KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:51 2014 Check: 00 .. Name: ENSTTRP00000009297/1-487 Len: 489 Check: 8235 Weight: 1.00 Name: ENSP00000283025/1-485 Len: 489 Check: 3245 Weight: 1.00 Name: bmy_06492T0/1-394 Len: 489 Check: 4841 Weight: 1.00 Name: ENSBTAP00000022625/1-489 Len: 489 Check: 986 Weight: 1.00 Name: BACU018788/1-489 Len: 489 Check: 2966 Weight: 1.00 // 1 50 ENSTTRP00000009297/1-487 MEFLGTTQTA SYCGPKKACR ISTLPPVASA PVSQGCYQPY YLPGYRYLNS ENSP00000283025/1-485 MEFLGTTQTA SYCGPKKCCG LTSLPAV-QA PVIQECYQPY YLPGYRYLNS bmy_06492T0/1-394 MEFLGTTQTA SYCGPKKACG ISALPPVAPA PVIQECYQPY YLPGYRYLNS ENSBTAP00000022625/1-489 MEFLGTTQTA TYCGPKKPCG GSVLPSVASG PTVQECYQPY YLPGYRYLNA BACU018788/1-489 MEFLGTTQTA SYCGPKKACG ISARPPVAPA PVIQECYQPY YLPGYRYLNS 51 100 ENSTTRP00000009297/1-487 WSPSLFCKVS NTQTCLDEGA TCRSALRPPT TLPAVRSALF CRYRPHDWDQ ENSP00000283025/1-485 WRPSLFYKIA NVQTCPDEST ---STLRPPT ILPTLRSALF SRYSPHDWDQ bmy_06492T0/1-394 WRPSLFYKVS NTQTCLDEGA TCRSALRPPT ILPAVRSALF CRYSPHDWDQ ENSBTAP00000022625/1-489 WRPSLFYKVA NAQTCLDEGA TCRSALRPPT ILPAVRSALF CRYSPQDWDQ BACU018788/1-489 WRPSLFYKVS NTQTCPDEGV TCRSALRPPT ILPAVRSALF CRYSPHDWDQ 101 150 ENSTTRP00000009297/1-487 SNQLQIHTAE ASRLWANQLM GDSMRLMQNK DQLTRQME-G TGRNLGQRLS ENSP00000283025/1-485 SNQLQVRGAE ASRLWASRLT DDSMRLLQDK DQLTHQMQEG TCRNLGQRLS bmy_06492T0/1-394 SNQLQIRAAE ASRLWAGRLM GDSMRLMQDK DQLTRQMQEG TRRNLGQRLS ENSBTAP00000022625/1-489 SNRLQLCGAE ASRLWAGRMT GDSMRLMQDK DQLTRQMQEG TCRNLGQRLS BACU018788/1-489 SNQLQIRAAE ASRLWAGRLM GDSMRLMQDK DQLTRQMQEG TSRNLGQRLS 151 200 ENSTTRP00000009297/1-487 DIGFWKSELS YELXXXXXXX XXXXXXXXXX XXXXXXXXXX XXVALECLYQ ENSP00000283025/1-485 DIGFWKSELS YELDRLLTEN QNLETVKRRL ECAANEVNCP LQVALECLYH bmy_06492T0/1-394 DIGFWKSELS YELERLLNEN HSLDAVKRRL ECTAEELNCP LQVALECQYQ ENSBTAP00000022625/1-489 DIGFWKSELN YELERLLNEN HSLDAIKRRL ECAAEELRCP LQVALECLYQ BACU018788/1-489 DIGFWKSELS YELERLLNEN HSLDAVKRRL ECMAEELNCP LQVALECQYQ 201 250 ENSTTRP00000009297/1-487 REKRTGIDLV HDNVEKNLIR EVDLLKCCQQ QLRKLAQRID IQMRDNRDAQ ENSP00000283025/1-485 REKRIGIDLV HDNVEKNLIR EVDLLKCCQE QMRKLAQRID IQMRDNRDAQ bmy_06492T0/1-394 REKRIGIDLV HDNVEKNLIQ EVDLLKCCQE QMRKLAQRID IQM------- ENSBTAP00000022625/1-489 REKRIGIDLV HDNVEKNLIR EVDMIKCCQE QMRKLAQRID IQMRDNRDAQ BACU018788/1-489 REKRIGIDLV HDNVEKNLIQ EVDLLKCCQE QMRKLAQRID IQMRDNRDAQ 251 300 ENSTTRP00000009297/1-487 HVLERDLEDK NSAEFIDEKC LNLRNTSDCI SFFHGVEKID CTISVPETWA ENSP00000283025/1-485 HVLERDLEDK SSAQCIDEKC FNLRNTSDCI SFFHGMEKID GTISVPETWA bmy_06492T0/1-394 ----RDLEDK NSAEFIDGKC LNLRNTSDCI SFFHGVEKID GT-------- ENSBTAP00000022625/1-489 HALERDLEDK NSAEFIDEKC LNLRNTTCCM LFKIFLVTMQ SKISVPETWA BACU018788/1-489 HALERDLEDK NSAEFIDGKC LNLRNTSDCI SFFHGVEQID GTISVPETWA 301 350 ENSTTRP00000009297/1-487 KFSNDNIRHS QNMQANSVQL REEAQNLFDV LLDQMWKQFT NTNLAFNARI ENSP00000283025/1-485 KFSNDNIKHS QNMRANSIQL REEAEHLFET LSDQMWRQFT DTNLAFNARI bmy_06492T0/1-394 --------HS QNMRANSVRL REEAQNLFDV LLDRMWKQFT NTNLAFNARI ENSBTAP00000022625/1-489 KFSNDNIRHS QNMRANSIRL REEAQNLFDV LADQLWRQFT NTNLAFNARI BACU018788/1-489 KFSNDNIRHS QNMRANSVRL REEAQNLFDV LLDQMWKQFT NTNMAFNARI 351 400 ENSTTRP00000009297/1-487 AEVTDVKNKM QMQLAKTLQE IFQTENTIML LERSIMAKES PLKVAQTRLE ENSP00000283025/1-485 SEVTDVKNKL QTQLAKTLQE IFQAENTIML LERSIMAKEG PLKVAQTRLE bmy_06492T0/1-394 AEVTDVKNKL QTQLAK---- ---------- ------VSEM PVRTT----- ENSBTAP00000022625/1-489 AEETDVKNKL QTQLAKTLQE IFQTENTIML LERSIMAKEC PLKVAQTRLE BACU018788/1-489 AEVTDVKNKL QTQLAKTLQE IFQTENTIML LERSIMAKEC PLKVAQTRLE 401 450 ENSTTRP00000009297/1-487 CRTRRPCVEL CRDMPQFKLM SEVCTINDTV QTLKLRLRET QDTQQLLVMT ENSP00000283025/1-485 CRTRRPNMEL CRDIPQLKLV NEVFTIDDTL QTLKLRLRET QDTLQLLVMT bmy_06492T0/1-394 VHDARPPA-L ARGSQQL--- --LVKLPASL LLLKWSQQPT ---------- ENSBTAP00000022625/1-489 CRTRRPNVEL CRDSPQFKLV NEVFTIDDTL QTLKLRLRET RDTLQLLVMT BACU018788/1-489 CRTRRPSVEL CRDMPQFKLV NEVVTIDDTL QTLKLRLRET QDTLQLLVMT 451 500 ENSTTRP00000009297/1-487 KCRLEHELAM KANTLCIDK- KCMGMRKTFP SAPCLGICP ENSP00000283025/1-485 KCRLEHELAI KANTLCIDKE KCMGMRKTFP CTPRLVGHT bmy_06492T0/1-394 ---------- ---------- -------VYE PVHPKGGRG ENSBTAP00000022625/1-489 KCRLEHELAI KANTLCIDKE KCMAMRKTFP STPCMGICP BACU018788/1-489 KCRLEHELAV KANTLCIDKE KCMGMRKTFP STACLGTCP