KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:42 2014 Check: 00 .. Name: ENSTTRP00000015018/1-906 Len: 970 Check: 9402 Weight: 1.00 Name: BACU002442/1-612 Len: 970 Check: 961 Weight: 1.00 Name: ENSP00000321999/1-593 Len: 970 Check: 6501 Weight: 1.00 Name: bmy_05621T0/1-602 Len: 970 Check: 9608 Weight: 1.00 Name: ENSBTAP00000022555/1-589 Len: 970 Check: 9042 Weight: 1.00 // 1 50 ENSTTRP00000015018/1-906 MKIHRVLAAN SAIPGSIPLP ALKASTLQDE RRHSAPPAPP SPEHRQPVQE BACU002442/1-612 MGAARIA--- ---PG----- ---------- ---------- ---------- ENSP00000321999/1-593 MGTARIA--- ---PG----- ---------- ---------- ---------- bmy_05621T0/1-602 MGAARIA--- ---PG----- ---------- ---------- ---------- ENSBTAP00000022555/1-589 MGAARIA--- ---PG----- ---------- ---------- ---------- 51 100 ENSTTRP00000015018/1-906 GQAEGRKSQH LSAMAWWGRK PAQARQTDRR QQGHTHADLY PETVHMHVHR BACU002442/1-612 ---------- ---------- ---------- ---------- ---------- ENSP00000321999/1-593 ---------- ---------- ---------- ---------- ---------- bmy_05621T0/1-602 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022555/1-589 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015018/1-906 HLRLTSQMCV LDDPHVRIYR DGHTRVHTPA TQGCAATHTK DAHAPLLSET BACU002442/1-612 ---LALLLCC ---------- ---------- ---------- ---------- ENSP00000321999/1-593 ---LALLLCC ---------- ---------- ---------- ---------- bmy_05621T0/1-602 ---LALLLCC ---------- ---------- ---------- ---------- ENSBTAP00000022555/1-589 ---LALLLCC ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015018/1-906 SRTQSQPSQL ETPWPKPLLL PPRDSVDADD VMTKEEQIFL LHRAQAQCEK BACU002442/1-612 ---------- ------PVLS SAYVLVDADD VMTKEEQIFL LHRAQAQCEK ENSP00000321999/1-593 ---------- ------PVLS SAYALVDADD VMTKEEQIFL LHRAQAQCEK bmy_05621T0/1-602 ---------- ------PVLS SAYVLVDADD VMTKEEQIFL LHRAQAQCEK ENSBTAP00000022555/1-589 ---------- ------PVLS SAYALVDADD VMTKEEQIFL LHRAQAQCEK 201 250 ENSTTRP00000015018/1-906 RLKEVLQRPV LSTAITGLIS PADIMESGRG WASASTSGKP KKEKASGKLY BACU002442/1-612 RLKEVLQR-- ---------- PADIMESDKG WASASTSGKP KKEKASGKLY ENSP00000321999/1-593 RLKEVLQR-- ---------- PASIMESDKG WTSASTSGKP RKDKASGKLY bmy_05621T0/1-602 RLKEVLQR-- ---------- PADIMESDKG WASASTSGKP KKEKASGKLY ENSBTAP00000022555/1-589 RLKEVLQR-- ---------- PADIMESDKG WASASTSGKP KKEKPSGKLH 251 300 ENSTTRP00000015018/1-906 PESEEDKEVS AGSRHRGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002442/1-612 PESEEDKEVS AGSRHRGHPC LPEWDHILCW PLGAPGEVVA MPCPDYIYDF ENSP00000321999/1-593 PESEEDKEAP TGSRYRGRPC LPEWDHILCW PLGAPGEVVA VPCPDYIYDF bmy_05621T0/1-602 PESEEDKEVS AGSRHRGHPC LPEWDHILCW PLGAPGEVVA MPCPDYIYDF ENSBTAP00000022555/1-589 PESEEDKEVP TGSRPRGRPC