KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:19 2014 Check: 00 .. Name: ENSP00000371308/1-1338 Len: 1358 Check: 4640 Weight: 1.00 Name: ENSBTAP00000022667/1-1354 Len: 1358 Check: 8068 Weight: 1.00 Name: ENSTTRP00000012059/1-1343 Len: 1358 Check: 345 Weight: 1.00 Name: bmy_11019T0/1-723 Len: 1358 Check: 5540 Weight: 1.00 Name: BACU000178/1-1354 Len: 1358 Check: 1557 Weight: 1.00 // 1 50 ENSP00000371308/1-1338 MFLMPTSSEL NSGQNFLTQW MTNPSRAGVI LNRGFPILEA DKEKRAAVDI ENSBTAP00000022667/1-1354 MFLMPTSSEL NSGQDFLTQW MANPSRAGVI LNRGFPILEA EEDKPANVNF ENSTTRP00000012059/1-1343 MFLMSASSEL NSGQNFLTQW MTSPSRAGVI LNRGFPILEA EEEKRVN-DI bmy_11019T0/1-723 ---------- ---------- ---------- ---------- ---------- BACU000178/1-1354 MFLMSTSSEL NSGQNFLTQW MTSPSRAGVI LNRGFPILEA EEEKRANVNI 51 100 ENSP00000371308/1-1338 STSFPIKGTH FSDSFSFINE EDSLLEEQKL ESNNPYKPQS DKSETHTAFP ENSBTAP00000022667/1-1354 STNFPIKATK FSNSFSFIRE EDSLHEEQKL EPNSPYKLQS DKPEPQRVFA ENSTTRP00000012059/1-1343 STSFPIN-TD FSNSFSFISE EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11019T0/1-723 ---------- ---------- ---------- ---------- ---------- BACU000178/1-1354 STNSPIKPTD FSNSFSFISE EDSLHEEQKL EPNSPYKLQT DKSETQRVFP 101 150 ENSP00000371308/1-1338 CIKKGPQVAA CHSAPGHQEE NKNDFIPDLA SEFKEGAYKD PLFKKLEQLK ENSBTAP00000022667/1-1354 LTKEGPQLVA RQDAPGQWED SKNEFIADLL SELKEVPYKD PLVKKLEQLK ENSTTRP00000012059/1-1343 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLK bmy_11019T0/1-723 ---------- ---------- ---------- ---------- ---------- BACU000178/1-1354 STKEGTQIVA CEHAPGHWED NKNDFISDPG SEFKEVAYKD PLFKKLEQLK 151 200 ENSP00000371308/1-1338 EVQQKKQEQL KRQQLEQLQR LMEEQEKLLT MVSGQCTLPG LSLLPDDQSQ ENSBTAP00000022667/1-1354 EEQQKKQEQL KRRQLEQLQR LMGEQEELLA LVSGQQTLPG LTPLPDDQSQ ENSTTRP00000012059/1-1343 EVQQKKQEQL KRQQLEQLQR LMAEQEKLLT MVSGQHTLPG LTLVPDDQSQ bmy_11019T0/1-723 ---------- ---------- ---------- ---------- ---------- BACU000178/1-1354 EVQQKKQEQL KRQQLEQLQR LMEEQEKLLA MVSGQHTLPG LTLVPDDQSQ 201 250 ENSP00000371308/1-1338 -KHRSPGNTT TGERATCCFP SYVYPDPTQE ETYPSNILSH EQSNFCRTAH ENSBTAP00000022667/1-1354 KKYRPPGNST TVEKTTPFLP SYIYQNQSQE KKHPSNILSS EQNDFCRTTH ENSTTRP00000012059/1-1343 -KYRSPGNSA TVEKPTAFLP SYIYQNQTQE KKHTSNILSD EQNNFRRTTH bmy_11019T0/1-723 ---------- ---------- ---------- ---------- ---------- BACU000178/1-1354 -KYRSPGNSA TVEKPTPFLP SYIYQNQTQE KKHTSNILSD EQNNFRRTTH 251 300 ENSP00000371308/1-1338 GDFVLTSKR- ASPNLFSEAQ YQEAPVEKNN LKEENRNHPT GESIL-CWEK ENSBTAP00000022667/1-1354 QDFVLTSRSG ASPSVFYEAQ CQEALVKKND LKEENDNYSK GEGILPCLEK ENSTTRP00000012059/1-1343 PDFVLTSKSG ASPNLFYEAQ HQEALVKKND LXXXXXXXXX XEGILPCSEK bmy_11019T0/1-723 ---------- ---------- ---------- ---------- ---------- BACU000178/1-1354 QDVVLTSKSG ASPNLFYEAQ YQEALVKKND LKEENHNHPK GEGILPCSEK 301 350 ENSP00000371308/1-1338 VTEQIQEAND KNLQKHDDSS EVANIEERPI KAAIGERKQT FEDYLEEQIQ ENSBTAP00000022667/1-1354 MTEQIQEGND TNLKKIGDSS EVVNIEERPI KAAIRERKQT FEDYLEEQIR ENSTTRP00000012059/1-1343 MTEQIQEGNN TNLKKIGDSS EVVNIEERPI KAAIRERKQT FEDYLEEQIR bmy_11019T0/1-723 MTEEIQEGND TNLKKIGDSS EVVNIEERPI KAAIRERKQT FEDYLEEQIR BACU000178/1-1354 MTEEIQEGND TNLKKIGDSS EVVNIEERPI KAAIRERKQT FEDYLEEQIR 351 400 ENSP00000371308/1-1338 LEEQELKQKQ LKEAEGPLPI KAKPKQPFLK RGEGLARFTN AKSKFQKGKE ENSBTAP00000022667/1-1354 LEELERQQKQ LKEAEGSLLI KAKPKQPFLK RGEGLARFTN AKSKFQKGRE ENSTTRP00000012059/1-1343 LEEQELKQKQ LREAEGSLLI KAKPKQPFLK RGEGLARFTN AKSKFQKGRE bmy_11019T0/1-723 LEEQELKQKQ LREAEGSLLI KAKPKQPFLK RGEGLARFTN AKSKFQKGRE BACU000178/1-1354 LEEQELKQKQ LREAEGSLLI KAKPKQPFLK RGEGLARFTN AKSKFQKGRE 401 450 ENSP00000371308/1-1338 SKLVTNQSTS EDQPLFKMDR QQLQRKTALK NKELCADNPI LKKDSKARTK ENSBTAP00000022667/1-1354 SNLVTTQSIS EDQPVFKSEK QQFQRKTALI NKEICTENLP VKKNSKVRAK ENSTTRP00000012059/1-1343 NKLVTTQSIS EDKPVFKLDK QQFQRKTAHI NKELCTENLP VKKNSKARTK bmy_11019T0/1-723 SKLVTTQSIS EDKPVFKLDK QQFQRKTALI NKELCTENPP VKKNGKTRTK BACU000178/1-1354 SKLVTTQSIS EDKPVFKLDK QQFQRKTALI SKELCTENLP VKKNSKTRTK 451 500 ENSP00000371308/1-1338 SGSVTLSQKP KMLKCSNRKS LSPSGLKIQT GKKCDGQFRD QIKFENKVTS ENSBTAP00000022667/1-1354 CRSLTLSQKP KVLKSNSRKS LSPSGLKMPA GKKCDGQFRE QISLGKKVES ENSTTRP00000012059/1-1343 SGCVTLSQKP KVLKGNNRKS LSPAGLKILA GKKCDGQFRG QINLEKTVES bmy_11019T0/1-723 SGCVTLSQKP KVLKGNNRKS LSPAGLKILA GKKCDGQFRG QINLEKKVES BACU000178/1-1354 SGCVTLSQKP KVLKGNNRKS LSPAGLKILA GKKCDGQFRG QINLEKKVES 501 550 ENSP00000371308/1-1338 NNKENVTECP KPCDTGCTGW NKTQGKDRLP LSTGPASRLA AKSPIRETMK ENSBTAP00000022667/1-1354 NNKENVPECT KPCDVGGTIW NKARSKDRLP