KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:18 2014 Check: 00 .. Name: ENSBTAP00000022655/1-838 Len: 910 Check: 6604 Weight: 1.00 Name: ENSP00000387020/1-870 Len: 910 Check: 1808 Weight: 1.00 Name: BACU001617/1-674 Len: 910 Check: 3182 Weight: 1.00 Name: bmy_07471T0/1-869 Len: 910 Check: 259 Weight: 1.00 Name: ENSTTRP00000013607/1-366 Len: 910 Check: 9290 Weight: 1.00 // 1 50 ENSBTAP00000022655/1-838 MEKTKT---- ---------- ---------K QGDNEHKPMN NPSAQIYQLQ ENSP00000387020/1-870 MEKTKT---- ---------- ---------K QGENEHMPVN NPSTQIYQLQ BACU001617/1-674 ---------- ---------- ---------- -------MRN VFNSLENKLQ bmy_07471T0/1-869 ASKYKSSLHL PPVGARLQRQ DGGIITSLEQ LHEKINEMRN VFNSLENKLQ ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000022655/1-838 ALASELKTGF TEAMQELSRI QHGEYALEEK VKSCRCSMEE KVTEMKNSLN ENSP00000387020/1-870 ALASELKTGF TEAMQELSRI QHGEYALEEK VKSCRCSMEE KVTEMKNSLN BACU001617/1-674 ALASELKTGF TEAMQELSRI QHGEYALEEK VKSCRCSMEE KVTEMKNSLN bmy_07471T0/1-869 ALASELKTGF TEAMQELSRI QHGEYALEEK VKSCRCSMEE KVTEMKNSLN ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000022655/1-838 YFKEELSNAM SMIQAITSKQ EEMQQKIEQL QQEKRRESRK VKAKKTQKEE ENSP00000387020/1-870 YFKEELSNAM SMIQAITSKQ EEMQQKIEQL QQEKRRESRK VKAKKTQKEE BACU001617/1-674 YFKEELSNAM SMIQAITSKQ EEMQQKIEQL QQEKRRESRK VKAKKTQKEE bmy_07471T0/1-869 YFK------- ----AITSKQ EEMQQKIEQL QQEKRRESRK VKAKKTQKEE ENSTTRP00000013607/1-366 ---------M SMIQAITSKQ EEMQQKIEQL QQEKRRESRK VKAKKTQKEE 151 200 ENSBTAP00000022655/1-838 HGSQAGPAQA QGSPFRSINI PEPVLPSEDF TNLLPSQAYE KDLLLRANTN ENSP00000387020/1-870 HSSQAGPAQA QGSPFRSINI PEPVLPSEDF TNLLPSQAYE KAQESRS-VH BACU001617/1-674 HGSQAGPAQA QGSPFRSINI PEPVLPSEDF TNLLPSQAYE KAQEARS-MH bmy_07471T0/1-869 HGSQAGPAQA QGSPFRSINI PEPVLPSEDF TNLLPSQAYE KAQEARS-MH ENSTTRP00000013607/1-366 HGSQAGPAQA QGSPFRSINI PEPVLPSEDF TNLLPSQAYE KAQEARS-MH 201 250 ENSBTAP00000022655/1-838 LGILSFK-RV GSLMLKISKR GSINSRPTV- --ISSRAGLV VFHPYGLRNN ENSP00000387020/1-870 VGDSNVKGMM GPGVNPTTPE AEENLKSCLS ADIQSKGHL- ---PSGMWRQ BACU001617/1-674 VGDSNVKGMM GPGMNPTTPE AEENLKSCLS ADIQHKGHL- ---PPGVWRQ bmy_07471T0/1-869 VGDSNVKGMM GPGMNPTTPE AEENLKSCLS ADIQHKGHL- ---PPGVWRQ ENSTTRP00000013607/1-366 VADSNVKGMM GPGMNPTTPE AEENLKTCLS ADIQHKGHL- ---PPGVWRQ 251 300 ENSBTAP00000022655/1-838 PWKNVEWAWK VEVRSEFMLK LEVKGPNFQK GLANILT-II VTAKRQTVAL ENSP00000387020/1-870 PKDGKEWG-E EYVTKDHPDK LKEAGQGRHS