KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:44 2014 Check: 00 .. Name: ENSP00000358549/1-578 Len: 705 Check: 4654 Weight: 1.00 Name: ENSTTRP00000008471/1-550 Len: 705 Check: 3474 Weight: 1.00 Name: ENSBTAP00000022568/1-578 Len: 705 Check: 6105 Weight: 1.00 Name: bmy_17872T0/1-661 Len: 705 Check: 1518 Weight: 1.00 Name: BACU019512/1-501 Len: 705 Check: 4414 Weight: 1.00 // 1 50 ENSP00000358549/1-578 MACGFRRAIA CQLSRVLNLP PENLITSISA VPISQKEEVA DFQLSVDSLL ENSTTRP00000008471/1-550 MACGFRRSIA CQLSRVLDLP PEYLIKSISA VPISRKEEVA DFQLSVDSLL ENSBTAP00000022568/1-578 MACGFRRSIA SQLSRVLDLP PENLIKSISA VPISRKEEVA DFQLSVDSLL bmy_17872T0/1-661 ---------- ---------- ---------- --MSVFREVA DFQLSVDSLL BACU019512/1-501 ---------- ---------- ---------- VSMSVFREVA DFQLSVDSLL 51 100 ENSP00000358549/1-578 EKDNDHSRPD IQVQAKRLAE KLRCDTVVSE ISTGQRTVNF KINRELLTKT ENSTTRP00000008471/1-550 ENNNDHSRPD IQLQTVRLAE KLKCDTVVSE ISTGPGTVNF KINRELLTKT ENSBTAP00000022568/1-578 ENNNDHSRPD IQIQAMRLAE KLKCDTVVSE ISTGQGTVNF KINRELLTKT bmy_17872T0/1-661 EHNNGHSRPD IQLQAMRLAE KLKCDTVVSE ISTGPGT--- ---------T BACU019512/1-501 EHNNGHSRPD IQLQAMRLAE KLKCDTVVSE ISTGPGTVNF KINRELLTKT 101 150 ENSP00000358549/1-578 VLQQVIEDGS KYGLKSELFS GLPQKKIVVE FSSPNVAKKF HVGHLRSTII ENSTTRP00000008471/1-550 VLQEVIEDGS KYGLKSELFS GLPQKKIVVE FSSPNVAKKF HVGHLRSTII ENSBTAP00000022568/1-578 VLQQVIEDGS KYGLKSELFS GLPKKRIVVE FSSPNVAKKF HVGHLRSTII bmy_17872T0/1-661 VLQEVIEDGS KYGLKSELFS GLPQKKIVVE FSSPNVAKKF HVGHLRSTII BACU019512/1-501 VLQEVIEDGS KYGLKSELFS GLPQKKIVVE FSSPNVAKKF HVGHLRSTII 151 200 ENSP00000358549/1-578 GNFIANLKEA LGHQVIRINY LGDWGMQFGL LGTGFQLFGY EEKLQSNPLQ ENSTTRP00000008471/1-550 GNFIANLKEA LGHQVTRINY LGDWGMQFGL LGTGFQLFGY EEKLQSNPLQ ENSBTAP00000022568/1-578 GNFIANLKEA LGHQVTRINY LGDWGMQFGL LGTGFQLFGY EEKLQSSPLQ bmy_17872T0/1-661 GNFIANLKEA LGHQVTRINY LGDWGMQFGL LGTGFQLFGY EEKLQSNPLQ BACU019512/1-501 GNFIANLKEA LGHQVTRINY LGDWGMQFGL LGTGFQLFGY EEKLQSNPLQ 201 250 ENSP00000358549/1-578 HLFEVYVQVN KEAADDKSVA KAAQEFFQRL ELGDVQALSL WQKFRDLSIE ENSTTRP00000008471/1-550 HLFEVYVQVN KEAADDKSVA KSAHEFFQRL ELGDTQALAL WQKFRDLSIE ENSBTAP00000022568/1-578 HLFEVYVQVN KEAADDKNVA KSAHEFFQRL ELGDMQALAL WQKFRDLSID bmy_17872T0/1-661 HLFEVYVQVN KEAADDKNVA KSAHEFFQRL ELGDTQALAL WQKFRDLSIE BACU019512/1-501 HLFEVYVQVN KEAADDKNVA KSAHEFFQRL ELGDTQALAL WQKFRDLSIE 251 300 ENSP00000358549/1-578 EYIRVYKRLG VYFDEYSGES FYREKSQEVL KLLESKGLLL KTI------- ENSTTRP00000008471/1-550 EYIRIYKRLG VHFDEYSGES FYREKSQEVL KLLDSKGLLQ KTI------- ENSBTAP00000022568/1-578 EYMRIYQRLG VHFDEYSGES FYREKSQEVL KLLDSKGLLQ KTL------- bmy_17872T0/1-661 EYIRIYKRLG VHFDEYSGES FYREKSQEVL KLLDSKGLLQ KTMYDQVTIL BACU019512/1-501 EYIRIYKRLG VHFDDYSGES FYREKSQEVL KLLDSKGLLQ KTI------- 301 350 ENSP00000358549/1-578 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008471/1-550 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022568/1-578 ---------- ---------- ---------- ---------- ---------- bmy_17872T0/1-661 