KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:17:49 2014 Check: 00 ..
Name: ENSP00000223073/1-759 Len: 794 Check: 6174 Weight: 1.00
Name: ENSBTAP00000022610/1-756 Len: 794 Check: 226 Weight: 1.00
Name: ENSTTRP00000012957/1-757 Len: 794 Check: 9506 Weight: 1.00
Name: bmy_14111T0/1-783 Len: 794 Check: 7720 Weight: 1.00
Name: BACU006820/1-759 Len: 794 Check: 4872 Weight: 1.00
//
1 50
ENSP00000223073/1-759 MAGLTLFVGR LPPSARSEQL EELFSQVGPV KQCFVVTEKG SKACRGFGYV
ENSBTAP00000022610/1-756 MAGLTLFVGR LPPSARSEQL EELFSQVGPV KQCFVVTEKG SKACRGFGYV
ENSTTRP00000012957/1-757 MAGLTLFVGR LPPSARSEQL EELFSQVGPV KQCFVVTEKG SKACRGFGYV
bmy_14111T0/1-783 MAGLTLFVGR LPPSARSEQL EELFSQVGPV KQCFVVTEKG SKACRGFGYV
BACU006820/1-759 MAGLTLFVGR LPPSARSEQL EELFSQVGPV KQCFVVTEKG SKACRGFGYV
51 100
ENSP00000223073/1-759 TFSMLEDVQR ALKEITTFEG CKINVTVAKK KLRNKTKEKG KNENSECPKK
ENSBTAP00000022610/1-756 TFSMVEDVQR ALKEITTFEG CKINVTIAKK KLRNKSKEKG KTENSESPEK
ENSTTRP00000012957/1-757 TFSMLEDVQR ALK-ITTFEG CKITVTVAKK KLRNKSKEKG KTENSKSPKK
bmy_14111T0/1-783 TFSMLEDVQR ALKEITTFEG CKITVTVAKK KLRNKSKEKG KTENSESPKK
BACU006820/1-759 TFSMLEDVQR ALKEITTFEG CKITVTVAKK KLRNKSKEKG KTENSESPKK
101 150
ENSP00000223073/1-759 EPKAKKAKVA DKKARLIIRN LSFKCSEDDL KTVFAQFGAV LEVNIPRKPD
ENSBTAP00000022610/1-756 ELKPKKAKVA DKKARLIIRN LSFKCSEDDL KTVFSQFGTI LEVNIPRKPD
ENSTTRP00000012957/1-757 ELQPKKAKVA DKKARLIIRN LSFKCSEDDL KTVFAQFGAV LEVNIPRKPD
bmy_14111T0/1-783 ELQPKKAKVA DKKARLIIRN LSFKCSEDDL KTVFAQFGAV LEVNIPRKPG
BACU006820/1-759 ELQPKKAKVA DKKARLIIRN LSFKCSEDDL KTVFAQFGAV LEVNIPRKPD
151 200
ENSP00000223073/1-759 -------GKM RGFGFVQFKN LLEAGKALKG MNMKEIKGRT VAVDWAVAKD
ENSBTAP00000022610/1-756 -------GKM RGFAFVQFKN LLEAGKALKG MNMKEIKGRT VAVDWAVAKD
ENSTTRP00000012957/1-757 -------GKM RGFAFVQFKN LLEAGKALKS MNMKEIKGRT VAVDWAVAKD
bmy_14111T0/1-783 TGKPLFYGKM RGFAFVQFKN LLEAGKALKS MNMKEIKGRT VAVDWAVAKD
BACU006820/1-759 -------GKM RGFAFVQFKN LLEAGKALKS MNMKEIKGRT VAVDWAVAKD
201 250
ENSP00000223073/1-759 KYKDTQSVSA I---GEEKSH ESKHQESVKK KGREEEDMEE EENDDDDDDD
ENSBTAP00000022610/1-756 KYKSTQSASI PDYEGEEKRP EPEHQELDQE NGREEEDMEE GENESDYDDD
ENSTTRP00000012957/1-757 KYKNTQSASV A---GEKKRP EPKCQELGQE NGREEEDMEE EENDGGYDDE
bmy_14111T0/1-783 KYKNTQSASV A---GEEKRP EPKCQELGQE NGREEEDVEE EENDGDYDDE
BACU006820/1-759 KYKNTQSASV A---GEEKRP EPKCQELGQQ NGREEEDVEE EENDGAYDDE
251 300
ENSP00000223073/1-759 DEEDGVFDDE DEEEENIESK VTKPVQIQKR AVKRPAPAKS SD--HSEEDS
ENSBTAP00000022610/1-756 ---------- EEEEEDKESK LPKSVQIHKR AVKRPAPAES SDEEHSDDDS
ENSTTRP00000012957/1-757 EDD----EEE EEDEENRESK LTKPVXXXXX XXXXXXXXXX XX--XXXXXX
bmy_14111T0/1-783 EDDE---EED EEEEENKESK LTKSVQIQKR AVKRAAPAES SEEEHSDDNS
BACU006820/1-759 EDDE---EED EEEEENKESK LTKPVHIQKR AVKRAAPAES SEEEHSDDNS
301 350
ENSP00000223073/1-759 DLEESDSIDD GEELAQSDTS TEEQEDKAVQ VS---NKKKR KLPSDVNEGK
ENSBTAP00000022610/1-756 DLEERDSIDG GEDLAQSDTS SEEQEEEDIE VS-KKKRKKR KLPSDVNEGK
ENSTTRP00000012957/1-757 XXXXRDRIDG GEGLGQSDTN TEEQEEEDIQ VS-KKKKKKR KLPSDVNEGK
bmy_14111T0/1-783 DLEERDSTDG GEDLAQSDTN TEEQEEE--- VS--KKKKKR KLPSDVNEGK
BACU006820/1-759 DLEESDSIDG GEDLAQSDTN TEEQEEE--- VSKKKKKKKR KLPSDVNEGK
351 400
ENSP00000223073/1-759 TVFIRNLSFD SEEEELGELL QQFGELKYVR IVLHPDTEHS KGCAFAQFMT
ENSBTAP00000022610/1-756 TVFIRNLSFD SEEEDLGELL QQFGDLKYVR IVLHPDTEHS KGCAFAQFMT
ENSTTRP00000012957/1-757 TVFIRNLSFD SEEEDLGELL QQFGDLKYVR IVLHPDTEHS KGCAFAQFMT
bmy_14111T0/1-783 TVFIRNLSFN SEEEDLGELX QQFGDLKYVR IVLHPDTEHS KGCAFAQFMT
BACU006820/1-759 TVFIRNLSFD SEEEDLGELL QQFGDLKYVR IVLHPDTEHS KGCAFAQFMT
401 450
ENSP00000223073/1-759 QEAAQKCLLA ASPENEAGGL KLDGRQLKVD LAVTRDEAAK LQTTKVKKPT
ENSBTAP00000022610/1-756 QEAAQKCLEA ASPEAEGGGL KLDGRQLKVD LAVTRDEAAK LRTKKVKKPT
ENSTTRP00000012957/1-757 QEAAQKCLEA ASPETESGGL KLDGRQLKVD LAVTRDEAAK LRTKKVKKPT
bmy_14111T0/1-783 QEAAQKCLEA ASPDTESGGL KLDGRQLKVD LAVTRDEAAK LRTKKVKKPT
BACU006820/1-759 QEAAQKCLEA ASPDTESGGL KLDGRQLKVD LAVTRDEAAK LRTKKVKKPT
451 500
ENSP00000223073/1-759 GTRNLYLARE GLIRAGTKAA EGVSAADMAK RERFELLKHQ KLKDQNIFVS
ENSBTAP00000022610/1-756 GTRNLYLARE GLIRAGTKAA EGVSAADMAK RERFELLKHQ KLKDQNIFVS
ENSTTRP00000012957/1-757 GTRNLYLARE GLIRAGTKAA EGVSAADMAK RERFELLKHQ KLKDQNIFVS
bmy_14111T0/1-783 GTRNLYLARE GLIRAGTKAA EGVSAADMAK RERFELLKHQ KLKDQNIFVS
BACU006820/1-759 GTRNLYLARE GLIRAGTKAA EGVSAADMAK RERFELLKHQ KLKDQNIFVS
501 550
ENSP00000223073/1-759 RTRLCLHNLP KAVDDKQLRK LLLSATSGEK GVRIKE---- ----------
