KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:47 2014 Check: 00 .. Name: ENSP00000295148/1-721 Len: 728 Check: 763 Weight: 1.00 Name: ENSBTAP00000022591/1-674 Len: 728 Check: 2464 Weight: 1.00 Name: ENSTTRP00000012739/1-700 Len: 728 Check: 8390 Weight: 1.00 Name: bmy_05489T0/1-677 Len: 728 Check: 6272 Weight: 1.00 Name: BACU010232/1-682 Len: 728 Check: 6701 Weight: 1.00 // 1 50 ENSP00000295148/1-721 MELGKGKLLR TGLNALHQAV HPIHGLAWTD GNQVVLTDLR LHSGEVKFGD ENSBTAP00000022591/1-674 MELGQGKLLR TGLNALYQAI HPIHGLAWTD GTQVVLTNLQ LHSGEAKFGD ENSTTRP00000012739/1-700 MELGRGKLLR TGLNALYQAI HPIHGLAWTD GNQVVLTDLH LHGGEAKFGD bmy_05489T0/1-677 MELGKGKLLR TGLNALYQAI HPIHGLAWTD GNQVVLTDLH LHGGEARFGD BACU010232/1-682 MELGKGKLLR TGLNALYQAI HPIHGLAWTD GNQVVLTDLH LHGGEARFGD 51 100 ENSP00000295148/1-721 SKVIGQFECV CGLSWAPPVA DDTPVLLAVQ HEKHVTVWQL CPSPMESSKW ENSBTAP00000022591/1-674 STVLGQFEHV YGVSWAPPGA ADTPTLLAVQ HKKCVIVWQL CPSPAETSKW ENSTTRP00000012739/1-700 SAVIGQFEHV YRVSWAPPGT ADTPALLAVQ HKKHVIVWQL CPSTTETSKW bmy_05489T0/1-677 SAVIGQFEHV YGVSWAPSGT ADTPALLAVQ HKKHVVVWQL CPSTTETSKW BACU010232/1-682 SAVIGQFEHV YGVSWAPPGT ADTPALLAVQ HKKHVVVWQL CPSTTETSKW 101 150 ENSP00000295148/1-721 LTSQTCEIRG SLPILPQGCV WHPKCAILTV LTAQDVSIFP NVHSDDSQVK ENSBTAP00000022591/1-674 LMSQPCEIRQ SCPVLPQGCV WHPESAILTV LTAWDVSVFY NIHCDSSQVK ENSTTRP00000012739/1-700 LMSQTCEIRQ SLPVLPQGCV WHPKSAVLTV LTAQDVSVFH NVHWDSSQVK bmy_05489T0/1-677 LMSQTCEIRQ SLPVLPQGCV WHPKSAVLTV LTAQDVSVFH NVHWDSSQVK BACU010232/1-682 LMSQTCEISQ SLPVLPQGCV WHPKSALLTV LTAQDVSVFH NVHWDSSRVK 151 200 ENSP00000295148/1-721 ADINTQGRIH CACWTQDGLR LVVAVGSSLH SYIWDSAQKT LHRCSSCLVF ENSBTAP00000022591/1-674 VDISTEGLIY CACWTQDGQR LVVAAGSSLH SYIWDSAQKT LHRCSLCPIF ENSTTRP00000012739/1-700 VDISTQGLIH CACWTPDGQR LVVAVGSSVH SYIWDSAQKT LHRCSFCPVF bmy_05489T0/1-677 VDISTQGLIH CACWTQDGQR LVVAVGSSVR SYIWDSAQKT LHRCPFCPVF BACU010232/1-682 VDISTQGLIH CACWTQDGQR LVVAVGSSVH SYIWDSAQKT LHRCSFCPVF 201 250 ENSP00000295148/1-721 DVDSHVCSIT ATVDSQVAIA TELPLDKICG LNASETFNIP PNSKDMTPYA