNCSWEPHG DLGAPSMLYV QSQKYHSNKT WTVAVPT--- --GQNW---- bmy_04837T0/1-532 ---CRRAPQK RTSSRVN--- RKQPWATAVL WIWTLGRLEL LMGASWGPGS BACU009390/1-984 DLNCSWEPLG DLGAPSTLYL QSQKYHSNKT WTVAVPT--- --GQSW---- ENSTTRP00000002222/1-577 DLNCSWEPLG DLGAPSTLYL QSQKYHSNKT WTVAVPT--- --GQSR---- 101 150 ENSP00000263379/1-636 --VAIPREQ- -LTMSDKLLV WGTKAGQPLW PPVFVNLETQ MKPNAPRLGP ENSBTAP00000022524/1-652 --VTIPREQ- -LTMSDELLV WAAKAGQLLW SPVFVNLETR MKPDAPHLYP bmy_04837T0/1-532 PFHAVPPEPE VLTTSDELLV WVAKAGQPLW SPVFVNLGTR MKPDAPQLYP BACU009390/1-984 --VTIPREQ- -LTTSDELLV WVAKAGQPLW SPVFVNLETR MKPDAPQLYP ENSTTRP00000002222/1-577 --VTIPREQ- -LTTSDELLV WVARAGQPLW PPVFVNLETR MKPDAPQLYP 151 200 ENSP00000263379/1-636 DVDFSEDDPL EATVHWAPPT WPSHKVLICQ FHYRRCQEAA WTLLEPELKT ENSBTAP00000022524/1-652 DVDFSDDHPL EAVVQWAPPT WPPHKVLVCR FYYRRCR-MP WVMLEPEVKS bmy_04837T0/1-532 DVDFSEDDPL EATVQWAPPV WPPHKVLVCQ FYYRRCQEMA WTLLEPGVKS BACU009390/1-984 DVDFSEDDPL EATVQWAPPV WPPHKVLVCQ FYYRRCQEMA WTLLEPEVKS ENSTTRP00000002222/1-577 DVDFSEDDPL EATVQWAPPM WPPHKVLVCQ FYYRRCQEMA WMLLEPEVKS 201 250 ENSP00000263379/1-636 IPLTPVEIQD LELATGYKVY GRCRMEKEED LWGEWSPILS FQTPPSAPKD ENSBTAP00000022524/1-652 IPLMPIEIQD LELATGYEMF GRCQVDKEED LWGEWSPILP FQTPPSAPKD bmy_04837T0/1-532 IPLTPVDIQD LELATGYEVS GRCQVEEEED LWSEWSPILS FQTPPS---- BACU009390/1-984 IPLTPVDIQD LELATGYEVS GRCQVEKEED LWSEWSPILS FQTPPSAPKD ENSTTRP00000002222/1-577 IPLTPVDIQD LELATGYEVS GRCHVEEEED LWSEWSPILS FQTPPSAPKD 251 300 ENSP00000263379/1-636 VWVSGNLCGT PGGEEPLLLW KAPGPCVQVS YKVWFWVGGR ELSPEGITCC ENSBTAP00000022524/1-652 VWIMGNICGA PGGQEPLLLW KASGLCMQVT YRVWIQVKDQ EVIQEETPYC bmy_04837T0/1-532 ---------- ---------- ---------- --------DQ EVIQEETPCC BACU009390/1-984 VWISGNICGA PGGQEPLLLW KASGHCVQVS YRVWFQIKDQ EVNQEETPCC ENSTTRP00000002222/1-577 VWISGNICGA PGGQEPLLLW KASGHCVQVS YRVWFQIKDQ EVIQEETSCC 301 350 ENSP00000263379/1-636 CSLIPSGAEW ARVSAVNATS WEPLTNLSLV CLDSASAPRS VAVSSIAGST ENSBTAP00000022524/1-652 NFSIPTQAEW VGVSAVNATS WELPTNLSLT CLGPDSAPHG VVVRSISGNT bmy_04837T0/1-532 NFSIPTQAEW AGVSAINATS WEPPTNLSLA CLGPDFAPHG VVVSIIPASS BACU009390/1-984 SFSIPTQAEW AGVSAINATS WEPPTNLSLA CLGPGFAPHG VVVSSIPASS ENSTTRP00000002222/1-577 NISIPTQAEW AGVSAINATS WEPPTNLSLA CLGPGFAPRG VVVSIIPVSS 351 400 ENSP00000263379/1-636 ELLVTWQPGP GEPLEHVVDW ARDGDPLEKL NWVRLPPGNL SALLPGNFTV ENSBTAP00000022524/1-652 ELLVTWQQEP GELQEHVVDW IRDGDPVEDL NWVRLPPGNL SAVLPVDFKE bmy_04837T0/1-532 DLLVTWQQGS GELQEYVVDW ARDGDPLGDL NWVWLPPGNL SAVLPGDFEG BACU009390/1-984 DLLVTWQQGS GELQEHVVDW