KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:43 2014 Check: 00 .. Name: ENSTTRP00000002310/1-966 Len: 1027 Check: 5565 Weight: 1.00 Name: ENSP00000340466/1-966 Len: 1027 Check: 3884 Weight: 1.00 Name: ENSBTAP00000022558/1-966 Len: 1027 Check: 7280 Weight: 1.00 Name: bmy_19283T0/1-1009 Len: 1027 Check: 5316 Weight: 1.00 Name: BACU005372/1-976 Len: 1027 Check: 4658 Weight: 1.00 // 1 50 ENSTTRP00000002310/1-966 ---------- ---------- ---------- ---MAAVAAV AARRRRSWTG ENSP00000340466/1-966 ---------- ---------- ---------- ---MAAVAAV AARRRRSWAS ENSBTAP00000022558/1-966 ---------- ---------- ---------- ---MAAIAAV EARRRRSWTA bmy_19283T0/1-1009 GQSGSRKGRA LRYVAQRALG EGKLRVREQT RHKMAAVAAV AARRRRSWTG BACU005372/1-976 ---------- ---------- ---------- ---MAAVAAV AARRRRSWTG 51 100 ENSTTRP00000002310/1-966 LVLACLGVCL GITLAVDRSN FKTCEESSFC K--------- ---RQRSIRP ENSP00000340466/1-966 LVLAFLGVCL GITLAVDRSN FKTCEESSFC K--------- ---RQRSIRP ENSBTAP00000022558/1-966 LVLACLGVCL GITFAVDRSN FKTCEESSFC K--------- ---RQRSIRP bmy_19283T0/1-1009 LVLACLGVCL GXTLAVDRSN FKTCEESSFC K--------- ---RQRSIRP BACU005372/1-976 LVLACLGVCL GISLAVDRSN FKTCEESSFC KYDISGRLER KVGRQRSIRP 101 150 ENSTTRP00000002310/1-966 GHSPYRALLD SLQLGPDALT VHLINEVTKV LLVLELQGLR RNMTRIRIDE ENSP00000340466/1-966 GLSPYRALLD SLQLGPDSLT VHLIHEVTKV LLVLELQGLQ KNMTRFRIDE ENSBTAP00000022558/1-966 GHSPYRALLD SLQLGPDALT VHLINEVTKV VLVLELQGLQ KNMTRIRIDE bmy_19283T0/1-1009 GHSPYRALLD SLQLGPDALT VHLINEVTKV LLVLELQGLR KNMTRIRIDE BACU005372/1-976 GHSPYRALLD SLQLGPDALT VHLINEVTKV LLVLELQGLR KNMTRIRIDE 151 200 ENSTTRP00000002310/1-966 LEPRRPRYRV PDVLVADPPT AGLSVSGRDA NSVELTMAEG PYKIILTAQP ENSP00000340466/1-966 LEPRRPRYRV PDVLVADPPI ARLSVSGRDE NSVELTMAEG PYKIILTARP ENSBTAP00000022558/1-966 LEPRRPRYRV PDVLVADPPT AGLSVSGRDD NSVELTVAEG PYKIILTARP bmy_19283T0/1-1009 LEPRRPRYRV PDVLVADPPT AGLSVSGRDD NSVELTMAEG PYKIILTARP BACU005372/1-976 LEPRRPRYRV PDVLVADPPT AGLSVSGRDD NSVELTMAEG PYKIILTARP 201 250 ENSTTRP00000002310/1-966 FRLDLLEDRS LLLSVNARGL LNFEHQRAPR VSFSDKVSLT LGSIWDKIKN ENSP00000340466/1-966 FRLDLLEDRS LLLSVNARGL LEFEHQRAPR VSFSDKVNLT LGSIWDKIKN