KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:51 2014 Check: 00 .. Name: ENSTTRP00000012644/1-563 Len: 590 Check: 384 Weight: 1.00 Name: bmy_01262T0/1-387 Len: 590 Check: 4377 Weight: 1.00 Name: BACU004909/1-364 Len: 590 Check: 5137 Weight: 1.00 Name: ENSP00000401264/1-586 Len: 590 Check: 7272 Weight: 1.00 Name: ENSBTAP00000022629/1-586 Len: 590 Check: 8942 Weight: 1.00 // 1 50 ENSTTRP00000012644/1-563 MKYILVTGGV ISGIGKGIIA SSIGTILKSC GLRVTAIKID PYINIDAGTF bmy_01262T0/1-387 MKYILVTGGV ISGIGKGIIA SSIGTILKSC GLRVTAIKID PYINIDAGTF BACU004909/1-364 MKYILVTGGV ISGIGKGIIA SSIGTILKSC GLRVTAIKID PYINIDAGTF ENSP00000401264/1-586 MKYILVTGGV ISGIGKGIIA SSIGTILKSC GLRVTAIKID PYINIDAGTF ENSBTAP00000022629/1-586 MKYILVTGGV ISGIGKGIIA SSIGTILKSC GLRVTAIKID PYINIDAGTF 51 100 ENSTTRP00000012644/1-563 SPYEHGEVFV LNDGGEVDLD LGNYERFLDI NLYKDNNITT GKIYQHVINK bmy_01262T0/1-387 SPYEHGEVFV LNDGGEVDLD LGNYERFLDI NLYKDNNITT GKIYQHVINK BACU004909/1-364 SPYEHGEVFV LNDGGEVDLD LGNYERFLDI NLYKDNNITT GKIYQHVINK ENSP00000401264/1-586 SPYEHGEVFV LNDGGEVDLD LGNYERFLDI NLYKDNNITT GKIYQHVINK ENSBTAP00000022629/1-586 SPYEHGEVFV LNDGGEVDLD LGNYERFLDI NLYKDNNITT GKIYQHVINK 101 150 ENSTTRP00000012644/1-563 ERRGDYLGKT VQVVPHITDA VQEWVMNQAM VPVDGHKEEP QICVIELGGT bmy_01262T0/1-387 ERRGDYLGKT VQVVPHITDA VQEWVMNQAM VPVDGHKEEP QIC---LGGT BACU004909/1-364 ERRGDYLGKT VQVVPHITDA VQEWVMNQAM VPVDGHKEEP QIC---LGGT ENSP00000401264/1-586 ERRGDYLGKT VQVVPHITDA VQEWVMNQAK VPVDGNKEEP QICVIELGGT ENSBTAP00000022629/1-586 ERRGDYLGKT VQVVPHITDA VQEWVMNQAM VPVDGHKEEP QICVIELGGT 151 200 ENSTTRP00000012644/1-563 IGDIEGMPFV EAFRQFQFKA KRENFCNIHV SLVPQPSATG EQKTKPTQNS bmy_01262T0/1-387 IGDIEGMPFV EAFRQFQFKA KRENFCNIHV SLVPQPSATG EQKTKPTQNS BACU004909/1-364 IGDIEGMPFV EAFRQFQFKA KRENFCNIHV SLVPQPSATG EQKTKPTQNS ENSP00000401264/1-586 IGDIEGMPFV EAFRQFQFKA KRENFCNIHV SLVPQLSATG EQKTKPTQNS ENSBTAP00000022629/1-586 IGDIEGMPFV EAFRQFQFKA KRENFCNIHV SLVPQPSATG EQKTKPTQNS 201 250 ENSTTRP00000012644/1-563 VRALRGLGLS PDLXXXXXXX XXXXXXXXXX XXXXXXXXXX VICIHDVPST bmy_01262T0/1-387 VRALRGLGLS PDLV------ ---------- -------QNQ VICIHDVSST BACU004909/1-364 VRALRGLGLS PDLIVCRSST PIEMAVKEKI SMFCHVNPEQ VICIHDVSST ENSP00000401264/1-586 VRALRGLGLS PDLIVCRSST PIEMAVKEKI SMFCHVNPEQ VICIHDVSST ENSBTAP00000022629/1-586 VRALRGLGLS PDLIVCRSST PIEMAVKEKI SMFCHVNPEQ VICIHDVSST 251 300 ENSTTRP00000012644/1-563 YRVPVLLEEQ GIVKYFKERL DLPIGDSASN LLFKWKNMAD RYERLQKTCS bmy_01262T0/1-387 YRVPVLLEEQ GIAKYFKERL DLPIGDSASN LLFKWRNMAD RYERLQKTCS BACU004909/1-364 