KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:09 2014 Check: 00 .. Name: ENSTTRP00000001773/1-946 Len: 986 Check: 4476 Weight: 1.00 Name: ENSP00000440586/1-971 Len: 986 Check: 762 Weight: 1.00 Name: BACU000795/1-809 Len: 986 Check: 9767 Weight: 1.00 Name: bmy_10635T0/1-519 Len: 986 Check: 1933 Weight: 1.00 Name: ENSBTAP00000022642/1-961 Len: 986 Check: 5171 Weight: 1.00 // 1 50 ENSTTRP00000001773/1-946 MNFLRGVMGG QSAGPQHTEA ETVRGAAGPE VTS------- -------RCA ENSP00000440586/1-971 MNFLRGVMGG QSAGPQHTEA ETVRGAAGLG LGKGSGQGRG RSTRRPEECG BACU000795/1-809 MNFLRGVMGG QSAGPQHTEA ETIQKLCDRV ASSTLLDDRR NAVRALKSLS bmy_10635T0/1-519 MNFLRGVMGG QSAGPQHTEA ETIQKLCDRV ASSTLLDDRR NAVRALKSLS ENSBTAP00000022642/1-961 MNFLRGVMGG QSAGPQHTEA ETIQKLCDRV ASSTLLDDRR NAVRALKSLS 51 100 ENSTTRP00000001773/1-946 LKFRHSFGL- -VKRIRYHVT INVYSDSEII GYALDTLYNI ISNDEEEEV- ENSP00000440586/1-971 LKFRHSFRL- -VKHILYHVT INV-SDSEII GYALDTLYNI ISNEEEEEVG BACU000795/1-809 KKYRLEVGIQ AMEHLIHVLQ TDR-SDSEII GYALDTLYNI ISNDEEEEV- bmy_10635T0/1-519 KKYRLEVGIQ AMEHLIHVLQ TDR-SDSEII GYALDTLYNI ISNDEEEEVA ENSBTAP00000022642/1-961 KKYRLEVGIQ AMEHLIHVLQ TDR-SDSEII GYALDTLYNI ISNDEEEEV- 101 150 ENSTTRP00000001773/1-946 ---------- -EENSTRQSE DLGSQFTEIF IKQQENVT-L LSSLGEFDFH ENSP00000440586/1-971 GSQ------- -EENSTRQSE DLGSQFTEIF IKQQENVTLL LSLLEEFDFH BACU000795/1-809 ---------- -EENSTRQSE DLGSQFTEIF IKQQENVTLL LSLLEEFDFH bmy_10635T0/1-519 SYSNTLSLNI TEENSTRQSE DLGSQFTEIF IKQQENVTLL LSLLEEFDFH ENSBTAP00000022642/1-961 ---------- -EENSTRQSE DLGSQFTEIF IKQQENVTLL LSLLEEFDFH 151 200 ENSTTRP00000001773/1-946 VRWPGVKLLT SLLKQLGPQV QQIILVSPMG VSRLMDLLAD SREVIRNDGV ENSP00000440586/1-971 VRWPGVKLLT SLLKQLGPQV QQIILVSPMG VSRLMDLLAD SREVIRNDGV BACU000795/1-809 VRWPGVRLLT SLLKQLGPQV QQIILVSPMG VSRLMDLLAD SREVIRNDGV bmy_10635T0/1-519 VRWPGVKLLT SLLKQLGPQV QQIILVSPMG VSRLMDLLAD SREVIRNDGV ENSBTAP00000022642/1-961 VRWPGVKLLT SLLKQLGPQV QQIILVSPMG VSRLMDLLAD SREVIRNDGV 201 250 ENSTTRP00000001773/1-946 LLLQALTRSN GAIQKIVAFE NAFERLLDII TEEGNSDGGI VVEDCLILLQ ENSP00000440586/1-971 LLLQALTRSN GAIQKIVAFE NAFERLLDII SEEGNSDGGI VVEDCLILLQ BACU000795/1-809 LLLQALTRSN GAIQKIVAFE NAFERLLDII TEEGNSDGGI VVEDCLILLQ bmy_10635T0/1-519 LLLQALTRSN GAIQKIVAFE NAFERLLDII TEEGNSDGGI VVEDCLILLQ ENSBTAP00000022642/1-961 LLLQALTRSN GAIQKIVAFE NAFERLLDII TEEGNSDGGI VVEDCLILLQ 251 300 ENSTTRP00000001773/1-946 NLLKNNNSNQ NFFKEGSYIQ RMKPWFEVGD ENSGWSAQKV TNLHLMLQLV ENSP00000440586/1-971 NLLKNNNSNQ NFFKEGSYIQ RMKPWFEVGD ENSGWSAQKV TNLHLMLQLV BACU000795/1-809 NLLKNNNSNQ NFFKEGSYIQ RMKPWFEVGD ENSGWSAQKV TNLHLMLQLV bmy_10635T0/1-519 NLLKNNNSNQ NFFKEGSYIQ RMKPWFEVGD ENSGWSAQKV TNLHLMLQLV ENSBTAP00000022642/1-961 