ENSBTAP00000022558/1-966 FRLDLLEDRS LLLSVNARGL LNLEHQRTPR VSFSDKVSLT LGSIWDRIKN bmy_19283T0/1-1009 FRLDLLEDRS LLLSVNARGL LSFEHQRAPR VSFSDKVSLT LGSIWDKIKN BACU005372/1-976 FRLDLLEGRS LLLSVNARGL LHFEHQRAPR VSFSDKVSLT LGSIWDKIKN 251 300 ENSTTRP00000002310/1-966 LFSRQGSKDP AEGDGAQPEE TPGDGDK--- ---------- ---XXXXXXX ENSP00000340466/1-966 LFSRQGSKDP AEGDGAQPEE TPRDGDK--- ---------- ---PEETQGK ENSBTAP00000022558/1-966 VFSRQGSKEP AEGDGAQPEE TPGDDNK--- ---------- ---PDETQGK bmy_19283T0/1-1009 LFSSPSSLPP LDW-SRQLSY LPGKDQKTQL RAMGPSPRKH LGMPDETQGK BACU005372/1-976 LFSSPSSLPP LDW-SRQLSY LPGKDQKTQL RAMGPSPRKH LGMPDETQGK 301 350 ENSTTRP00000002310/1-966 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000340466/1-966 AEKDEPGAWE ETFKTHSDSK PYGPMSVGLD FSLPGMEHVY GIPEHADNLR ENSBTAP00000022558/1-966 PEHDEPGAWE ETFKTHSDSK PYGPTSVSLD FSLPGMEHVY GIPEHADNLR bmy_19283T0/1-1009 AEQDEPGAWE ETFKTHTDSK PYGPTSVSLD FSLPGMEHVY GIPEHADNLR BACU005372/1-976 AEQDEPGAWE ETFKTHTDSK PYGPTSVSLD FSLPGMEHVY GIPEHADNLR 351 400 ENSTTRP00000002310/1-966 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000340466/1-966 LKVTEGGEPY RLYNLDVFQY ELYNPMALYG SVPVLLAHNP HRDLGIFWLN ENSBTAP00000022558/1-966 LKVTEGGEPY RLYNLDVFQY ELYNRMALYG SVPVLLAHSP LRDLGIFWLN bmy_19283T0/1-1009 LKVTEGGEPY RLYNLDVFQY ELYNRMALYG SVPVLLAHSP HRDLGIFWLN BACU005372/1-976 LKVTEGGEPY RLYNLDVFQY ELYNRMALYG SVPVLLAHGP HRDLGIFWLN 401 450 ENSTTRP00000002310/1-966 XXXXXXXXXX XXXXXTLFGK MLDYLQGSGE TPQTDVRWIS ESGIIDVFLL ENSP00000340466/1-966 AAETWVDISS NTAGKTLFGK MMDYLQGSGE TPQTDVRWMS ETGIIDVFLL ENSBTAP00000022558/1-966 AAETWVDISS NTAGKTLFGK MLDYLQGSGE TPQTDVRWMS ESGIIDVFLM bmy_19283T0/1-1009 AAETWVDISS NTA-----GK MLDYLQGSGE TPQTDVRWIS ESGIIDVFLL BACU005372/1-976 AAETWVDISS NTAGKTLFGK MLDYLQGSGE TPQTDVRWIS ESGIIDVFLL 451 500 ENSTTRP00000002310/1-966 LGPSVFDVFR QYASLTGTQV LPPLFSLGYH QSRWNYRDEA DVLEVDQGFD ENSP00000340466/1-966 LGPSISDVFR QYASLTGTQA LPPLFSLGYH QSRWNYRDEA DVLEVDQGFD ENSBTAP00000022558/1-966 LGPSVFDVFR QYASLTGTQA LPPLFSLGYH QSRWNYRDEA DVLEVDQGFD bmy_19283T0/1-1009 LGPSVFDVFR QYASLTGTQV LPPLFSLGYH QSRWNYRDEA DVLEVDQGFD BACU005372/1-976 