KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:17 2014 Check: 00 .. Name: ENSTTRP00000007509/1-789 Len: 959 Check: 4364 Weight: 1.00 Name: bmy_04827T0/1-513 Len: 959 Check: 7346 Weight: 1.00 Name: ENSP00000343325/1-948 Len: 959 Check: 5709 Weight: 1.00 Name: BACU009385/1-902 Len: 959 Check: 8514 Weight: 1.00 Name: ENSBTAP00000022652/1-938 Len: 959 Check: 9740 Weight: 1.00 // 1 50 ENSTTRP00000007509/1-789 ---------- ---------- ---------- ---------- ---------- bmy_04827T0/1-513 ------MASD ALQSEPRSWS LLEQLGLAGA DLAAPGVQQQ LELERERLRR ENSP00000343325/1-948 MAEANNPSEQ ELESEPRSWS LLEQLGLAGA DLAAPGVQQQ LELERERLRR BACU009385/1-902 MAEANPPLDR ELESEPGSWS LLEQLGLAGA DLAAPGVQQQ LELERERLRR ENSBTAP00000022652/1-938 ---------- --QSEPRSWS LLEQLGLAGA DLAAPGVQQQ LELERERLRR 51 100 ENSTTRP00000007509/1-789 ---------- ---------- ---------- ---------- ---------- bmy_04827T0/1-513 EIRKELKLKE GAENLRRATT DLGRNLGPVE LVLRGSSRRL DLLHQQLQEL ENSP00000343325/1-948 EIRKELKLKE GAENLRRATT DLGRSLGPVE LLLRGSSRRL DLLHQQLQEL BACU009385/1-902 EIRKELKLKE GAENLRRATT DLGRNLGPVE LVLRGSSRRL DLLHQQLQEL ENSBTAP00000022652/1-938 EIRKELKLKE GAENLRRATT DLGRNLGPVE LVLRGSSRRL ALLHQQLQEL 101 150 ENSTTRP00000007509/1-789 ---------- ---------- ---------- ---------- ---IELKVKQ bmy_04827T0/1-513 HAHVVLPDPA AGVHDAPQSP GAGGPACSAT NLSRVAGLEK QLAIELKVKQ ENSP00000343325/1-948 HAHVVLPDPA A-THDGPQSP GAGGPTCSAT NLSRVAGLEK QLAIELKVKQ BACU009385/1-902 HAHVVLPDPA AGVHDAPQSP GAGGPACSAT NLSRVAGLEK QLAIELKVKQ ENSBTAP00000022652/1-938 HAHVVLPDPA VGVHDAPQSP GTGDSACSAT NLSRVAGLEK QLAIELKVKQ 151 200 ENSTTRP00000007509/1-789 G-ENMIQTYS IGSTKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04827T0/1-513 GAENMIQTYS NGSTKDRKLL LTAQQMLQDS KTKIDIIRMQ LRRALQACQL ENSP00000343325/1-948 GAENMIQTYS NGSTKDRKLL LTAQQMLQDS KTKIDIIRMQ LRRALQAGQL BACU009385/1-902 GAENMIQTYS NGSTKDRKLL LTAQQMLQDS KTKIDIIRMQ LRRALQACQL ENSBTAP00000022652/1-938 GAENMIQTYS NGSTKDRKLL LTAQQMLQDS KTKIDIIRMQ LHRALQACQL 201 250 ENSTTRP00000007509/1-789 XXXXXXXXXX XSPDLGAMEL RIEELRHHFR VEHAVAEGAK NVLRLLSAAK bmy_04827T0/1-513 ESQAAPDEAQ GSPDLGAVEL RIEELRHHFR VEHAVAEGAK NVLRLLSAAK ENSP00000343325/1-948 ENQAAPDDTQ GSPDLGAVEL RIEELRHHFR VEHAVAEGAK NVLRLLSAAK BACU009385/1-902 ESQAAPDEAQ GSPDLGAVEL RIEELRHHFR VEHAVAEGAK NVLRLLSSAK ENSBTAP00000022652/1-938 ESQAAPDEAQ GSPDLGAVEL RIEELRHHFR VEHAVAEGAK NVLRLLSAAK 251 300 ENSTTRP00000007509/1-789 APDRKAVSEA QEKLTESNQK LGLLREALER RLGELPADHP KGRLLREELA bmy_04827T0/1-513 APDRKAVSEA QEKLTESNQK LGLLREALER RLGELPADHP KGRLLREELA ENSP00000343325/1-948 APDRKAVSEA QEKLTESNQK LGLLREALER RLGELPADHP KGRLLREELA BACU009385/1-902 APDRKAVSEA QEKLTESNQK LGLLREALER