KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:44 2014 Check: 00 .. Name: bmy_17873T0/1-690 Len: 768 Check: 3466 Weight: 1.00 Name: ENSP00000257789/1-712 Len: 768 Check: 1698 Weight: 1.00 Name: ENSBTAP00000022571/1-712 Len: 768 Check: 1410 Weight: 1.00 Name: BACU016924/1-714 Len: 768 Check: 9725 Weight: 1.00 Name: ENSTTRP00000008472/1-714 Len: 768 Check: 7760 Weight: 1.00 // 1 50 bmy_17873T0/1-690 MATSSVSKGC FVFKPNFKKR KISVPIEDYF NKGKNESEDS TLRFETYQLI ENSP00000257789/1-712 MATSSMSKGC FVFKPNSKKR KISLPIEDYF NKGKNEPEDS KLRFETYQLI ENSBTAP00000022571/1-712 MATSSVSKGC FVFKPNFKKR KISVPIEDYF NKGKNASEDS KLRFETYQLI BACU016924/1-714 MATSSVSKGC FVFKPNFKKR KISVPIEDYF NKGKNESEDS KLRFETYQLI ENSTTRP00000008472/1-714 MATSSVSKGC FVFKPDFKKR KISVPIEDYF NKGKNESEDS KLRFETYQLI 51 100 bmy_17873T0/1-690 WQQMKSETER LQEELNKNLF DSLIEFLQKS HSGFQXNSRD WGCQIKLREI ENSP00000257789/1-712 WQQMKSENER LQEELNKNLF DNLIEFLQKS HSGFQKNSRD LGGQIKLREI ENSBTAP00000022571/1-712 WQQMKSETER LQEELNKNLF DSLVEFLQTS HSGLWKNSKD WSCEIKLREI BACU016924/1-714 WQQMKSETER LQEELNKNLF DSLIEFLQKS HSGFQKNSRD WGCQIKLREI ENSTTRP00000008472/1-714 WQQMKSETER LQEELNKNLF DSLIEFLQKS HSGFQKNSRD WGCQIKLREI 101 150 bmy_17873T0/1-690 PTAALVLGVN VTDHDLTFRS LTEVLQNNVT PYETFFAKAG LTVDGLQCRR ENSP00000257789/1-712 PTAALVLGVN VTDHDLTFGS LTEALQNNVT PY-------- --VVSLQAK- ENSBTAP00000022571/1-712 PTAALVLGVN VTDHDLTLRS LTEVLQNNVT PY-------- --VVSLQAK- BACU016924/1-714 PTAALVLGVN VTDHDLTFRS LTEVLQNNVT PY-------- --VVSLQAK- ENSTTRP00000008472/1-714 PTAALVLXXX XXXXXXXXXX XXXXXXXXXX XX-------- --XXXXXXX- 151 200 bmy_17873T0/1-690 PIQRERKCSG HPEKDTLFNG FSFHLVYECH TDMKHFLQKL ASQLMDCNVD ENSP00000257789/1-712 ---------- ---------- -------DC- PDMKHFLQKL ISQLMDCCVD ENSBTAP00000022571/1-712 ---------- ---------- -------DC- PDMKHFLQKL VSQLMDCKVD BACU016924/1-714 ---------- ---------- -------DC- PDMKHFLQKL ASQLMDCNVD ENSTTRP00000008472/1-714 ---------- ---------- -------XX- XXMKHFLQKL ASQLMDCNVD 201 250 bmy_17873T0/1-690 VQSKEKESVQ VTQKKIHYSM DSLSTWYMNV TQKTDPKIPR KKRTPSSQWQ ENSP00000257789/1-712 IKSKEEESVH VTQRKTHYSM DSLSSWYMTV TQKTDPKMLS KKRTTSSQWQ ENSBTAP00000022571/1-712 VQSKEKESVQ VIQKNVHYSM