LGPSVFDVFR QYAGLTGTQV LPPLFSLGYH QSRWNYRDEA DVLEVDQGFD 501 550 ENSTTRP00000002310/1-966 DHNLPCDVIW LDIEHADGKR YFTWDPSRFP QPLTMLEHLA SKRRKLVAIV ENSP00000340466/1-966 DHNLPCDVIW LDIEHADGKR YFTWDPSRFP QPRTMLERLA SKRRKLVAIV ENSBTAP00000022558/1-966 DHNLPCDVIW LDIEHADGKR YFTWDPSRFP QPRNMLEHLA SKRRKLVAIV bmy_19283T0/1-1009 DHNLPCDVIW LDIEHADGKR YFTWDPSRFP QPLTMLEHLA SKRRKLVAIV BACU005372/1-976 DHNLPCDVIW LDIEHADGKR YFTWDPSRFP QPLTMLEHLA SKRRKLVAIV 551 600 ENSTTRP00000002310/1-966 DPHIKVDSGY RVHEELQNLG LYVKTRDGSD YEGWCWPGAA GYPDFTNPKM ENSP00000340466/1-966 DPHIKVDSGY RVHEELRNLG LYVKTRDGSD YEGWCWPGSA GYPDFTNPTM ENSBTAP00000022558/1-966 DPHIKVDSGY RVHEELQNLG LYVKTRDGSD YEGWCWPGAA GYPDFTNPKM bmy_19283T0/1-1009 DPHIKVDSGY RVHEELQNLG LYVKTRDGSD YEGWCWPGAA GYPDFTNPKM BACU005372/1-976 DPHIKVDSGY RVHEELQNLG LYVKTRDGSD YEGWCWPGAA GYPDFTNPKM 601 650 ENSTTRP00000002310/1-966 RAWWANMFRF DNYEGSSPNL YVWNDMNEPS VFNGPEVTML KDAQHYGGWE ENSP00000340466/1-966 RAWWANMFSY DNYEGSAPNL FVWNDMNEPS VFNGPEVTML KDAQHYGGWE ENSBTAP00000022558/1-966 RAWWANMFHF DNYEGSAPNL YVWNDMNEPS VFNGPEVTML KDAQHYGGWE bmy_19283T0/1-1009 RAWWANMFRF DNYEGSSPSL YVWNDMNEPS VFNGPEVTML KDAQHYGGWE BACU005372/1-976 RAWWANMFRF DNYEGSSPSL YVWNDMNEPS VFNGPEVTML KDAQHYGGWE 651 700 ENSTTRP00000002310/1-966 HRDVHNIYGF YVHMATADGL VLRSGGIERP FVLSRAFFAG SQRFGAVWTG ENSP00000340466/1-966 HRDVHNIYGL YVHMATADGL RQRSGGMERP FVLARAFFAG SQRFGAVWTG ENSBTAP00000022558/1-966 HRDVHNIYGL YVHMATADGL VLRSGGIERP FVLSRAFFAG SQRFGAVWTG bmy_19283T0/1-1009 HRDVHNIYGL YVHMATADGL VLRSGGTERP FVLSRAFFAG SQRFGAVWTG BACU005372/1-976 HRDVHNIYGL YVHMATADGL VLRSGGIERP FVLSRAFFAG SQRFGAVWTG 701 750 ENSTTRP00000002310/1-966 DNAAEWDHLK ISIPMCLSLG LVGLSFCGAD VGGFFKNPEP ELLVRWYQMG ENSP00000340466/1-966 DNTAEWDHLK ISIPMCLSLG LVGLSFCGAD VGGFFKNPEP ELLVRWYQMG ENSBTAP00000022558/1-966 DNAAEWDHMK ISIPMCLSLG LVGLSFCGAD VGGFFKNPEP ELLVRWYQMG bmy_19283T0/1-1009 DNAAEWDHLK ISIPMCLSLG LVGLSFCGAD VGGFFKNPEP ELLVRWYQMG BACU005372/1-976 DNAAEWDHLK ISIPMCLSLG LVGLSFCGAD VGGFFKNPEP ELLVRWYQMG 751 800 ENSTTRP00000002310/1-966 AYQPFFRAHA HLDTGRREPW LLPSQYHDII RDALGQRYSL LPFWYTLFYQ ENSP00000340466/1-966 