RLGELPADHP KGRLLREELA ENSBTAP00000022652/1-938 APDRKAVSEA QEKLTESNQK LGLLREALER RLGELPADHP KGRLLREELA 301 350 ENSTTRP00000007509/1-789 AASSSAFSAR LAGPFPAMHY STLCKPA-LT GTLEVRVVGC RDLPETIPWN bmy_04827T0/1-513 AASSSAFSAR LAGPFPAMHY STLCKPAPLT GTLEVRVVGC RDLPETIPWN ENSP00000343325/1-948 AASSAAFSTR LAGPFPATHY STLCKPAPLT GTLEVRVVGC RDLPETIPWN BACU009385/1-902 AASSSTFSAR LAGPFPAMHY STLCKPAPLT GTLEVRVVGC RDLPETIPWN ENSBTAP00000022652/1-938 AASSAAFSAR LAGPFPATHY STLSKPAPLT GTLEVRVVGC RDLPETIPWN 351 400 ENSTTRP00000007509/1-789 PSPSVGVPGT PESRTPFLSR PARGLYSRSG SLSGRSSLKA ESENTSEVST bmy_04827T0/1-513 PSPSVGVPGT PESRTPFLSR PARGLYSRSG SLSGRSSLKA ESENTSEVST ENSP00000343325/1-948 PTPSMGGPGT PDSRPPFLSR PARGLYSRSG SLSGRSSLKA EAENTSEVST BACU009385/1-902 PSPSVGVPGA PESRTPFLSR PARGLYSRSG SLSGRSSLKA ESENTSEVST ENSBTAP00000022652/1-938 PSPSVGGPGT PDSRTPFLSR PARGLYSRTG SLSGRSSLKA EAENTNEVST 401 450 ENSTTRP00000007509/1-789 VLKLDNTVVG QTSWKPCGPH AWDQSFTLEL ER-------- -ARELELAVF bmy_04827T0/1-513 VLKLDNTVVG QTSWKPCGPN AWEQSFTLEL ERMTALFLSL EARELELAVF ENSP00000343325/1-948 VLKLDNTVVG QTSWKPCGPN AWDQSFTLEL ER-------- -ARELELAVF BACU009385/1-902 VLKLDNTVVG QTSWKPCGPN AWEQSFTLEL ER-------- -ARELELAVF ENSBTAP00000022652/1-938 VLKLDNTVVG QTSWKPCGPN AWDQSFTLEL ER-------- -ARELELAVF 451 500 ENSTTRP00000007509/1-789 WRDQRGLCAL KFL-LEDFLD NERHEVQLDM EP-GCLVT-- TFRNPVIERI bmy_04827T0/1-513 WRDQRGLCAL KFLKLEDFLD NERHEVQLDM EPQGCLVAEV ---------- ENSP00000343325/1-948 WRDQRGLCAL KFLKLEDFLD NERHEVQLDM EPQGCLVAEV TFRNPVIERI BACU009385/1-902 WRDQRGLCAL KFLKLEDFLD NERHEVQLDM EPQGCLVAEV TFRNPVIERI ENSBTAP00000022652/1-938 WRDQRGLCAL KFLKLEDFLD NERHEVQLDM EPQGCLVAEV TFRNPVIERI 501 550 ENSTTRP00000007509/1-789 PRLRRQ--IF LQQQGKAFQR AQMIDVATVR LLQLIHAL-- -------HSF bmy_04827T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000343325/1-948 PRLRRQKKIF SKQQGKAFQR ARQMNIDVAT WVRLLRRLIP NATGTGTFSP BACU009385/1-902 PRLRRQKKIF SKQQGKAFQR ARQMNIDVAT WVRLLRRLIP NATATGTFSP ENSBTAP00000022652/1-938 PRLRRQKKIF SKQQGKAFQR ARQMNIDVAT WVRLLRRLIP NATATGTFSP 551 600 ENSTTRP00000007509/1-789 SGASGPEARS TGDISVEKLN LGVDLDSSPQ KSPLGPPSSP SSLXXXXXX- bmy_04827T0/1-513 --QPDPD--- ---------- --------PE K--------- ---------- ENSP00000343325/1-948 GASPGSEART TGDISVEKLN LGTDSDSSPQ KSSRDPPSSP SSLSSPIQE- BACU009385/1-902 GASPGPEARS TGDVSVEKLN LGVDLDSLPQ KSSLGPPSSP SSPTSLIQET ENSBTAP00000022652/1-938 GASPGPEARS TGDISVEKLN LGTETDSSPQ KSPLGPPSSP SSLSSPIQAT 601 650 ENSTTRP00000007509/1-789 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04827T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000343325/1-948 STAPELPSET QETPGPALCS PLRKSPLTLE DFKFLAVLGR