EKVIHSALKG PPSHLQQNYR NSESGEKTEG SESAPEGQAR QRRPYCRRRR BACU019512/1-501 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000358549/1-578 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008471/1-550 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022568/1-578 ---------- ---------- ---------- ---------- ---------- bmy_17872T0/1-661 PPYCVRRANG RRPQRSTLLC GERGPPRQRQ RREDGSEEDK ENQGDETQEL BACU019512/1-501 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000358549/1-578 ------KGTA VVDLSGNGDP SSICTVMRSD GTSLYATRDL AAAIDRMDKY ENSTTRP00000008471/1-550 ------KGTA VVDLSGSGDP SSICTVMRSD GTSLYATRDL AAAIDRMDKY ENSBTAP00000022568/1-578 ------KGTA VVDLSGNGDP SSVCTVMRSD GTSLYATRDL AAAIDRMEKY bmy_17872T0/1-661 PFCISRKGTA VVDLSGNGDP SSICTVMRSD GTSLYATRDL AAAIDRMDKY BACU019512/1-501 ------KGTA VVDLSGNGDP SSICTVMRSD GTSLYATRDL AAAIDRMDKY 451 500 ENSP00000358549/1-578 NFDTMIYVTD KGQKKHFQQV FQMLKIMGYD WAERCQHVPF GVVQGMKTRR ENSTTRP00000008471/1-550 NFDKMIYVTD KGQKKHFQQV FQMLQIMGYD WAERCQHVPF GVVQGMKTRR ENSBTAP00000022568/1-578 NFDKMIYVTD KGQKKHFQQV FQILQIMGYD WAERCQHVPF GVVQGMKTRR bmy_17872T0/1-661 NFDKMIYVTD KGQKKHFQQV FQMLQTMGYD WAERCQHVPF GVVQGMKTRR BACU019512/1-501 NFDKMIYVTD KGQKKHFQQV FQMLQIMGYD WAERCQHVPF GVVQGMKTRR 501 550 ENSP00000358549/1-578 GDVTFLEDVL NEIQLRMLQN MASIKTTKEL KNPQETAERV GLAALIIQDF ENSTTRP00000008471/1-550 GDVTFLEDVL NEIRLRMLQN MASAKTTREL ENPQETAERV GLAALIIQDF ENSBTAP00000022568/1-578 GDVTFLEDVL NEIRLRMLQN MASIKTTKEL ENPEETAEQV GLAALIIQDF bmy_17872T0/1-661 GDVTFLEDVL NEIRLRMLQN MASIKTTREL ENPQETAERV GLAALIIQDF BACU019512/1-501 GDVTFLEDVL NEIRLRMLQN MASIKTTREL ENPQETAERV GLAALIIQDF 551 600 ENSP00000358549/1-578 KGLLLSDYKF SWDRVFQSRG DTGVFLQYTH ARLHSLEETF GCGYLNDFNT ENSTTRP00000008471/1-550 RGFLLSDYQF SWDRVFQSRG DTGVFLQYTH ARLHXXXXXX XXXXXXXXXT ENSBTAP00000022568/1-578 RGFLLSDYQF SWDRVFQSRG DTGVFLQYTH ARLHSLEETF GCGYLNDFNT bmy_17872T0/1-661 RGFLLSDYQF SWDRVFQSRG DTGVFLQYTH ARLHSLEETF GCGYLNDFNT BACU019512/1-501 RGFLLSDYQF SWDRVFQSRG DTGVFLQYTH ARLHSLEETF GCGYLNDFNT 601 650 ENSP00000358549/1-578 ACLQEPQSVS ILQHLLRFDE VLYKSSQDFQ PRHIVSYLLT LSHLAAVAHK ENSTTRP00000008471/1-550 ACLQEPQSVS ILQHLLRFDE VLYRSAQDLQ PRHIVSYLLT LSHLAAMAHK ENSBTAP00000022568/1-578 ACLQEPQSVS ILQHLLRFDE VLYRSSQDLQ PRHIVSYLLT LSHLAAVAHR bmy_17872T0/1-661 ACLQEPQSVS ILQHLLRFDE VLYRSAQDLQ PRHIVSYLLT LSHLAAVAHK BACU019512/1-501 ACLQEPQSVS ILQHLLRFDE VLYRSAQDLQ PRHIVSYLLT LRYV------ 651 700 ENSP00000358549/1-578 TLQIKDSPPE VAG------- -------ARL HLFKAVRSVL ANGMKLLGIT ENSTTRP00000008471/1-550 TLHIKNSPPE VAG------- ---------- ---------- ---------- ENSBTAP00000022568/1-578 TLHVRNSPPE VAG------- -------ARL HLFRAVRSVL ANGMKLLGIT bmy_17872T0/1-661 TLHIKSSPPE VAGHPVVQLQ QCTYTLKARL HLFRAVRSVL ANGMKLLGIT BACU019512/1-501 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000358549/1-578 PVCRM ENSTTRP00000008471/1-550 ----- ENSBTAP00000022568/1-578 PVCRM bmy_17872T0/1-661 PVCRM BACU019512/1-501 -----