DSLSAWYMSV TQKTDPKMPR KKRTSSSQWQ BACU016924/1-714 VQSKEKESVQ VTQKKIHYSM DSLSTWYMNV TQKTDPKIPR KKRTPSSQWQ ENSTTRP00000008472/1-714 VQSKEKESVQ VTQKKIHYSM DSLSTWYMSV TQKTDVKMPR KKRTPPSQWQ 251 300 bmy_17873T0/1-690 SPPVVLILKD MESFTTKVLQ DFIIISSQHL HEFPLILIFG IATSPIVVHR ENSP00000257789/1-712 SPPVVVILKD MESFATKVLQ DFIIISSQHL HEFPLILIFG IATSPIIIHR ENSBTAP00000022571/1-712 SPPVVLILKD MESFTTKVLQ DFIIISSQHL HEFPLILIFG IATSPVVIHR BACU016924/1-714 SPPVVLILKD MESFTTKVLQ DFIIISSQHL HEFPLILIFG IATSPIVIHR ENSTTRP00000008472/1-714 SPPVVLILKD MESFTTKVLQ DFIIISSQHL HEFPLILIFG IATSPVVVHR 301 350 bmy_17873T0/1-690 LLPHAVSSLL CIELFQSLSC KEHLTTVLDK LLLTTQFPFK LSEKVLQVLT ENSP00000257789/1-712 LLPHAVSSLL CIELFQSLSC KEHLTTVLDK LLLTTQFPFK INEKVLQVLT ENSBTAP00000022571/1-712 LLPHAVSSLL CIELFQSLSC KEHLTTVLDK LLLTTQFPFK LSEKVLQILT BACU016924/1-714 LLPHAVSSLL CIELFQSLSC KEHLTTVLDK LLLTAQFPFK LSEKVLQVLT ENSTTRP00000008472/1-714 MLPHAVSSLL CIELFQSLSC KEHLTTVLDK LLLTTQFPFK LSEKVLQVLT 351 400 bmy_17873T0/1-690 NIFLYHDFSI QNFIKGLKLS LLEHFYSQPL SVLCCNLPEA KRRINFLSDN ENSP00000257789/1-712 NIFLYHDFSV QNFIKGLQLS LLEHFYSQPL SVLCCNLPEA KRRINFLSNN ENSBTAP00000022571/1-712 NIFLYHDFSI QNFIKGLQLS LLEHFYSQPL SVLCCNLPEA KRRIRFLSAN BACU016924/1-714 NIFLYHDFSI QNFIKGLQLS LLEHFYSQPL SVLCCNLPEA KRRINFLSDN ENSTTRP00000008472/1-714 NIFLYHDFSI QNFIKGLQLS LLEHFYSQPL SVLCCNLPEA KRRINFLSDN 401 450 bmy_17873T0/1-690 QCENIRRLPS FRRYVEKQAS EKQVALLTNE RFLKSSIESL QTLIQVISVE ENSP00000257789/1-712 QCENIRRLPS FRRYVEKQAS EKQVALLTNE RYLKEETQLL LENLHV---- ENSBTAP00000022571/1-712 QCENIRRLPS FRRYVEKQSS EKQVALLTSD KFLKEETQSL LENLHV---- BACU016924/1-714 QCENIRRLPS FRRYVEKQAS EKQVALLTNE RFLKEETQSL LENLHV---- ENSTTRP00000008472/1-714 QCENIRRLPS FRRYVEKQAS EKQVALLTNE RFLKEETQSL LENLHV---- 451 500 bmy_17873T0/1-690 KKLKNHFVLK YMIIL-CNQR AEGR------ GKSIRK---- -NNKRKREGK ENSP00000257789/1-712 ------YHMN YFLVLRCLHK FTSSLPKYPL GRQIRELYCT CLEKNIWDSE ENSBTAP00000022571/1-712 ------YHKN YFLVLRCLHQ FTSSLPKYPL GRQIRELYCM CLEKSIWDSE BACU016924/1-714 ------YHTN YFLVLRCLHQ FTSSLPKYPL GRQIRELYCT CLEKNILDSE ENSTTRP00000008472/1-714 ------YHTN YFLVLRCLHQ FTSSLPKYPL GRQIRELYCT CLEKNIRDSE 501 550 