ARDGDPLEDL NWVWLPPGNL SAVLPGDFEG ENSTTRP00000002222/1-577 DLLVTWQQGS GGLQEHVVDW ARDGDPLEDL NWVWLPPGNL SAVLPGDFEG 401 450 ENSP00000263379/1-636 GVPYRITVTA VSASGLASAS SVWGFREELA PLVGPTLWRL QDAPPGTPAI ENSBTAP00000022524/1-652 GVPYRITVTA ISPWGLAPAP SVWKFREELV PLSGPVVWRI QDAPSGTPAV bmy_04837T0/1-532 GVPYQITVTA VSPWGLAPAP SVWKFREELV PLAGPMLWRL QDAPPGTPAV BACU009390/1-984 GVPYQITVTA VSPWGLAPAP SVWKFREELV ---------- ---------- ENSTTRP00000002222/1-577 GVPYQITVTA VSPWGLAPAP SVWKFREELV PLAGPVLWRL QDSPPGTPAV 451 500 ENSP00000263379/1-636 AWGEVPRHQL RGHLTHYTLC AQSGTSPSVC MNVSGNTQSV TLPDLPWGPC ENSBTAP00000022524/1-652 AWGEVPRQQL RGHLTHYTLC TQSGTRPSVC KNVTGSTRTI TLPDLHWGPC bmy_04837T0/1-532 AWGEVPRHQL RGHLTHYTLC AQSGTRPSVC MN-------- ---------- BACU009390/1-984 ---------- ---------- ---------- ---SGSTRTI TLPDLHWGTC ENSTTRP00000002222/1-577 AWGEVPRHQL RGHLTHYTLC AQSGTRPSVC MNVSGSTRTI TLPDLHWGTC 501 550 ENSP00000263379/1-636 ELWVTASTIA GQGPPGPILR LHLPDNTLRW KVLPGILFLW GLFLLGCGLS ENSBTAP00000022524/1-652 KLWMTASTIA GQGPPGPSLQ FHLPDNTLNW KVLSVVFLLW GLLLTGCGVS bmy_04837T0/1-532 ---------- ---------- ----DNTLKW KVLPVVFLIW GLLLTGCGVS BACU009390/1-984 ELWVTASTIA GQGPPGPSLR FHLPDNTLKW KVLPVVFLIW GLLLTGCGVS ENSTTRP00000002222/1-577 ELWVTASTIA GQGPPGPSLR FHLPDNTLKW KVLPVVLLVW GLLLTGCGVS 551 600 ENSP00000263379/1-636 LATSGRCYHL RHKVLPRWVW EKVPDPANSS SGQPHMEQVP EAQPLGDLPI ENSBTAP00000022524/1-652 LATCGRCVHL QHKVLPHWVW EKIPDPANSN FSLPHMKEVP QAQPPGDSPI bmy_04837T0/1-532 LATSGRCVHL RHKVLPPWVW EKVPDPANSN FSLPHMKEVP QAQPPGDSPI BACU009390/1-984 LATSGRCVHL RHKVLPHWVW EKVPDPANSN FSLPHMKEVS QAQPPGDSPI ENSTTRP00000002222/1-577 LATSGRCVHL RHKVLPHWVW EKVPDPANSN FSLPHMK-VP -AQPPGDLPI 601 650 ENSP00000263379/1-636 LEVEEMEPPP VMESSQP--- ---------- ---------- ---------- ENSBTAP00000022524/1-652 LEVEEIEQVP VKE---P--- ---------- ---------- ---------- bmy_04837T0/1-532 LEVEEIEQVP ITE---A--- ---------- ---------- ---------- BACU009390/1-984 LEVEEIEQGR VREAAGAGYA LELADGDCSH RCRAGQCVPA LGIKTPALGA ENSTTRP00000002222/1-577 LEVE-IEQVP IME---S--- ---------- ---------- ---------- 651 700 ENSP00000263379/1-636 ---------- ---------- ---AQATAPL DSGYEKHF-- ---------- ENSBTAP00000022524/1-652 ---------- ---------- ---PQPLAPL DSGYEKHF-- ---------- bmy_04837T0/1-532 ---------- ---------- ---PQASAPL DSGRR----- ---------- BACU009390/1-984 KASELLRTLD TEAPGPESGA LGSSEARGPE PPGLDREIPG PAAEQDTEVP ENSTTRP00000002222/1-577 ---------- ---------- ---SQA---- ---------- ---------- 701 750 ENSP00000263379/1-636 -------LPT PEELGLLGPP