ENSBTAP00000022610/1-756 RTRLCLHNLP KAVDDKQLRK LLLNSTRGEK AVRIKE---- ----------
ENSTTRP00000012957/1-757 RTRLCLHNLP KAVDDKQLRK LLLNATRGEK GVRIKE---- ----------
bmy_14111T0/1-783 QTRLCLHNLP KAVDDKRLRK LLLNATGGEK GVRIKEVYSN KTDIHKCYPN
BACU006820/1-759 RTRLCLHNLP KAVDDKRLRK LLLNATGGEK GVRIKE---- ----------
551 600
ENSP00000223073/1-759 -----CRVMR DLKGVHGNMK GQSLGYAFAE FQEHEHALKA LRLINNNPEI
ENSBTAP00000022610/1-756 -----CRVMR DLKGAYGKIK GQSLGYAFAE FQEHEHALAA LRHINNNPEI
ENSTTRP00000012957/1-757 -----CRVMR GLKGAHGKIN GQSLGYAFAE FQEHEHALAA LRHINNNPEI
bmy_14111T0/1-783 KTLVMCRVMR GLKGAHGKIN GQSLGYAFAE FQEHEHALAA LRHINNNPEI
BACU006820/1-759 -----CRVMR GLKGAHGKIN GQSLGYAFAE FQEHEHALAA LRHINNNPEI
601 650
ENSP00000223073/1-759 FGPLKRPIVE FSLEDRRKLK MKELRIQRSL QKMRSKPATG E-PQKGQPEP
ENSBTAP00000022610/1-756 FGPQKRPIVE FSLEDRRKLK VKELRIQRSQ QKVKSKPGTG E-PQQVPPEP
ENSTTRP00000012957/1-757 FGPQKRPIVE FSLEDRRKLK IKELRIQRSL QKVKSMSATG EQPQQEPPEL
bmy_14111T0/1-783 FGPQKRPIVE FSLEDRRKLK IKELRIQRSL QKVKSKSATA EQPQQEQPEL
BACU006820/1-759 FGPQKRPIVE FSLEDRRKLK IKELRIQRSL QKVKPRSATG EQPQQEQPEL
651 700
ENSP00000223073/1-759 AKDQQQKAAQ HHTEEQSKVP PEQKRKAGST SWTGFQTKAE VEQVELPDGK
ENSBTAP00000022610/1-756 GKKQQQKAAQ NHMQEQSQAS VRQKGTADSV SWAGFQTKAE VEHVELPDGK
ENSTTRP00000012957/1-757 GKKQQQKTAQ SHMPQQSKAP VEQKEKAGSV SWTGFQTKAE VEHVELSDGK
bmy_14111T0/1-783 RKKQQQKTAQ NHMHQESKAP VEQEEKAGSV PWTGFQTKAE VERVELSDGK
BACU006820/1-759 GKKQQQKTAQ NHMHQQSKAP TEQEEKAGSV SWTGFQTKAE VEHVELSDGK
701 750
ENSP00000223073/1-759 KRRKVLALPS HRGPKIRLRD KGKVKPVHPK KPKPQINQWK QEKQQLSSEQ
ENSBTAP00000022610/1-756 KRRKVLALPS HRGPKIRLRD KGKMKPLPPK KPKPQTNHQK QEKQKLSSKQ
ENSTTRP00000012957/1-757 KRRKVLVLPS HRGPKIRLRD KGKMKPLPPK KPTPQINHWK QEKQKLSSKQ
bmy_14111T0/1-783 KRRKVLVLPS HRGPKIRLRD KGKMKPLPPK KPNPQINHWK QEKQKLSSKQ
BACU006820/1-759 KRRKVLVLPS HRGPKIRLRD KGKMKPLPPK KANPQINHWK QEKQKLSSKQ
751 800
ENSP00000223073/1-759 VSRKKAKGNK TETRFNQLVE QYKQKLLGPS KGAPLAKRSK WFDS
ENSBTAP00000022610/1-756 VPRKKAKGNK TEVRFNQLVE QYKQKLLGLS KGVPLAKRSK WFDS
ENSTTRP00000012957/1-757 VPRKKAKGNK TEIRFNQLVE QYKQKLLGPS KGAPLAKRSK WFDS
bmy_14111T0/1-783 VPRKKAKGNK TEIRFNQLVE QYKQKLLGPS KGAPLAKRSK WFDS
BACU006820/1-759 VPRKKAKGNK TEIRFNQLVE QYKQKLLGPS KGAPLAKRSK WFDS