bmy_17873T0/1-690 KKTTANKLPN K--------- ----FSHFYI LSCNLLEITL HPMHTIL-DM ENSP00000257789/1-712 EYASVLQLLR MLAKDELMTI LEKCFKVFKS YCENHLGSTA KRIEEFLAQF ENSBTAP00000022571/1-712 EYASVLQLLR LLAKDELMAM LQNCFKLFQS SSGKELGNTA KRIEEFLAQF BACU016924/1-714 EYASALQLLR MLAKDELMAT LQKCFKVFKS SSEKQLGNTA KRIEEFLAQF ENSTTRP00000008472/1-714 EYASALQLLR MLAKDELMAM LQKCFKVFKS SSEKQLGNTA KRIEEFLAQF 551 600 bmy_17873T0/1-690 KVINTVEIRE INAETKHHGK CNSTRFLYLY IYLSFTQSLA SPKKIGKVTK ENSP00000257789/1-712 QSLDA-ETKE EEDASGSQPK GLQKTDLY-- ---HLQKSLL EMKELRR-SK ENSBTAP00000022571/1-712 QSLD--ETKE EEDTSQSQSK GLQKTDLY-- ---HLQKSLL EMKELRSTSK BACU016924/1-714 QSLDAEAKEE EEDTSESQSK GLQKTDLY-- ---HLQKSLL EMKELRRTSK ENSTTRP00000008472/1-714 QSLDAEAKEE EEDTSESQSK GLQKTDLY-- ---HLQKSLL EMKELRRASK 601 650 bmy_17873T0/1-690 PVLEIPSKKQ ---GFTPAEE TQSLL--ENL HVYHTNYFLV LRCLHQFTSS ENSP00000257789/1-712 KQTKFEVLRE NVVNFIDCLV REYLLPPETQ PLHEVVYFSA AHALREHLNA ENSBTAP00000022571/1-712 RQTKFEVLRE QVVSFVDSLV REYLLPPDTQ PLHETLYFSS AHTLRQHLNA BACU016924/1-714 RQTKFEVLRE QLVSFIDSLV REYLLLPETQ PLHEVLYFSA AHTLRQHLNA ENSTTRP00000008472/1-714 RQTKFEVLRE QLVSFIDSLA REYLLLPETQ PLHEVLYFSA AHTLRQHLNA 651 700 bmy_17873T0/1-690 LPKYPLGRQV TRTYSF---- ------GI-- ---------Y EVGI------ ENSP00000257789/1-712 APRIALHTAL NNPYYYLKNE ALKSEEGCIP NIAPDICIAY KLHLECSRLI ENSBTAP00000022571/1-712 APRIALHTAL NNPYYYLKNE ALRSEEGCIP NVAPDICIAY KLHLECSRLI BACU016924/1-714 APRIALHTAL NNPYYYLKNE ALRSEEGCIP NVAPDICIAY KLHLECSRLI ENSTTRP00000008472/1-714 APRIALHTAL NNPYYYLKNE ALRSEEGCIP NVAPDICIAY KLHLECSRLI 701 750 bmy_17873T0/1-690 -LVVFCFEFG SIQASEFEMD PNLAKVAVFN NIIF------ -FDLTIYDFS ENSP00000257789/1-712 NLVDWSEAFA TVVTAAEKMD ANSATSEEMN EIIHARFIRA VSELELLGFI ENSBTAP00000022571/1-712 NLVDWSEAFA TVVTAAEKMD ANSVTSEERN EIIHARFIRA VSELELLGFI BACU016924/1-714 NLVDWSEAFA TVVTAAEKMD ANSVTSEERN EIIHARFIRA VSELELLGFI ENSTTRP00000008472/1-714 NLVDWSEAFA TVVTAAEKMD ANSVTSEERN EIIHARFIRA VSELELLGFI 751 800 bmy_17873T0/1-690 KRSVQT---- -------- ENSP00000257789/1-712 KPTKQKTDHV ARLTWGGC ENSBTAP00000022571/1-712 KPTKQKTDHV ARLTWGGC BACU016924/1-714 KPTKQKTDHV ARLTWGGC ENSTTRP00000008472/1-714 KPTKQKTDHV ARLTWGGC