GHFGKVLLSE BACU009385/1-902 TTTPELPSET QETPGPALCS PLRKSPLTLE DFQFLAVLGR GHFGKVLLSE ENSBTAP00000022652/1-938 TTTPELPSET QETPGPTLCS PLRKSPLTLE DFKFLAVLGR GHFGKVLLSE 651 700 ENSTTRP00000007509/1-789 XXXXXXXXXX XXXXXXXXXX XXXXXXLMCE KRILAAVTSA GHPFLVNLFG bmy_04827T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000343325/1-948 FRPSGELFAI KALKKGDIVA RDEVESLMCE KRILAAVTSA GHPFLVNLFG BACU009385/1-902 FRPSGELFAI KALKKGDIVA RDEVESLMCE KRILAAVTSA GHPFLVNLFG ENSBTAP00000022652/1-938 FRPSGELFAI KALKKGDIVA RDEVESLMCE KRILAAVTNA GHPFLVNLFG 701 750 ENSTTRP00000007509/1-789 CFQTPEHVCF VMEYSAGGDL MLHIHSDVFS EPRAVFYSAC VVLGLQFLHE bmy_04827T0/1-513 ---------- ---------M LWHLLLSVF- ---------- ---------- ENSP00000343325/1-948 CFQTPEHVCF VMEYSAGGDL MLHIHSDVFS EPRAIFYSAC VVLGLQFLHE BACU009385/1-902 CFQTPEHVCF VMEYSAGGDL MLHIHSDVFS EPRAV----- ---------- ENSBTAP00000022652/1-938 CFQTPEHVCF VMEYSAGGDL MLHIHSDVFS EPRAVFYSAC VVLGLQFLHE 751 800 ENSTTRP00000007509/1-789 HKIVYRDLKL DNLLLDTEGY VKIADFGLCK EGMGYGDRTS TFCGTPEFLA bmy_04827T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000343325/1-948 HKIVYRDLKL DNLLLDTEGY VKIADFGLCK EGMGYGDRTS TFCGTPEFLA BACU009385/1-902 ------DLKL DNLLLDTEGY VKIADFGLCK EGMGYGDRTS TFCGTPEFLA ENSBTAP00000022652/1-938 HKIVYRDLKL DNLLLDTEGY VKIADFGLCK EGMGYGDRTS TFCGTPEFLA 801 850 ENSTTRP00000007509/1-789 PEVLTDTSYT RAVDWWGLGV LLYEMLVGES PFPGDDEEEV FDSIVNDEVR bmy_04827T0/1-513 ---------- ----WKG--- ---------- -------EDV F--------- ENSP00000343325/1-948 PEVLTDTSYT RAVDWWGLGV LLYEMLVGES PFPGDDEEEV FDSIVNDEVR BACU009385/1-902 PEVLTDTSYT RAVDWWGLGV LLYEMLVGES PFPGDDEEEV FDSIVNDEVR ENSBTAP00000022652/1-938 PEVLTDTSYT RAVDWWGLGV LLYEMLVGES PFPGDDEEEV FDSIVNDEVR 851 900 ENSTTRP00000007509/1-789 YPRFLSAEAI GIMRRLLRRN PERRLGSSER DAEDVKKQPF FRTLGWDALL bmy_04827T0/1-513 --------SI GL-------- ---------- ---------- ---------- ENSP00000343325/1-948 YPRFLSAEAI GIMRRLLRRN PERRLGSSER DAEDVKKQPF FRTLGWEALL BACU009385/1-902 YPRFLSAEAI GIMR------ ---------- ---------- -RTLGWDALL ENSBTAP00000022652/1-938 YPRFLSAEAI GIMRRLLRRN PERRLGSSER DAEDVKKQPF FRTLGWDALL 901 950 ENSTTRP00000007509/1-789 ARRLPPPFVP TLAGRTDVSN FDEEFTGEAP TLSPPRDARP LTATEQAAFR bmy_04827T0/1-513 ---------- ---------- ---------- ---------- ---------- ENSP00000343325/1-948 ARRLPPPFVP TLSGRTDVSN FDEEFTGEAP TLSPPRDARP LTAAEQAAFL BACU009385/1-902 ARRLPPPFVP TLAGRTDVSN FDEEFTGEAP TLSPPRDARP LTATEQAAFQ ENSBTAP00000022652/1-938 ARRLPPPFVP TLAGRTDVSN FDEEFTGEAP TLSPPRDARP LTATEQAAFR 951 1000 ENSTTRP00000007509/1-789 DFDFVAGGC bmy_04827T0/1-513 --------- ENSP00000343325/1-948 DFDFVAGGC BACU009385/1-902 DFDFVAGGC ENSBTAP00000022652/1-938 DFDFVAGSC