LPEWDHILCW PLGAPGEVVA MPCPDYIYDF 301 350 ENSTTRP00000015018/1-906 XXXXXXWSRR GEGRAWGVAK G---VWRQRH NSL-FRSTPT KRR------- BACU002442/1-612 NHKGHAYRRC DRNGSWELVP GHNRTWANYS ECVKFLTNET RERGSDSSSP ENSP00000321999/1-593 NHKGHAYRRC DRNGSWELVP GHNRTWANYS ECVKFLTNET RER------- bmy_05621T0/1-602 NHKGHAYRRC DRNGSWELVP GHNRTWANYS ECVKFLTNET RER------- ENSBTAP00000022555/1-589 NHKGHAYRRC DRNGSWELVP GHNRTWANYS ECVKFLTNET RER------- 351 400 ENSTTRP00000015018/1-906 ---------- --FVPSRRVS PCPHPRCCRA LR--RRL-HC TRNYIHMHLF BACU002442/1-612 PVQEVFDRLG MIYTVGYSVS LASLTVAVLI LAYFRPLTHT SLRPLHLSAL ENSP00000321999/1-593 ---EVFDRLG MIYTVGYSVS LASLTVAVLI LAYFRRL-HC TRNYIHMHLF bmy_05621T0/1-602 ---EVFDRLG MIYTVGYSVS LASLTVAVLI LAYFRRL-HC TRNYIHMHLF ENSBTAP00000022555/1-589 ---EVFDRLG MIYTVGYSVS LASLTVAVLI LAYFRRL-HC TRNYIHMHLF 401 450 ENSTTRP00000015018/1-906 L------SFM -LRAVSIFVK DAVLYSGATL DEAERLTEEE LR----AIAQ BACU002442/1-612 LPGPVAQSFV SVPPPGTFIN TPPPAQDPQS PHLFTLTPHP RRQCPPAWAT ENSP00000321999/1-593 L------SFM -LRAVSIFVK DAVLYSGATL DEAERLTEEE LR----AIAQ bmy_05621T0/1-602 L------SFM -LRAVSIFVK DAVLYSGATL DEAERLTEEE LR----AIAQ ENSBTAP00000022555/1-589 L------SFM -LRAVSIFVK DAVLYSGTAL DEAERLTEEE LR----AIAQ 451 500 ENSTTRP00000015018/1-906 APPPPA-AAA GYVSAPPAAR ARRHQWLRGS PTHPAAPLPS PRLSPAATRF BACU002442/1-612 SPPHTPPQPL PSV------- ---------- ---------- ---------- ENSP00000321999/1-593 APPPPATAAA GYA------- ---------- ---------- ---------- bmy_05621T0/1-602 APPPPA-AAA GYV------- ---------- ---------- ---------- ENSBTAP00000022555/1-589 APPPPA-AAA GYV------- ---------- ---------- ---------- 501 550 ENSTTRP00000015018/1-906 SHSHPPLCVH CTSQPCFRPC CPELVFPPRT FINTPASAPV TVTFFLYFLA BACU002442/1-612 ---------- ---------- ---------- ------GCRV TVTFFLYFLA ENSP00000321999/1-593 ---------- ---------- ---------- ------GCRV AVTFFLYFLA bmy_05621T0/1-602 ---------- ---------- ---------- ------GCRV TVTFFLYFLA ENSBTAP00000022555/1-589 ---------- ---------- ---------- ------GCRV AVTFFLYFLA 551 600 ENSTTRP00000015018/1-906 TNYYWILVEG LYLHSLIFMA FFSEKKYLWG FTIFGWGLPA IFVAVWVSVR BACU002442/1-612 TNYYWILVEG LYLHSLIFMA FFSEKKYLWG FTIFGWGLPA IFVAVWVSVR ENSP00000321999/1-593 TNYYWILVEG LYLHSLIFMA FFSEKKYLWG FTVFGWGLPA VFVAVWVSVR bmy_05621T0/1-602 TNYYWILVEG LYLHSLIFMA FFSEKKYLWG FTIFGWGLPA IFVAVWVSVR ENSBTAP00000022555/1-589 TNYYWILVEG LYLHSLIFMA FFSEKKYLWG FTVFGWGLPA IFVAVWVGVR 601 650 ENSTTRP00000015018/1-906 ATLANTGVQP RDAA------ --PSLPQ--- ---------- --LNFILFIN BACU002442/1-612 ATLANTGCWD LSSGNKKWII QVPILASIV- ---------- --LNFILFIN ENSP00000321999/1-593 ATLANTGCWD LSSGNKKWII QVPILASIV- ---------- --LNFILFIN bmy_05621T0/1-602 ATLANTGCWD LSSGNKKWII QVPILASIVG