SLENVLCETS LAAKRQTVAL BACU001617/1-674 PKDSKEWG-E EYVTKDHPDK LKEAGQGRHS SLENILCETS LAAKRQTVAL bmy_07471T0/1-869 PKDSKEWG-E EYVTKDHPDK LKEAGQGRHS SLENILCETS LAAKRQTVAL ENSTTRP00000013607/1-366 PKDSKEWG-E EYVTKDHPDK LKEAGQGRHS SLENILCETS LAAKRQTVAL 301 350 ENSBTAP00000022655/1-838 ELLESERKYV INISLILKIK ATFQGSDGKR NSKERSLFPG SLRYIVQQHL ENSP00000387020/1-870 ELLESERKYV INISLILKIK ATFQGSDGKR NSKERSLFPG SLRYLVQQHL BACU001617/1-674 ELLESERKYV INISLILKIK ATFQGSDGKR NSKERS---- -----CQQYT bmy_07471T0/1-869 ELLESERKYV INISLILKIK ATFQGSDGKR NSKERSLFPG SLRYLVQQHL ENSTTRP00000013607/1-366 ELLESERKYV INISLILKIK ATFQGSDGKR NAKERSLFPG SLRYLVQQHL 351 400 ENSBTAP00000022655/1-838 DLLHALQERV LKWPRQGVLG DLFLKLTNDE NNFLDYYVAY LRDLPECISL ENSP00000387020/1-870 DLLHALQERV LKWPRQGVLG DLFLKLTNDE NNFLDYYVAY LRDLPECISL BACU001617/1-674 QS-------- ---PKRNAPP IWVI-----E NNFLDYYVAY LRDLPECISL bmy_07471T0/1-869 DLLHALQERV LKWPRQGVLG DLFLKLTNDE NNFLDYYVAY LRDLPECISL ENSTTRP00000013607/1-366 DLLHALQERV LKWPRQGVLG DLFLKLTNDE NNFLDYYVAY LRDLPECISL 401 450 ENSBTAP00000022655/1-838 VHVVVLKEGD EEIKSDIYTL FFHIVQRIPE YLIHLQNVLK FTEQEHPDYY ENSP00000387020/1-870 VHVVVLKEGD EEIKSDIYTL FFHIVQRIPE YLIHLQNVLK FTEQEHPDYY BACU001617/1-674 VHVVVLKEGD EEIKSDIYTL FFHIVQRIPE YLIHLQNVLK FTEQEHPDYY bmy_07471T0/1-869 VHVVVLKEGD EEIKSDIYTL FFHIVQRIPE YLIHLQNVLK FTEQEHPDYY ENSTTRP00000013607/1-366 VHVVVLKEGD EEIKSDIYTL FFHIVQRIPE YLIHLQNVLK FTEQEHPDYY 451 500 ENSBTAP00000022655/1-838 LLLVCVQRLR VFISHYTLLF QCNEDLLIQK RKKLKKSSMA KLYKGLASQC ENSP00000387020/1-870 LLLVCVQRLR VFISHYTLLF QCNEDLLIQK RKKLKKSSMA KLYKGLASQC BACU001617/1-674 LLLVCVQRLR VFISHYTLLF QCNEDLLIQK RKKLKKSSMA KLYKGLASQR bmy_07471T0/1-869 LLLVCVQRLR VFISHYTLLF QCNEDLLIQK RKKLKKSSMA KLYKGLASQC ENSTTRP00000013607/1-366 LLLVCVQRLR VFISHYTLLF QCNEDLLIQK R--------- ---------- 501 550 ENSBTAP00000022655/1-838 ANAGQDASPT AGPEAVRDSG IHSEEMLQPY PSAPSSGPAV THLMPPVKKS ENSP00000387020/1-870 ANAGQDASPT AGPEAVRDTG IHSEELLQPY PSAPSSGPAI THLMPPVKKS BACU001617/1-674 ANAGQDASPT AGPEAVRDSG IHSEEMLQPY SSAPSSGPAV THLMPPLKKS bmy_07471T0/1-869 ANAGQDASPT AGPEAVRDSG IHSEEMLQPY SSAPSSGPAV THLMPPLKKS ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000022655/1-838 QQQQSLMESM QPGKPSDWEM EGRKHERPES LLAPAQFCAA EQDVKALAGP ENSP00000387020/1-870 QQQQSLMESM QPGKPSDWEL EGRKHERPES LLAPTQFCAA EQDVKALAGP BACU001617/1-674 QQQQSLMESM QPGKPSDWEI ESRKHERPES LLAPGQFCAA