KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:59 2014 Check: 00 .. Name: ENSP00000384534/1-638 Len: 987 Check: 8352 Weight: 1.00 Name: ENSBTAP00000022635/1-639 Len: 987 Check: 6809 Weight: 1.00 Name: bmy_01588T0/1-946 Len: 987 Check: 2528 Weight: 1.00 Name: ENSTTRP00000009734/1-938 Len: 987 Check: 2801 Weight: 1.00 Name: BACU003320/1-981 Len: 987 Check: 7849 Weight: 1.00 // 1 50 ENSP00000384534/1-638 MEGQSSRGSR RPGTRAGLGS LPMPQGVAQT GAPSKVDSSF QLPAKKNAA- ENSBTAP00000022635/1-639 MEGRGDGGSR RPGTRAGLGP LPMPHGISQT GAPSKMDSRF QLPAKKSA-- bmy_01588T0/1-946 ---------- ---------- ---------- -----MDSCF QLPAKENAAP ENSTTRP00000009734/1-938 ---------- ---------- ---------- -----MDSRF QLSAKENAAP BACU003320/1-981 MEGQGISGSG RPGTQAGLGP LPMPHGISQT GAPSKMDSCF QLPAKENAAP 51 100 ENSP00000384534/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022635/1-639 ---------- ---------- ---------- ---------- ---------- bmy_01588T0/1-946 VRSEPRLALT PVGPPAAMPP SSKGPRLALA SPRPILAPMS TPGGQKTAPA ENSTTRP00000009734/1-938 VCSEPRLALT PVGPPAAMPS SSKGPSLALA SPRPILAPMS TPGEQKTAPA BACU003320/1-981 VRSEPRLALT PVGPPVAVPP SSKGPRLALA SPRPILAPTS TPGGQKTAPA 101 150 ENSP00000384534/1-638 ---------- ---------- --------LG PS-------- ---------- ENSBTAP00000022635/1-639 ---------- ---------- ---------- ---------- ---------- bmy_01588T0/1-946 HRSSSLAPTS VGQLVMSASA RPKPPPATLG PRLAPLSRDQ KQVPPASMGP ENSTTRP00000009734/1-938 HRSSRLAPTP VGHLVVSASA GPKPPPATLG PRLAPLSRDQ KQVPPASMGP BACU003320/1-981 HRSSSLAPTS VGQLVMSASA RPKPPPATLG PRLAPLSRDQ KQVPPASMGP 151 200 ENSP00000384534/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022635/1-639 ---------- ---------- -------PVP ---------- ---------- bmy_01588T0/1-946 KPALAASGLS LAVASEKQPP QPPSSSSPVP SPVLSPSQEQ ALTPASMTSA ENSTTRP00000009734/1-938 KPALAASGLS LAVASEKQPP QPPSSSSPVP SPVLSPSQEQ ALTPASMTSA BACU003320/1-981 KPALAASGLS LAVASEKQPP QPPSSSSPVP SPVLSPSQEQ ALTPASMTSA 201 250 ENSP00000384534/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022635/1-639 ---------- ---------- ---------- ---------- ---------- bmy_01588T0/1-946 PASVGWTPAK QRDAPAPRPL SPSEGHLQPP TQTSGPVGSP SLIQAPPDPR ENSTTRP00000009734/1-938 LASVGWTPAK QRDAPAPRPL SPSEGHLQPP TQTSGPVGSP SLIQAPPDPR BACU003320/1-981 PASVGWTPAK QRDAPVPRPL SPSDGHLQPP TQTSGPVGSP SLIQAPPDPW 251 300 ENSP00000384534/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022635/1-639 ---------- ---------- ---------- ---------- ---------- bmy_01588T0/1-946 ISPSFRARPE APRSSPEDPV LPRPPQTLPL DVGQGPPEPG TRSPGLLYPT ENSTTRP00000009734/1-938 ISPSFRARPE APRSSPEDPV LSRTPQTLPL DVGHGPPEPG TRSPGLLYPT BACU003320/1-981 ISPSFRARPE APRSSPEDPV LPRPPQTLPL DVGQGPPEPG THSPGLLYPT 301 350 