KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:42 2014 Check: 00 .. Name: ENSTTRP00000006294/1-517 Len: 728 Check: 3102 Weight: 1.00 Name: bmy_04570T0/1-493 Len: 728 Check: 4849 Weight: 1.00 Name: ENSP00000363003/1-580 Len: 728 Check: 6428 Weight: 1.00 Name: BACU007298/1-714 Len: 728 Check: 8580 Weight: 1.00 Name: ENSBTAP00000022557/1-580 Len: 728 Check: 4369 Weight: 1.00 // 1 50 ENSTTRP00000006294/1-517 ---------- ---------- ---------- ---------- ---------- bmy_04570T0/1-493 ---------- ----MAKSIP VHKPPRSFPL Q--------- ---------- ENSP00000363003/1-580 ---------- ---------- ---------- ---------- ---------- BACU007298/1-714 MECIEPLQHS KHAVLLSQAP FPEPCQAFCR QPGPQCLIRG PPEAAFHLCN ENSBTAP00000022557/1-580 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006294/1-517 ---------- ---------- ---------- ---------- ---------- bmy_04570T0/1-493 ---------- ---------- ---------- ---------- ---------- ENSP00000363003/1-580 ---------- ---------- ---------- ---------- ---------- BACU007298/1-714 VKMGRPNQRR EGTHPWFRSK LAGRVNRISY VPMEALLDSQ RGQTLDVSRF ENSBTAP00000022557/1-580 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006294/1-517 ---------- ---------- ---------- ---------- ---------- bmy_04570T0/1-493 ---------- ---------- ---------- CQWKLMENRG LDPGTRDSYG ENSP00000363003/1-580 ---------- ---------- ---------- -----MENRA LDPGTRDSYG BACU007298/1-714 PTKATDLMPA MPGSPRRDKS QGTDMLGHCE CQWKLMENRG LDPGTRDSYG ENSBTAP00000022557/1-580 ---------- ---------- ---------- -----MENRA LDPGTRDSYG 151 200 ENSTTRP00000006294/1-517 ---------- ---------- ---------- ---------- -------VSS bmy_04570T0/1-493 ATSHLPNKGA LAKAKNNFKD LMSKLTEGQY VLCRWTDGLY YLGKIKRVSS ENSP00000363003/1-580 ATSHLPNKGA LAKVKNNFKD LMSKLTEGQY VLCRWTDGLY YLGKIKRVSS BACU007298/1-714 ATSHLPNKGA LAKAKNNFKD LMSKLTEGQY VLCRWTDGLY YLGKIKRVSS ENSBTAP00000022557/1-580 ATSHLPNKGA LAKAKNNFKD LMSKLTEGQY VLCRWTDGLY YLGKIKRVSS 201 250 ENSTTRP00000006294/1-517 SKQSCLVTVE DNSKYWVLWK DIQHAGVPGE EPKCNICLGK TSGPLNEILI bmy_04570T0/1-493 SKQSCLVTFE DNSKYWVLWK DIQHAGVPGE EPKCNICLGK TSGPLNEILI ENSP00000363003/1-580 SKQSCLVTFE DNSKYWVLWK DIQHAGVPGE EPKCNICLGK TSGPLNEILI BACU007298/1-714 SKQSCLVTFE DNSKYWVLWK DIQHAGVPGE EPKCNICLGK TSGPLNEILI ENSBTAP00000022557/1-580 SKQSCLVTFE DNSKYWVLWK DIQHAGVPGE EPKCNICLGK TSGPLNEILI 251 300 ENSTTRP00000006294/1-517 CGKCGLG--- ---------- YHQQCHIPIA GSADRPLLTP WFCRRCIFAL bmy_04570T0/1-493 CGKCGLGECD EQGVEKAQTC YHQQCHIPIA GSADRPLLTP WFCRRCIFAL ENSP00000363003/1-580 CGKCGLG--- ---------- YHQQCHIPIA GSADQPLLTP WFCRRCIFAL BACU007298/1-714 CGKCGLG--- ---------- YHQQCHIPIA GSADRPLLTP WFCRRCIFAL ENSBTAP00000022557/1-580 CGKCGLG--- ---------- YHQQCHIPIA GSADRPLLTP WFCRRCIFAL 301 350 ENSTTRP00000006294/1-517 AVRKGGALKK GAIARTLQAV KMVLSYQPEE LEWDSPHRTN QQQCYCYCGG bmy_04570T0/1-493 AVRKGGALKK GAIARTLQAV KMVLSYQPEE LEWDSPHRTN QQQCYCYCGG ENSP00000363003/1-580 AVRKGGALKK GAIARTLQAV KMVLSYQPEE LEWDSPHRTN QQQCYCYCGG BACU007298/1-714 AVRKGGALKK GAIARTLQAV KMVLSYQPEE LEWDSPHRTN QQQCYCYCGG ENSBTAP00000022557/1-580 AVRKGGALKK GAIARTLQAV