ENSBTAP00000022591/1-674 DVDSYVRSIR ATVDSQVAIA TELPLDKICG LNASGTFDIP PSGEDTCLHA ENSTTRP00000012739/1-700 DVASYVRSIG ATVDSQVAIA TELPLDKICG LNASGTFDVP PSSEGTCLYT bmy_05489T0/1-677 DVDSYVCSIG ATVDSQVAIA TELPLDKICG LNASGTFDVP PSSEGTCLYT BACU010232/1-682 DVDSYVRSIG ATVDSQVAIA TELPLDKICG LNASGTFDVP PSSEGTCLYT 251 300 ENSP00000295148/1-721 LPVIGEVRSM DKEATDSETN SEVSV---SS SYLEPLDLTH IHFNQHKSEG ENSBTAP00000022591/1-674 LPVTDRV--- -----SSETN SETPV---SS SYSEPLDLTH IHFNRFKSEG ENSTTRP00000012739/1-700 LPVIDEV--- -----SSETN SETPVSPFSS SFSDPLDLTH IHFDGSKSEA bmy_05489T0/1-677 LPVIDEV--- -----SSETN SETPVSPFSS PFSDPLDLTH IHFDRSKSEA BACU010232/1-682 LPVIDKV--- -----SSETS SETPVSPFSS SFSDPLDLTH IHFDRSKSEA 301 350 ENSP00000295148/1-721 NSLICLRKKD YLTGTGQDSS HLVLVTFKKA VTMTRKVTIP GILVPDLIAF ENSBTAP00000022591/1-674 SSLTCLRKKD YLTGTGLDSS HLVLLTFEKE VTCNRKVIIP GILVPDLIAF ENSTTRP00000012739/1-700 SSLICLRKKD YLTGTGLDSS HLVLLTFEKE VTQNRKVTIP GILVPDLMAF bmy_05489T0/1-677 SSLICLRKKD YLTGTDLDSS HLVLLTFEKE VTQKRKVTIP GILVPDLIAF BACU010232/1-682 SSLICLRKKD YLTGTGLDSS HLVLLTFEKE VTQKRKVTIP GILVPDLIAF 351 400 ENSP00000295148/1-721 NLKAHVVAVA SNTCNIILIY SVIPSSVPNI QQIRLENTER PKGICFLTDQ ENSBTAP00000022591/1-674 NFKAQAVAVA SNTSNVIFIY SVIPLLMPNI QQIQLESNER PKGICFLTDK ENSTTRP00000012739/1-700 NLKAQVVAVA SNTCNIIFIY SVVPSFMPNI QQIQLESNER PKGICFLTDK bmy_05489T0/1-677 NLKAQVVAVA SNTCNIIFIY SVIPSFMPNI QQIQLESNER PKGISFLTDK BACU010232/1-682 NLKAQVVAVA SNTCNIIFIY SVIPSFMPNI QQIQLESNER PKGISFLTDK 401 450 ENSP00000295148/1-721 LLLILVGKQK LTDTTFLPSS KSDQYAISLI VREIMLEEEP SITSGESQTT ENSBTAP00000022591/1-674 LLLILVGRQK SMDSAFLPSS KSDQYMIRLI VREVMLKEDS PVTLSENQSG ENSTTRP00000012739/1-700 LLLILIGKQK STDSAFLLSS KSDQYMIRLI VREVMLEEGS PVTPSENQSG bmy_05489T0/1-677 LLLILIGKQK STDSAFLLSS KSDQYMIRLI VREVMLEEDS PMTLSENQSG BACU010232/1-682 LLLILIGKQK SSDSAFLLSS KSDQYMIRLI VREVMLEEDS PMTLNENQSG 451 500 ENSP00000295148/1-721 YSTFSAPLNK ANRKKLIESL SPDFCHQNKG LLLTVNTSSQ NGRPGRTLIK ENSBTAP00000022591/1-674 NSAFSTLINK TNIKKLIEDL SPDFCHQSTG LLFTANSSSQ SGQPGRTLIK ENSTTRP00000012739/1-700 