ENSP00000384534/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022635/1-639 ---------- ---------- ---------- ---------- ---------- bmy_01588T0/1-946 FRPGAPLAQT VPPPLPKPPR SPSRSPSRSP NRSPCVPPAP GMAFPRPGTQ ENSTTRP00000009734/1-938 FRPGAPLAQT LPPPLHKPPR SPSRSPSRSP NRSPCVPPAP EMALPRPGTQ BACU003320/1-981 FRPGAPLAQT VPPPLPKPPR SPSRSPSRSP NHSPCVPPAP GMALPRPGTQ 351 400 ENSP00000384534/1-638 ---------- --EPR----- ---------- ---------- --------IT ENSBTAP00000022635/1-639 ---------- -LEPR----- ---------- ---------- --------IT bmy_01588T0/1-946 GAGPGGHLSP NLQPRETPAP LTTSSSTSTS SSSSWSAQPT CKSDPGFWIT ENSTTRP00000009734/1-938 GAGPGGHLSP NLQPRETPAP LTTSSSTSTS SSSSWSAQPT CKSDPGFWIT BACU003320/1-981 GAGPGGHLSP NLQPRETPAP LTTSSSTSTS SSSSWSAQPT CKSDPGFWIT 401 450 ENSP00000384534/1-638 VVTWNVGTAM PPDDVTSLLH LG-GGDDSDG ADMIAIGLQE VNSMLN---- ENSBTAP00000022635/1-639 VVTWNVGTAM PPDDVTSLLH LGSTSDDSDR ADMIAIGLQE VNSMIN---- bmy_01588T0/1-946 VVTWNVGTAM PPDDVTSLLH LGSSSDDSDR ADMIAIGPSP VGGVSRAPPP ENSTTRP00000009734/1-938 VVTWNVGTAM PPDDVTSLLH LG-SSDDSDR ADMIAIGLQE VNSMIN---- BACU003320/1-981 VVTWNVGTAM PPDDVTTLLH LGSSSDDSDR ADMIAIGLQE VNSMIN---- 451 500 ENSP00000384534/1-638 -KRLKDALFT DQWSELFMDA LGPFNFVLVS SVRMQGVILL LFAKYYHLPF ENSBTAP00000022635/1-639 -KRLKDALFT DQWSELFMDA LGPFNFVLVS TVRMQGVILL LFAKYYHLPF bmy_01588T0/1-946 IRRPPHSPPQ VAGSELYDQQ AAQ-----GR ALHRPGVILL LFAKYYHLPF ENSTTRP00000009734/1-938 -KRLKDALFT DQWSELFMDA LGPFNFVLVS TVRMQGVILL LFAKYYHLPF BACU003320/1-981 -KRLKDALFT DQWSELFMDA LGPFNFVLVS TVRMQGVILL LFAKYYHLPF 501 550 ENSP00000384534/1-638 LRDVQTDCTR TGLGGYWGNK GGVSVRLAAF GHMLCFLNCH LPAHMDKAEQ ENSBTAP00000022635/1-639 LRDVQTDCTR TGLGGYWGNK GGVSVRLAAF GHMLCFLNCH LPAHMDKAEQ bmy_01588T0/1-946 LRDVQTDCTR TGLGGYWGNK GGVSVRLAAF GHMLCFLNCH LPAHMDKAEQ ENSTTRP00000009734/1-938 LRDVQTDCTR TGLGGYWGNK GGVSVRLAAF GHMLCFLNCH LPAHMDKAEQ BACU003320/1-981 LRDVQTDCTR TGLGGYWGNK GGVSVRLAAF GHMLCFLNCH LPAHMEKAEQ 551 600 ENSP00000384534/1-638 RKDNFQTILS LQQFQGPGAQ GILDHDLVFW FGDLNFRIES YDLHFVKFAI ENSBTAP00000022635/1-639 RKDNFQTILS LQQFQGPGAQ GILDHDLVFW FGDLNFRIES YDLHFVKFAI bmy_01588T0/1-946 RKDNFQTILS LQQFQGPGAQ GILDHDLVFW FGDLNFRIES YDLHFVKFAI ENSTTRP00000009734/1-938 RKDNFQTILS LQQFQGPGAQ GILDHDSVS- FG-LNLISD- ----LLPKAI BACU003320/1-981 RKDNFQTILS LQQFQGPGAQ GILDHDLVFW FGDLNFRIES YDLHFVKFAI 601 650 ENSP00000384534/1-638 DSDQLHQLWE KDQLNMAKNT WPILKGFQEG PLNFAPTFKF DVGTNKYDTS ENSBTAP00000022635/1-639 DSEQLHQLWE KDQLNMAKNT WPILKGFQEG PLNFAPTFKF DVGTNKYDTS bmy_01588T0/1-946 DSEQLHQLWE KDQLNMAKNT WPILRGFQEG PLNFAPTFKF DVGTNKYDTS ENSTTRP00000009734/1-938 DREQLHQLWE KDQLNMAKNT WPILRGFQEG PLNFAPTFKF DVGTNKYDTS BACU003320/1-981 DSEQLHQLWE KDQLNMAKNT WPILRGFQEG PLNFAPTFKF