TSTGLISCMA SQNPASGSLK ENSTTRP00000012059/1-1343 NNKENVPECT KPCDVGCKIW NNTQGKDRLS LLTGLASCVA SKSPISETSK bmy_11019T0/1-723 NNKENVPECT KPCDVGCKIW NKTQGKDRLP LSTGLASCVA SKSPVSETSK BACU000178/1-1354 NNKENVPECT KPCDVGCKIW NKTQGKDRLP LSTGLASCVA SKSPVSETLK 551 600 ENSP00000371308/1-1338 ESESSLDVSL QKKLETWERE KEKENLELDE FLFLEQAADE ISFSSNSSFV ENSBTAP00000022667/1-1354 GSESSLDDSL QKKLENWERE KEKENLELDE FLFLEQAADE ISFSSNSSFV ENSTTRP00000012059/1-1343 ESESSLDISL QKKLENWERE KEKENLELDE FLFLEQAADE ISFSSNSSFV bmy_11019T0/1-723 ESESSLDISL QKKLENWERE KEKENLELDE FLFLEQAADE ISFSSNSSFV BACU000178/1-1354 ESESSLDISL EKKLENWERE KEKENLELDE FLFLEQAADE ISFSSNSSFV 601 650 ENSP00000371308/1-1338 LKILERDQQI CKGHRMSSTP VKAVPQ-KTN PADPISHCNR SEDLDHTARE ENSBTAP00000022667/1-1354 LKILERDQQN CRGRRLSSTP VKSVREEKTA TLGSVSQHNQ NEDPGRAQCG ENSTTRP00000012059/1-1343 LKILERDQQI CRGHRLSSTP VKAVQQEKTA TPDPISERNQ NEDPDRTKCE bmy_11019T0/1-723 LKILERDQQI CRGHRLSSTP VKAVQQEKTT PPGPIRECKQ NEDPDRTKCE BACU000178/1-1354 LKILERDQQI CRGHRLSSTP VKAVQQEKTP PPGPISECKQ NEGPDRTKCE 651 700 ENSP00000371308/1-1338 KESECEVAPK QLHSLSSADE LREQPCKIRK AV-QKSTSEN QTEWNARDDE ENSBTAP00000022667/1-1354 SKAECEVAAR QRDSVFSPGA SWAPSCEVRR RVYQTNPPER QARWSAGDGE ENSTTRP00000012059/1-1343 SKGECEVAPK QPDSVSSPDG SQEQSCKVNR KVFQMSTCES PTRWNASDDE bmy_11019T0/1-723 SQGECELAPQ RPDSVSLPDG PQEQSCKVSR KVFQMSTCES PTRWHASDDG BACU000178/1-1354 SQAECELAPQ RPDSVSSPDG PQEQSCKVSR KVFQMSTCES PTRWNASDDG 701 750 ENSP00000371308/1-1338 GVPNSDSSTD SEEQLDVTIK PSTEDRERGI SSREDSPQVC DDKGPFKDTR ENSBTAP00000022667/1-1354 GVTDSDHSTD LEEQLDVTIK PSSVGKERSS SSREDSPQVC DDKGPFRDTT ENSTTRP00000012059/1-1343 GGTDSDDSTD SEEHLDVTIK PSTEDKERGF SSREDSPQVC DGRGPLRDTR bmy_11019T0/1-723 GGTDSDDSTD SEEQLDVTIK PSTEDKERGF SSREDSPQVC DGRGPLRDTR BACU000178/1-1354 GGTDSGDSTD SEEQLDVTIK PSTEDKERGF SSREDSPQVC DGRGPLRDTR 751 800 ENSP00000371308/1-1338 TQ-EDKRRDV DLDLSDKDYS SDES-IMESI KHKVSEPSRS -SSLSLSKMD ENSBTAP00000022667/1-1354 TQEEEKRRDV DLDLSDKDYS SDDSLIIESL KNKLSDSSRR HSSISVNKID ENSTTRP00000012059/1-1343 TQEEDKRRDV DLDLSDKDYS SDESIIIAGL KNKASDSSRR YPSMS--KID bmy_11019T0/1-723 TQEEDKKRDV DLDLSDKDYS SDESIIIASL KNKASDSSRR HPSMS--KID BACU000178/1-1354 TQEEDKRRDV DLDLSDKDYS SDESIIITSL KNKASDSSRG HPSMS--KID 801 850 ENSP00000371308/1-1338 