KMVLSYQPEE LEWDSPHRTN QQQCYCYCGG 351 400 ENSTTRP00000006294/1-517 PGEWYLRMLQ CYRCRQWFHE ACTQCLNEPM MFGDRFYLFF CSVCNQGPEY bmy_04570T0/1-493 PGEWYLRMLQ CYRCRQWFHE ACTQCLNEPM MFGDRFYLFF CSVCNQGPEY ENSP00000363003/1-580 PGEWYLRMLQ CYRCRQWFHE ACTQCLNEPM MFGDRFYLFF CSVCNQGPEY BACU007298/1-714 PGEWYLRMLQ CYRCRQWFHE ACTQCLNEPM MFGDRFYLFF CSVCNQGPEY ENSBTAP00000022557/1-580 PGEWYLRMLQ CYRCRQWFHE ACTQCLNEPM MFGDRFYLFF CSVCNQGPEY 401 450 ENSTTRP00000006294/1-517 IERLPLRWVD VVHLALYNLG VQSKKKYFDF EEILAFVNHH WELLQLGKLT bmy_04570T0/1-493 IERLPLRW-- ---------- ---------- ---------- ---------- ENSP00000363003/1-580 IERLPLRWVD VVHLALYNLG VQSKKKYFDF EEILAFVNHH WELLQLGKLT BACU007298/1-714 IERLPLRWVD VVHLALYNLG VQSKKKYFDF EEILAFVNHH WELLQLGKLT ENSBTAP00000022557/1-580 IERLPLRWVD VVHLALYNLG VQSKKKYFDF EEILAFVNHH WELLQLGKLT 451 500 ENSTTRP00000006294/1-517 STPVTDRGPH LLNALNSYKS RFLCGKEIKK KKCIFRLRIR VPPNPPGKLL bmy_04570T0/1-493 ---------- ---------- -FLCGKEIKK KKCIFRLRIR VPPNPPGKLL ENSP00000363003/1-580 STPVTDRGPH LLNALNSYKS RFLCGKEIKK KKCIFRLRIR VPPNPPGKLL BACU007298/1-714 STPVTDRGPH LLNALNSYKS RFLCGKEIKK KKCIFRLRIR VPPNPPGKLL ENSBTAP00000022557/1-580 STPVTDRGPH LLNALNSYKS RFLCGKEIKK KKCIFRLRIR VPPNPPGKLL 501 550 ENSTTRP00000006294/1-517 PDKGLVPTEN G-ASELRKRG KSKPGLLPHD FQQQKRRVYR RKRSKFLLED bmy_04570T0/1-493 PDKGLVPTEN G-ASELRKRG KSKPG----- ---------- ---------- ENSP00000363003/1-580 PDKGLLPNEN SASSELRKRG KSKPGLLPHE FQQQKRRVYR RKRSKFLLED BACU007298/1-714 PDKGLVPTEN G-ASELRKRG KSKPGLLPHE FQQQKRRVYR RKRSKFLLED ENSBTAP00000022557/1-580 PDKGLAPPEH GAASELRRRG KSKPSLLPHE FQQQKRRVYR RKRSKFLLED 551 600 ENSTTRP00000006294/1-517 AIPSSDFTSA WSTNHHLASI FDFTLDEIQS LKSASSGXXX XXXXXXXXXX bmy_04570T0/1-493 ---------- ---------- ---------- ---ASSGQTF FSDVDSTDAA ENSP00000363003/1-580 AIPSSDFTSA WSTNHHLASI FDFTLDEIQS LKSASSGQTF FSDVDSTDAA BACU007298/1-714 AIPSSDFTSA WSTNHHLASI FDFTLDEIQS LKSASSGQTF FSDVDSTDAA ENSBTAP00000022557/1-580 AIPSSDFTSA WSTNHHLASI FDFTLDEIQS LKSASSGQTF FSDVDSTDAA 601 650 ENSTTRP00000006294/1-517 XXXXXXXXXX XXXXXRTVGS RKRKLAAKAY MPLRAKRRAA ELGGRCPSDS bmy_04570T0/1-493 STSGSASTSL SYDSRRTVGS RKRKLAAKAY MPLRAKRRAA ELGGRCPSDS ENSP00000363003/1-580 STSGSASTSL SYDSRWTVGS RKRKLAAKAY MPLRAKRWAA ELDGRCPSDS BACU007298/1-714 STSGSASTSL SYDSRRTVGS RKRKLAAKAY MPLRAKRRAA ELGGRCPSDS ENSBTAP00000022557/1-580 STSGSASTSL SYDSRRTVGS RKRKLAAKAY VPLRAKRRAA EPGGRCASDS 651 700 ENSTTRP00000006294/1-517 SAEGASGPER PDEGIDSHTF ESISEDDSSL SHLKSSITNY FGAAGRLACG bmy_04570T0/1-493 SAEGASGPER PDEGIDSHTF ESISEDDSSL SHLKSSITNY FGAAGRLACG ENSP00000363003/1-580 SAEGASVPER PDEGIDSHTF ESISEDDSSL SHLKSSITNY FGAAGRLACG BACU007298/1-714 SAEGASGPER PDEGIDSHTF ESISEDDSSL SHLKSSITNY FGAAGRLACG ENSBTAP00000022557/1-580 SAEGASGPER PDEGVDSHTF ESISEDDSSL SHLKSSITNY FGAAGRLACG 701 750 ENSTTRP00000006294/1-517 EKYQVLARRV TPEGKVQYLV EWEGTTPY bmy_04570T0/1-493 EKYQVLARRV TPEGKVQYLV EWEGTTPY ENSP00000363003/1-580 EKYQVLARRV TPEGKVQYLV EWEGTTPY BACU007298/1-714 EKYQVLARRV TPEGKVQYLV EWEGTTPY ENSBTAP00000022557/1-580 EKYQVLARRV TPEGKVQYLV EWEGTTPY