DVGTNKYDTS 651 700 ENSP00000384534/1-638 AKKRKPAWTD RILWKVKAPG GGPSPSGRKS HRLQVTQHSY RSHMEYTVSD ENSBTAP00000022635/1-639 AKKRKPAWTD RILWKVKAPG GGPSPSGRES HRLQVTQHSY RSHMEYTVSD bmy_01588T0/1-946 AKKRKPAWTD RILWKVKAPG GGPSPSGRES HRLQVTQHSY HSHMEYTVSD ENSTTRP00000009734/1-938 AKKRKPAWTD RILWKVKAPG GGPSPSGRES HRLQVTQHSY HSHMEYTVSD BACU003320/1-981 AKKRKPAWTD RILWKVKAPG GGPSPSGRES HRLQVTQHSY HSHMEYTVSD 701 750 ENSP00000384534/1-638 HKPVAAQFLL QFAFRDDMPL VRLEVADEWV RPEQAVVRYR METVFARSSW ENSBTAP00000022635/1-639 HKPVAAQFVL HFAFRDDVPL VRLEVADEWA RPEQAVVRYR IETVFARSSW bmy_01588T0/1-946 HKPVAAQFVL HFAFRDDVPL VRLDVADEWV RPEQAVVRYR IEMRFARSSW ENSTTRP00000009734/1-938 HKPVAAQFVL HFAFRDEVPL VRLDVADEWV RPEQAVVRYR IETVFARSSW BACU003320/1-981 HKPVAAQFVL HFAFRDDVPL VRLDVADEWV RPEQAVVRYR IETVFARSSW 751 800 ENSP00000384534/1-638 DWIGLYRVGF RHCKDYVAYV WAKHEDVDGN TYQVTFSEES LPKGHGDFIL ENSBTAP00000022635/1-639 DWIGLYRVGF RHCKDYVAYV WAKHEDVDGS AYQVTFSEES LPKGHGDFIL bmy_01588T0/1-946 DWIGLYRVGF RHCKDYVAYV WAKHEDVDGN IYQVTFSEES LPKGHGDFIL ENSTTRP00000009734/1-938 DWIGLYRVGF RHCKDYVAYV WAKHEDVDGN IYQVTFSEES LPKGHGDFIL BACU003320/1-981 DWIGLYRVGF RHCKDYVAYV WAKHEDVDGN IYQVTFSEES LPKGHGDFIL 801 850 ENSP00000384534/1-638 GYYSHNHSIL IGITEPFQIS LPSSELASSS TDSSGTSSEG EDDSTLELLA ENSBTAP00000022635/1-639 GYYSHTHGIL IGVTEPFQIS LPTSEPTSSS TDSSGASSED EDDSTLELLA bmy_01588T0/1-946 GYYSHTHSIL IGVTEPFQIS LPTSELASSS TDSSGASSED EDDSTLELLA ENSTTRP00000009734/1-938 GYYSHTHSIL IGVTEPFQIS LPTSELASSS TDSSGASSEG EDDSTLELLA BACU003320/1-981 GYYSHTHSIL IGVTEPFQIS LPTSELASSS TDSSGASSED EDDSTLELLA 851 900 ENSP00000384534/1-638 PKSRSPSPGK SKRHRSRSPG LARFPGLALR PSSRERRGAS RSPSPQSRRL ENSBTAP00000022635/1-639 PKSRSPSPGK SKRHRSRSPG LARFPTLALR PSSRERRGTS RSPSPQSRRL bmy_01588T0/1-946 SKSRSPSPGK SRRHRSRSPG LARFPGLALR PSSCERRGTS RSPSPQSRRL ENSTTRP00000009734/1-938 SKSRSPSPGK SKRHRSRSPG LARFPSLALQ PSSCERRGTS RSPSPQSRRL BACU003320/1-981 SKSRSPSPGK SKRHRSRSPG LARFPGLALR PSSCERRGTS RSPSPQSRRL 901 950 ENSP00000384534/1-638 SRVAPDRSSN GSSRGSSEEG PSGLPGPWAF PPAVPRSLGL LPALRLETVD ENSBTAP00000022635/1-639 PRAAPDGAGN GGSRGSSEEG PPGLPGAWAF PPSVPRSLGL LPALRLETVD bmy_01588T0/1-946 PQVAPNRGSD GGSRGNSVEG PPGLPGSWAF PPSVPQSLGL LPALRLETID ENSTTRP00000009734/1-938 PRVAPNGGSD GGSRGNSEEG PPGLPGSWAF PPSVPQSLGL LPALRLETVD BACU003320/1-981 PRVAPNRGSD GGSQGNSEEG PPGLPGSWAF PPPVPQSLGL LPALRLETVD 951 1000 ENSP00000384534/1-638 PGGGGSWGPD REALAPN-SL SPSPQGHRGL EEGGLGP ENSBTAP00000022635/1-639 PGGGGCWGPD REALASSGSL SPSPQGRQGL EEGGLGP bmy_01588T0/1-946 PSGGSSWGPD REAPAPD-SL SPSPQGQQGL EEGGLGP ENSTTRP00000009734/1-938 PGGGSSWGPN REAPAPD-SL SPSPQGQQGM EEGGLGP BACU003320/1-981 PGGGSSWGPD REAPAPD-SL SPSPQGQQDL EEGGLGP