AYQPFFRAHA HLDTGRREPW LLPSQHNDII RDALGQRYSL LPFWYTLLYQ ENSBTAP00000022558/1-966 AYQPFFRAHA HLDTGRREPW LLPSQYHEII RDALGQRYSL LPFWYTLFYQ bmy_19283T0/1-1009 AYQPFFRAHA HLDTGRREPW LLPSQYHDII RDALGQRYSL LPFWYTLFYQ BACU005372/1-976 AYQPFFRAHA HLDTGRREPW LLPSQYHDII RDALGQRYSL LPFWYTLFYQ 801 850 ENSTTRP00000002310/1-966 AHREGIPIMR PLWVHYPQDV TTFSIDDQFL LGDALLVHPV SDSEAHGVQV ENSP00000340466/1-966 AHREGIPVMR PLWVQYPQDV TTFNIDDQYL LGDALLVHPV SDSGAHGVQV ENSBTAP00000022558/1-966 SHREGIPVMR PLWVHYPKDV TTFSIDDQFL LGDALLVHPV SDSEARGVQV bmy_19283T0/1-1009 AHREGIPIMR PLWVHYPQDV TTFSIDDQFL LGDALLVHPV SDSEAHGVQV BACU005372/1-976 AHREGIPIMR PLWVHYPQDV TTFSIDDQFL LG-------- ---EKQG--- 851 900 ENSTTRP00000002310/1-966 YLPGQGEVWY DVHSYQKHHG PQTLYLPVTL SSIPVFQRGG TIVPRWMRVR ENSP00000340466/1-966 YLPGQGEVWY DIQSYQKHHG PQTLYLPVTL SSIPVFQRGG TIVPRWMRVR ENSBTAP00000022558/1-966 YLPGQGEVWY DVQSYQKYHG PQTLYLPVTL SSIPVFQRGG TIVPRWMRVR bmy_19283T0/1-1009 YLPGQGEVWY DVHSYQKHHG PQTLYLPVTL SSIPVFQRGG TIVPRWMRVR BACU005372/1-976 ---GQLVVWY DVHSYQKHHG PQTLYLPVTL SSIPVFQRGG TIVPRWMRVR 901 950 ENSTTRP00000002310/1-966 RSSDCMKDDP ITLFVALSLQ GTAQGELFLD DGHTFNYQTR HEFLLRRFSF ENSP00000340466/1-966 RSSECMKDDP ITLFVALSPQ GTAQGELFLD DGHTFNYQTR QEFLLRRFSF ENSBTAP00000022558/1-966 RSSDCMKDDP ITLFVALSLQ GTAQGELFLD DGHTFNYQTR HEFLLRRFSF bmy_19283T0/1-1009 RSSDCMKDDP ITLFVALSLQ GTAQGELFLD DGHTFNYQTR HEFLLRRFSF BACU005372/1-976 RSSDCMKDDP ITLYVALSLQ GTAQGELFLD DGHTFNYQTR HEFLLRRFSF 951 1000 ENSTTRP00000002310/1-966 SGNTLVSSSA DPKGHFETPI WIERVVIIGA GKPATVVLQT KGSPESRLSF ENSP00000340466/1-966 SGNTLVSSSA DPEGHFETPI WIERVVIIGA GKPAAVVLQT KGSPESRLSF ENSBTAP00000022558/1-966 SGNTLVSSSA DPKGHFETPI WIERVVIIGA GKPATVVLQT KGSPESRLSF bmy_19283T0/1-1009 SGNTLVSSSA DPKGHFETPI WIERVVIIGA GKPATVVLQT KGSPESRLSF BACU005372/1-976 SGNTLVSSSA DPKGHFETPI WIERVVIIGA GKPATVVLQT KGSPESRLSF 1001 1050 ENSTTRP00000002310/1-966 QHDPETSVLI LRKPGVSVVS DWSIHLR ENSP00000340466/1-966 QHDPETSVLV LRKPGINVAS DWSIHLR ENSBTAP00000022558/1-966 QHDPETSVLI LRKPGVNVAS DWTIHLR bmy_19283T0/1-1009 QHDPETSVLI LRKPGVSVVS DWSIHLR BACU005372/1-976 QHDPETSVLI LRKPGVSVVS DWSIHLR