RPQVLA---- ---------- ---------- ENSBTAP00000022524/1-652 -------LPT PEELGLLSPT AGSRLRPELT SGGERGAPLT DEDIEAQS-- bmy_04837T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU009390/1-984 RPGGEVPVPS PDQGTETPEQ ESEVLGPSAG QEAERPGPTA AESFESPGRG ENSTTRP00000002222/1-577 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000263379/1-636 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022524/1-652 ---------- ---------- ---------- ---------- ---------- bmy_04837T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU009390/1-984 SDDAEPCEAR GAGLLEQCPS QGPETSSESN SESPQLRFLL RSETPQQPPE ENSTTRP00000002222/1-577 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000263379/1-636 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022524/1-652 ---------- ---------- ---------- ---------- ---------- bmy_04837T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU009390/1-984 EPLMETPIER EIRRSCEREE SLRRSRGLSP GRAGRELVEL RVRPVLTLPG ENSTTRP00000002222/1-577 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000263379/1-636 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022524/1-652 ---------- ---------- ---------- ---------- ---------- bmy_04837T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU009390/1-984 PGSALPRALE RARAGAQMQR DIEREAHRQA ALAXXXXXXX XXXXXXXXXX ENSTTRP00000002222/1-577 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000263379/1-636 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022524/1-652 ---------- ---------- ---------- ---------- ---------- bmy_04837T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU009390/1-984 XXXXXXXXXX XXXXXXXEGS ADPQRLPEPG GRPRSVVQSR CPVLARAPPP ENSTTRP00000002222/1-577 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000263379/1-636 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022524/1-652 ---------- ---------- ---------- ---------- ---------- bmy_04837T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU009390/1-984 IAPSLLEQEV REVNEREREL QRQRLSVYGT AEFKEPAPSL TGAATSLFAS ENSTTRP00000002222/1-577 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000263379/1-636 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022524/1-652 ---------- ---------- ---------- ---------- ---------- bmy_04837T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU009390/1-984 CASLRMLYAS VRQSVDYGFV SRDYISQKAA RAGGVPLSPR GGERRSERTL ENSTTRP00000002222/1-577 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000263379/1-636 -- ENSBTAP00000022524/1-652 -- bmy_04837T0/1-532 -- BACU009390/1-984 SL ENSTTRP00000002222/1-577 --