HSAFSTLLNK ANRKKLIESL SPDFCHQNGG ILLTANSSSQ SGRPGRTLIQ bmy_05489T0/1-677 YSAFSTLLNK ANRKKLIESL SPDFCHQNGG LLLTANSSSQ SGRPGRTLIQ BACU010232/1-682 YSAFSTLLNK ANRKNLIESL SPDFCHQNGG LLLTANSTSQ SGRPGRTLIQ 501 550 ENSP00000295148/1-721 EIQSPLSSIC DGSIA---LD AEPVTQPASL PRHSSTPDHT STLEPPRLPQ ENSBTAP00000022591/1-674 EIESPASSIC DGSTFLETLD ARPVNLSVTP PRPSGTPAHT STAEPP---- ENSTTRP00000012739/1-700 EIRSPPSSIC DGSTALETLD AGPVNQSVTL PGPSGTPDHN STAGPP---- bmy_05489T0/1-677 EIKSPPSSIC DGSTALETLD AGPVNQSVTL PGPSGTPDHT STTGPP---- BACU010232/1-682 EIKSPPSSIC DGSTALETLD AGPVNQSVTL PGPSGTPDHT STAGPP---- 551 600 ENSP00000295148/1-721 RKNLQSEKET YQLSKEVEIL SRNLVEMQRC LSELTNRLHN GKKSSSVYPL ENSBTAP00000022591/1-674 --NLEREKET YQLSKELEVV SRNLSEVQRH LSELSDFLHN GRKSSPVYPL ENSTTRP00000012739/1-700 --NLQVENEN YQLSKILEIL SRNLIEVQQR LSELTDFLHN GKKSSPVYPL bmy_05489T0/1-677 --NLQVEKET YQLSKILEIL SRNLTEVQRR LSELSDFLRN GKKSSPVYPL BACU010232/1-682 --NLQVEKET YQLSQILEIL SRNLTEVQQH LSELSDFLRN GKKSSPVYPL 601 650 ENSP00000295148/1-721 SQDLPYVHII YQKPYYLGPV VEKRAVLLCD GKLRLSTVQQ TFGLSLIEML ENSBTAP00000022591/1-674 SQDLPYVHIT CQKSHFVHPV VEKRMMLLCN GKLRLSTVQQ TFGLSLVEML ENSTTRP00000012739/1-700 SQNVPYVHIT CQKSYFLGPV VEKRAVLLCN GKLRLSTVQQ TFGLSLIEML bmy_05489T0/1-677 SQDVPYVHIT CQKSYFLGPV VEKRAVLLCN GKLRLSTVQQ TFGLSLIEML BACU010232/1-682 SQDVPYVHIT CQKSYFLGPV VEKRAVLLCN GKLRLSTVQQ TFGLSLIEML 651 700 ENSP00000295148/1-721 HDSHWILLSA DSEGFIPLTF TATQEIIIRD GSLS-RSDVF RDSFSHSPGA ENSBTAP00000022591/1-674 HDSHWILLCA DSEGFVPLTF TATQEIIIRD G----RSDDF RNSAS----- ENSTTRP00000012739/1-700 HXXXXXXXXX XXXXXXXXXX XXHTQEVIRD G----RSNDF RGPSL----- bmy_05489T0/1-677 HDSHWILLCA DSEGFIPLTF TATQEIVIRD G----RSNDF RGPVS----- BACU010232/1-682 HDSHWILLCA DSEGFIPLTF TATQEIVIRD DSHKLQSLQH NEQIS----- 701 750 ENSP00000295148/1-721 VSSLKVFTGL AAPSLDTTGC CNHVDGMA ENSBTAP00000022591/1-674 ---------- ---------- -------- ENSTTRP00000012739/1-700 -----EVFRH AAQSVDATGC SNHFGSIV bmy_05489T0/1-677 ---------- ---------- -------- BACU010232/1-682 -----V---- ---------- --------