EQDVKALAGP bmy_07471T0/1-869 QQQQSLMESM QPGKPSDWEI ESRKHERPES LLAPGQFCAA EQDVKALAGP ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000022655/1-838 LQAIPEMDFE PSPAEPLGNV ERSLRAPAEL LPDARSYVPA AYEEFEYGGE ENSP00000387020/1-870 LQAIPEMDFE SSPAEPLGNV ERSLRAPAEL LPDARGFVPA AYEEFEYGGE BACU001617/1-674 LQAIPEMDFE PSPAEQLGNV ERSLRAPAEL LTDARGYVPA AYDEFEYGGE bmy_07471T0/1-869 LQAIPEMDFE PSPAEQLGNV ERSLRAPAEL LTDARGYVPA AYDEFEYGGE ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000022655/1-838 IFALPAPYDE EPFQAPALFE NCSPASSESS LDICFLRPVS FAMEAERPEH ENSP00000387020/1-870 IFALPAPYDE EPFQAPALFE NCSPASSESS LDICFLRPVS FAMEAERPEH BACU001617/1-674 IFALPAPYDE EPFQAPALFE NCSPASSESS LDICFLRP-- ---------- bmy_07471T0/1-869 IFALPAPYDE EPFQAPALFE NCSPASSESS LDICFLRPVS FAVEAERPEH ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000022655/1-838 PLQPLPKSAT SPAGSSSAYK LEAAAQAH-K TKPLSRSLKE FPRAPPPEGV ENSP00000387020/1-870 PLQPLPKSAT SPAGSSSAYK LEAAAQAHGK AKPLSRSLKE FPRAPPADGV BACU001617/1-674 ---------- ---------- ---------- ---------- ---------- bmy_07471T0/1-869 PLQPLPKSAT SPAGSSSAYK LEAAAHAHAK AKPLSRSLKE FPRAPPPEGV ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000022655/1-838 APRLYSTRSS SGGRAPLKAE RAAQAHGPAA ---SARGAPR TFFPQQRSQS ENSP00000387020/1-870 APRLYSTRSS SGGRAPIKAE RAAQAHGPAA AAVAARGASR TFFPQQRSQS BACU001617/1-674 ---------- ---------- ---------- ---------- ---------- bmy_07471T0/1-869 APRLYSTRSS SGGRAPLKAE RAAQPHGSAA ---SARGAPR TYFPQQRSQS ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000022655/1-838 EKQTYLE--- EMHLEDATRF CPKEERESEQ TSFSDQNPRQ DQKGGFRSSF ENSP00000387020/1-870 EKQTYLEVRR EMHLEDTTRF CPKEERESEQ TSFSDQNPRQ DQKGGFRSSF BACU001617/1-674 ---------- EMHLEDATRF CPKEERESEQ TSFSDQNPRQ DQKGGFRSSF bmy_07471T0/1-869 EKQTYLE--- EMHLEDATRF CPKEERESEQ TSFSDQNPRQ DQKGGFRSSF ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000022655/1-838 RKLFKKKNGN STGEDFCGPW GWW------- ---------- ---------- ENSP00000387020/1-870 RKLFKKK--- -------SSG SEYREKTNEN PSMDPSPTKQ DFFRNRLALA BACU001617/1-674 RKLFKKK--- ---------- ---------- ------IIDL DLS------- bmy_07471T0/1-869 RKLFKKK--- -------GLF GWW------- -PHPPRMLLR DEARHGARCN ENSTTRP00000013607/1-366 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000022655/1-838 ---------- ENSP00000387020/1-870 NDLDQGTAV- BACU001617/1-674 ---------- bmy_07471T0/1-869 RKPEKGFSSL ENSTTRP00000013607/1-366 ----------