FDDERTWTDL EENLCNHDVV LGNESTYGTP QTCYPN-NEI GILDKTIKRK ENSBTAP00000022667/1-1354 FDDERTWTDL EDNSFKHDGV LGNEAIYGTP QTTCPNKSEM CVLDKTIKRK ENSTTRP00000012059/1-1343 FDDERTWTDL EDDSFKHDVI LGNEAIYGTP QTTYPNKSEK CVLDKTIKRK bmy_11019T0/1-723 FDDERTWTDL EDDSFKHDVI LGNEAVYGTP QTTYPNKSEI CVLDKTIKRK BACU000178/1-1354 FDDERTWTDL EDDSFKHDVI LGNEAIYGIP QTTYPNKSEI CVLDKTIKRK 851 900 ENSP00000371308/1-1338 IAPVKRGEDL SKSRRSRSP- PTSELMMKFF PSLKPKPKSD SHLGNELKLN ENSBTAP00000022667/1-1354 VVPVKKGEDL GKSSRGPSPP PTSGLMMEFF PSLKSKSKSH SRSGNDPKLD ENSTTRP00000012059/1-1343 VAAVKKGEDL NKSSRSTSPP PTSDLMMKFF PSLKPKSKSD SRLGNEPKLN bmy_11019T0/1-723 VAPVKKGEGL NKSSRSTSPP PTSDLMMKFF PSLKPKSKSD SRLGNEPKLN BACU000178/1-1354 VAPVKKGEGL NKSSRSTSPP PTSDLMMKFF PSLKPKSKSD SRLGNEPKLN 901 950 ENSP00000371308/1-1338 ISQDQPPGDN ARSQVLREKI IELETEIEKF KAENASLAKL RIERESALEK ENSBTAP00000022667/1-1354 TSQDHPPGGN ARSQVLREKI IELETEIEKF KAENASLAKL RTERESALEK ENSTTRP00000012059/1-1343 INQDQPPGDN VRSQVLREKV IELETEIEKF KAENTSLAKL RIERERALEK bmy_11019T0/1-723 INQDQPPGDN ARSQVLREKV IELETEIEKF KAENTSLAKL RIERESALEK BACU000178/1-1354 INQDQPPGDN ARSQVLREKV TELETEIEKF KAENTSLAKL RIERESALEK 951 1000 ENSP00000371308/1-1338 LRKEIADFEQ QKAKELARIE EFKKEEMRKL QKERKVFEKY TTAARTFPDK ENSBTAP00000022667/1-1354 LRKEIADFEQ QKAKELARIE EFKKEEMRKL QKERKVFEKY STVARTFPDK ENSTTRP00000012059/1-1343 LRKEIADFEQ QKAKELARIE EFKKEEMRKL QKERKVFEKY STVA-TFPDK bmy_11019T0/1-723 LRKEIADFEQ QKAKELARVE EFKKEEMRKL QKERKVFEKY STVARTFPDK BACU000178/1-1354 LRKEIADFEQ QKAKELARVE EFKKEEMRKL QKERKVFEKY STVARTFPDK 1001 1050 ENSP00000371308/1-1338 KEREEIQTLK QQIADLREDL KRKETKWSST HSRLRSQIQM LVRENTDLRE ENSBTAP00000022667/1-1354 KEREEIQVLK RQVSDLQEDL KRKEAKWSST HGRLRSQIEM LVRENTDLRE ENSTTRP00000012059/1-1343 E--REIQALK QQVADLQEDL KRKEGKWSST HGRLRSQIEM LVKENTDLRE bmy_11019T0/1-723 KEREEIQV-- ---------- ---------- ---------- ---------- BACU000178/1-1354 KEREEIQALK QQIADLQEDL KRKEAKWSST HGRLRSQIEM LVKENTDLRE 1051 1100 ENSP00000371308/1-1338 EIKVMERFRL DAWKRAEAIE SSLEVEK--- ---KDKLANT SVRFQNSQIS ENSBTAP00000022667/1-1354 EIKVMERFRL DAWKKAEATE SSARMGQCVT ASKKDGFLNS SVRFQKSQIS ENSTTRP00000012059/1-1343 EMKVMERFRL DAWKKAEATE SSSRMGQ--- ---RDGLEKS SVRFQKSQVS bmy_11019T0/1-723 ---------- ---------- ---------- ---------- ---------- BACU000178/1-1354 EIKVMERFRL DAWKKAEATE SSTRMGQCVT ASRRDGSTKS SVRFQKSQVS 1101 1150 ENSP00000371308/1-1338 SGTQVEKYKK NYLPMQGNPP RRSKSAPPRD LGNLDKGQAA SPREPLEPLN ENSBTAP00000022667/1-1354 SGTQVEKYKK NYLPTQGNPS QRSKSE-PRD LGSSEKGQTA SPRELPEPVN ENSTTRP00000012059/1-1343 SGTQVEKYKK TYLPTQGNPS RRSKSV-SRD LGNSDKGQTA LPREPPEPVN bmy_11019T0/1-723 ---------- ---------- ---------- ---------- ---------- BACU000178/1-1354 SGTQVEKYKK NYLPTQGNPS RRSKSV-SRD LGNSDKGQTA SPREPPEPVN 1151 1200 ENSP00000371308/1-1338 FPDPEYKEEE ---EDQDIQG EISHPDGKVE KVYKNGCRVI LFPNGTRKEV ENSBTAP00000022667/1-1354 FPDPDYKEED ---EKEEIEG EITHPDGKIE KVYKNGCHVV LFPNGTRKEV ENSTTRP00000012059/1-1343 SPDPECKDDD EKEEKEEIQG EISHPDGKIE KVYKNGCRVI LFPNGTRKEA bmy_11019T0/1-723 ---------- ---------- ---------- ------CQ-- ---------- BACU000178/1-1354 SPDPECKEED EKEEKEEIQG EISHPDGKIE KVYKNGCHVI LFPNGTRKEA 1201 1250 ENSP00000371308/1-1338 SADGKTITVT FFNGDVKQVM PDQRVIYYYA AAQTTHTTYP EGLEVLHFSS ENSBTAP00000022667/1-1354 SADGETVTVT FFNGDIKQVM PDGRVVYYYA ATQTAHTTFP EGLEVLHFSN ENSTTRP00000012059/1-1343 SADGKTVTIT FFNGDVKQVM PDGRVIYYYA ATHTTHTTYP EGLEVLHFSS bmy_11019T0/1-723 ---------- FFT------- -----LYSY- ---------- ---------- BACU000178/1-1354 SADGKTVTVT FFNGDIKQVT PDGRVIYYYA ATHTTHTTYP EGLEVLHFSS 1251 1300 ENSP00000371308/1-1338 GQIEKHYPDG RKEITFPDQT VKNLFPDGQE ESIFPDGTIV RVQRDGNKLI ENSBTAP00000022667/1-1354 GQIEKHFPDG RKEITFPDRT IKNLFADGQE ESIFPDGTVV RVQRDGNKII ENSTTRP00000012059/1-1343 GQIEKHFPDG RKEITFPDQT VKNLFADGQE ESIFPDGTIV RGQRDGNKII bmy_11019T0/1-723 ---------- ---------- ---------- ---------- -------KLV BACU000178/1-1354 GQIEKHFPDG RKEITFPDQT IKNLFADGQE ESIFPDGTIV RGQRDGNKII 1301 1350 ENSP00000371308/1-1338 EFNNGQRELH TAQFKRREYP DGTVKTVYAN GHQETKYRSG RIRVKDKEGN ENSBTAP00000022667/1-1354 EFNNGQRELH TAQFKRREYP DGTVKTVYTN GHQETKYTSG RVRMKDKDGN ENSTTRP00000012059/1-1343 EFNNGQRELH TAQFKRREYP DGTVKTVYAN GLQETKYSSG RVRVKDKDGN bmy_11019T0/1-723 KM-------- ---------- -----TVW-- ---------- ---------- BACU000178/1-1354 EFNNGQRELH TAQFKRREYP DGTVKTVYTN GLQETKYSSG RVRVKDKDGN 1351 1400 ENSP00000371308/1-1338 VLMDTEL- ENSBTAP00000022667/1-1354 VLMDTKLS ENSTTRP00000012059/1-1343 VLMDTKLS bmy_11019T0/1-723 -------- BACU000178/1-1354 VLMDTKLS