AASRRSPPSL PQLNFILFIN ENSBTAP00000022555/1-589 ATLANTGCWD LSSGNKKWII QVPILASIV- ---------- --LNFILFIN 651 700 ENSTTRP00000015018/1-906 IVRVLATKLR ETNAGRCDTR QQYRGSGSIL TPLPCWPRKL LKSTLVLMPL BACU002442/1-612 IVRVLATKLR ETNAGRCDTR QQY------- -------RKL LKSTLVLMPL ENSP00000321999/1-593 IVRVLATKLR ETNAGRCDTR QQY------- -------RKL LKSTLVLMPL bmy_05621T0/1-602 IVRVLATKLR ETNAGRCDTR QQY------- -------RKL LKSTLVLMPL ENSBTAP00000022555/1-589 IVRVLATKLR ETNAGRCDTR QQY------- -------RKL LKSTLVLMPL 701 750 ENSTTRP00000015018/1-906 FGVHYIVFMA TPYTEVSGTL WQVQMHYEML FNSFQVRSPV GGAGGVGKAA BACU002442/1-612 FGVHYIVFMA TPYTEVSGTL WQVQMHYEML FNSF------ ---------- ENSP00000321999/1-593 FGVHYIVFMA TPYTEVSGTL WQVQMHYEML FNSF------ ---------- bmy_05621T0/1-602 FGVHYIVFMA TPYTEVSGTL WQVQMHYEML FNSF------ ---------- ENSBTAP00000022555/1-589 FGVHYIVFMA TPYTEVSGTL WQVQMHYEML FNSF------ ---------- 751 800 ENSTTRP00000015018/1-906 STLSRCSSGP PSTLSPQGFF VAIIYCFCNG EVQAEIKKSW SRWTLALDFK BACU002442/1-612 ---------- ------QGFF VAIIYCFCNG EVQAEIKKSW SRWTLALDFK ENSP00000321999/1-593 ---------- ------QGFF VAIIYCFCNG EVQAEIKKSW SRWTLALDFK bmy_05621T0/1-602 ---------- ------QGFF VAIIYCFCNG EVQAEIKKSW SRWTLALDFK ENSBTAP00000022555/1-589 ---------- ------QGFF VAIIYCFCNG EVQAEIKKSW SRWTLALDFK 801 850 ENSTTRP00000015018/1-906 RKARSGSSSY SYGPMVSHTS VTNVGPRTGL GLPLSPRLLP ATTANGHRQL BACU002442/1-612 RKARSGSSSY SYGPMVSHTS VTNVGPRMGL GLPLSPRLLP AATANGHPQL ENSP00000321999/1-593 RKARSGSSSY SYGPMVSHTS VTNVGPRVGL GLPLSPRLLP TATTNGHPQL bmy_05621T0/1-602 RKARSGSSSY SYGPMVSHTS VTNVGPRTGL GLPLSPRLLP AATANGHPQL ENSBTAP00000022555/1-589 RKARSGSSSY SYGPMVSHTS VTNVGPRTGL GLPLSPRLLP AATTNGHPPL 851 900 ENSTTRP00000015018/1-906 PGHTKPGSPA ---LQTTPPA VAAPKDDGFL NGSCSGLDEE VSAPDRPPVL BACU002442/1-612 PSHTKPGSPA ---VQTTPPA VAAPKDDGFL NGSCSGLDEE ASAPERPPVL ENSP00000321999/1-593 PGHAKPGTPA LETLETTPPA MAAPKDDGFL NGSCSGLDEE ASGPERPPAL bmy_05621T0/1-602 PGHTKPGSPA ---LQTTPPA VAAPKDDGFL NGSCSGLDEE ASAPERPPVL ENSBTAP00000022555/1-589 PGHTKSGSPA ---LQATPPA VAAPKEDGFL NGSCSGLDEE ACAPERPPVL 901 950 ENSTTRP00000015018/1-906 LQEEWETVIS RDHLEGQLLE SRAVSYSCIL SPWNSVQHKV DTQETGINAI BACU002442/1-612 LQEEWETVM- ---------- ---------- ---------- ---------- ENSP00000321999/1-593 LQEEWETVM- ---------- ---------- ---------- ---------- bmy_05621T0/1-602 LQEEWETVM- ---------- ---------- ---------- ---------- ENSBTAP00000022555/1-589 LQEEWETVM- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000015018/1-906 PLLGAAAGPR CSSEPHGEVT BACU002442/1-612 ---------- ---------- ENSP00000321999/1-593 ---------- ---------- bmy_05621T0/1-602 ---------- ---------- ENSBTAP00000022555/1-589 ---------- ----------