YRVPVLLEEQ GIVKYFKERL DLPIGDSASN LLFKWRNMAD RYERLQKTCS ENSP00000401264/1-586 YRVPVLLEEQ SIVKYFKERL HLPIGDSASN LLFKWRNMAD RYERLQKICS ENSBTAP00000022629/1-586 YRVPVLLEEQ GIIKYFKERL DLPIGDSASS LLSKWRNMAD RYERLQKTCS 301 350 ENSTTRP00000012644/1-563 IALVGKYTKL RDCYASVFKA LEHSALAINH KLNLMYIDSI DLEQTTETED bmy_01262T0/1-387 IALVGKYTKL RDCYASVFKA LEHSALAINR KLNLMYIDSI DLEQTTETED BACU004909/1-364 IALVGKYTKL RDCYASVFKA LEHSALAINR KLNLM----- ---------- ENSP00000401264/1-586 IALVGKYTKL RDCYASVFKA LEHSALAINH KLNLMYIDSI DLEKITETED ENSBTAP00000022629/1-586 IALVGKYTKL RDCYASVFKA LEHSALAINH KLNLMYIDSI DLEQTTEVED 351 400 ENSTTRP00000012644/1-563 PVKFHEAWQK LCKADGVLVP GGFGIRGTLG KLQAISWARS RKIPFLGVCL bmy_01262T0/1-387 PVKFHEAWQK LCKAEFYF-- ---------- ------WCSC ---------- BACU004909/1-364 ---------- ---------- ---------- ------WCSC ---------- ENSP00000401264/1-586 PVKFHEAWQK LCKADGILVP GGFGIRGTLG KLQAISWART KKIPFLGVCL ENSBTAP00000022629/1-586 PVKFHEAWQK LCKADGVLVP GGFGIRGTLG KLQAISWARS RKIPFLGVCL 401 450 ENSTTRP00000012644/1-563 GMQLAVIEFA RNCLNLKDAD STEFEPNAHV PVXXXXXXXX XXXXXXXXXX bmy_01262T0/1-387 ---------A RRLRNQRNVG KT-------- ---------- PGDFLGTVK- BACU004909/1-364 ---------A RRLRNQRNIG KT-------- ---------- PGDFLGTVK- ENSP00000401264/1-586 GMQLAVIEFA RNCLNLKDAD STEFRPNAPV PLVIDMPEHN PGNLGGTMRL ENSBTAP00000022629/1-586 GMQLAVIEFA RNCLNLKDAD STEFEPNARV PVVIDMPEHN PGNLGGTMRL 451 500 ENSTTRP00000012644/1-563 XXXXXXXXXX XXXXXKLYGD VPFIEERHRH RYEVNPSLIN QLEHNDLSFV bmy_01262T0/1-387 ---------- ---------- ---------- ---------- ---------- BACU004909/1-364 ---------- ---------- ---------- ---------- ---------- ENSP00000401264/1-586 GIRRTVFKTE NSILRKLYGD VPFIEERHRH RFEVNPNLIK QFEQNDLSFV ENSBTAP00000022629/1-586 GIRRTVFKTE NSILRKLYGD VPFIEERHRH RYEVNPSLIS QLEQKDLSFV 501 550 ENSTTRP00000012644/1-563 GQDVDGERME IIELANHPYF VGVQFHPEFS SRPMKPSPPY LGLLLAATGT bmy_01262T0/1-387 ---------- ---------- ---------- ---------- ---------- BACU004909/1-364 ---------- ---------- ---------- ---------- ---------- ENSP00000401264/1-586 GQDVDGDRME IIELANHPYF VGVQFHPEFS SRPMKPSPPY LGLLLAATGN ENSBTAP00000022629/1-586 GQDVDGERME IIELANHPYF VGVQFHPEFS SRPMKPSPPY LGLLLAATGN 551 600 ENSTTRP00000012644/1-563 LNAYLLQGCK LSS------- ---------- ---------- bmy_01262T0/1-387 ---------- ---------- -EDSFSGMAS GAMKPDEMEH BACU004909/1-364 ---------- ---------- -EDSFSG--- ---------- ENSP00000401264/1-586 LNAYLQQGCK LSSSDRYSDA SDDSFSEPRI AELEIS---- ENSBTAP00000022629/1-586 LNAYLLQGCK LSSSDRYSDA SDDSFSEPRL AELEIS----