NLLKNNNSNQ NFFKEGSYIQ RMKPWFEVGD ENSGWSAQKV TNLHLMLQLV 301 350 ENSTTRP00000001773/1-946 RVLVSPNNPP GATSSCQKAM FQCGLLQQ-C TILMXXXXXX ---XXXXXTI ENSP00000440586/1-971 RVLVSPTNPP GATSSCQKAM FQCGLLQQLC TILMATGVPA ---DILTETI BACU000795/1-809 RVLVSPNNPP GATSSCQKAM FQCGLLQQLC TILMATGVPA XXXDILTETI bmy_10635T0/1-519 RVLVSPNNPP GATSSCQKAM FQCGLLQQLC TILMATGVPA ---DILTETI ENSBTAP00000022642/1-961 RVLVSPNNPP GATSSCQKAM FQCGLLQQLC TILMATGVPA ---DILTETI 351 400 ENSTTRP00000001773/1-946 NTVSEVIRGC QVNQDYFASV NAPSNPPRPA IVVLLMSMVN ERQPFVLRCA ENSP00000440586/1-971 NTVSEVIRGC QVNQDYFASV NAPSNPPRPA IVVLLMSMVN ERQPFVLRCA BACU000795/1-809 NTVSEVIRGC QVNQDYFASV NAPSNPPRFQ ---------- ---------- bmy_10635T0/1-519 NTVSEVIRGC QVNQDYFASV NAPSNPPRPA IVVLLMSMVN ERQPFVLRCA ENSBTAP00000022642/1-961 NTVSEVIRGC QVNQDYFASV NAPSNPPRPA IVVLLMSMVN ERQPFVLRCA 401 450 ENSTTRP00000001773/1-946 VLYCFQCFLY KNQKGQGEIV STLLPSTIDA TGNSVSAGQL LCGGLFSTDS ENSP00000440586/1-971 VLYCFQCFLY KNQKGQGEIV STLLPSTIDA TGNSVSAGQL LCGGLFSTDS BACU000795/1-809 ---------- ---------- ---------- ---------- ---------- bmy_10635T0/1-519 VLY------- ---------- ---------S TGNSVSAGQL LCGGLFSTDS ENSBTAP00000022642/1-961 VLYCFQCFLY KNQKGQGEIV STLLPSTIDA TGNTVSAGQL LCGGLFSTDS 451 500 ENSTTRP00000001773/1-946 LSNWCAAVAL AHALQENATQ KEQLLRVQLA TSIGNPPVSL LQQCTNILSQ ENSP00000440586/1-971 LSNWCAAVAL AHALQENATQ KEQLLRVQLA TSIGNPPVSL LQQCTNILSQ BACU000795/1-809 ---------- ---------- ---------- ---------- ---------- bmy_10635T0/1-519 LSNWCAAVAL AHALQENATQ KEQLLRVQLA TSIGNPPVSL LQQCTNILSQ ENSBTAP00000022642/1-961 LSNWCAAVAL AHALQENATQ KEQLLRVQLA TSIGNPPVSL LQQCTNILSQ 501 550 ENSTTRP00000001773/1-946 -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000440586/1-971 GDKIDRRGSK IQTRVGLLML LCTWLSNCPI AVTHFLHNSA NVPFLTGQIA BACU000795/1-809 ---------- ---------- ---------- ---------- ----LTGQIA bmy_10635T0/1-519 GDKIDRRGSK IQTRVGLLML LCTWLSNCPI AVTHFLHNSA NVPFVS---- ENSBTAP00000022642/1-961 -------GSK IQTRVGLLML LCTWLSNCPI AVTHFLHNSA NVPFLTGQIA 551 600 ENSTTRP00000001773/1-946 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000440586/1-971 ENLGEEEQLV QGLCALLLGI SIYFNDNSLE SYMKEKLKQL IEKRIGKENF BACU000795/1-809 ENLGEEEQLV QGLCALLLGI SIYFNDNSLE SYMKEKLKQL IEKRIGKENF bmy_10635T0/1-519 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022642/1-961 ENLGEEEQLV QGLCALLLGI SIYFNDNSLE TYMKEKLKQL IEKRIGKENF 601 650 ENSTTRP00000001773/1-946 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000440586/1-971 IEKLGFISKH ELYSRASQKP QPNFPSPEYM IFDHEFTKLV KELEGVITKA BACU000795/1-809 IEKLGFISKH ELYSRASQKP QPNFPSPEYM IFDHEFTKLV KELEGVITKA bmy_10635T0/1-519 ---------- ---------- --------FM F--------- ---------- ENSBTAP00000022642/1-961 IEKLGFISKH ELYSRASQKP QPNFPSPEYM IFDHEFTKLV KELEGVITKA 651 700 ENSTTRP00000001773/1-946 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXDLQLE ELKQQISTLK ENSP00000440586/1-971 IYKSSEEDKK EEEVKKTLEQ HDNIVTHYKN MIREQDLQLE ELRQQVSTLK BACU000795/1-809 IYKSSEEDKK EEEVKKTLEQ HDSIVTHYKN MIREQDLQLE ELKQQISTLK bmy_10635T0/1-519 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022642/1-961 IYKSSEEDKK EEEVKKTLEQ HDSIVTHYKN MIREQDLQLE ELKQQISTLK 701 750 ENSTTRP00000001773/1-946 CQNEQLQTAV TQQVSQIQQH KDQYNLLKVQ LXXXXXXXXX XXXXXXXXXX ENSP00000440586/1-971 CQNEQLQTAV TQQVSQIQQH KDQYNLLKIQ LGKDNQHQGS YSEGAQMNGI BACU000795/1-809 CQNEQLQTAV TQQVSQIQQH KDQYNLLKVQ LGKDNQHQVS YSDGAQMNGI bmy_10635T0/1-519 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022642/1-961 CQNEQLQTAV TQQVSQIQQH KDQYNLLKVQ LGKDSQHQGP YTDGAQMNGV 751 800 ENSTTRP00000001773/1-946 XXXXIGRLRE EIEELKSNQE LLQSQLAEKD AFIENLKSSQ PSPGTNEQSS ENSP00000440586/1-971 QPEEIGRLRE EIEELKRNQE LLQSQLTEKD SMIENMKSSQ TS-GTNEQSS BACU000795/1-809 QPEEVGRLRE EIEELKSNQE LLQSQLAEKD SFIENLKSSQ PSPGTNEQSS bmy_10635T0/1-519 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022642/1-961 QPEEISRLRE EIEELKSNRE LLQSQLAEKD SLIENLKSSQ LSPGTNEQSS 801 850 ENSTTRP00000001773/1-946 ATASARDSEQ IEELKQELAT LKSQLNSQSS EITKLQTEKQ ELLQKTEAFA ENSP00000440586/1-971 AIVSARDSEQ VAELKQELAT LKSQLNSQSV EITKLQTEKQ ELLQKTEAFA BACU000795/1-809 ATASARDSEQ VAELKQELAT LKSQLNSQSS EITKLQTEKQ ELLQKTEAFA bmy_10635T0/1-519 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022642/1-961 ATAG--DSEQ IAELKQELAT LKSQLNSQSV EITKLQTEKQ ELLQKTEAFA 851 900 ENSTTRP00000001773/1-946 KSVPIPGESE TIIATKTTDV EGRLSALLQE TKELKNEIKA LSEERTAIKE ENSP00000440586/1-971 KSVEVQGETE TIIATKTTDV EGRLSALLQE TKELKNEIKA LSEERTAIKE BACU000795/1-809 KSVPVPGESE TVIATKTTDV EGRLSALLQE TKELKNEIKA LSEERTAIKE bmy_10635T0/1-519 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022642/1-961 KSAPVPGESE TVIATKTTDV EGRLSALLQE TKELKNEIKA LSEERTAIKE 901 950 ENSTTRP00000001773/1-946 QLDSSNSTIA ILQNEKNKLE VDITDSKKEQ DDLLVLLADQ DQKIFSLKNK ENSP00000440586/1-971 QLDSSNSTIA ILQTEKDKLE LEITDSKKEQ DDLLVLLADQ DQKILSLKNK BACU000795/1-809 QLDSSNSTIA ILQNEKNKLE VDIADSKKEQ DDLLVLLADQ DQKIFSLKNK bmy_10635T0/1-519 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022642/1-961 QLDSSNSTIA ILQNEKNKLE VDITDSKKEQ DDLLVLLADQ DQKIFSLKNK 951 1000 ENSTTRP00000001773/1-946 LKELGHPVEE EDELESGDQD DEDEEDEDDS KEQGHI ENSP00000440586/1-971 LKDLGHPVEE EDELESGDQE DEDDESEDPG KDLDHI BACU000795/1-809 LKELGHPVEE EDELESGDQD DEDDEDEDDG KEQGHI bmy_10635T0/1-519 ---------- ---------- ---------- ------ ENSBTAP00000022642/1-961 LKELGHPVEE EDELESGDQD DEDDEDEDDG KEQGHI