KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:22 2014 Check: 00 .. Name: ENSP00000380948/1-769 Len: 898 Check: 9346 Weight: 1.00 Name: ENSBTAP00000022687/1-769 Len: 898 Check: 9562 Weight: 1.00 Name: bmy_18495T0/1-569 Len: 898 Check: 5636 Weight: 1.00 Name: ENSTTRP00000000898/1-750 Len: 898 Check: 6763 Weight: 1.00 Name: BACU004355/1-716 Len: 898 Check: 6145 Weight: 1.00 // 1 50 ENSP00000380948/1-769 MLGLRPPLLA LVGLLSLGCV LSQECTKFKV SSCRECIESG PGCTWCQKLN ENSBTAP00000022687/1-769 MLRQRPQLLL LAGLLALQSV LSQECTNYKV STCRDCIESG PGCAWCQKLN bmy_18495T0/1-569 MLRQRPLLLP LVGLLALRSV LSQECTKYKV STCRDCIESG PGCAWCQKLN ENSTTRP00000000898/1-750 MLRQRPQLLL LGSLLALRSV LSQECTKYRV STCRDCVESG PGCAWCQKLN BACU004355/1-716 MLHQRPLLLP LVGLLALRSV LSQECTKYKV STCRDCIESG PGCAWCQKLN 51 100 ENSP00000380948/1-769 FTGPGDPDSI RCDTRPQLLM RGCAADDIMD PTSLAETQED HNGGQKQLSP ENSBTAP00000022687/1-769 FTGQGEPDSI RCDTRAELLS KGCPADDIME PKSLAETRDS QAGSRKQLSP bmy_18495T0/1-569 FTGQGEPDST RCDTREQLLS KGCPSDDIMD PRSHATTQED QVGGQKQLSP ENSTTRP00000000898/1-750 FTGQGEPDST RCDTRHHLLP MGCATDDIID PRSPATT-DD QGGGQKALSP BACU004355/1-716 FTGQGEPDST RCDTREQLLS KGCPTDDIMD PRSHATTQED QVGGQKQLSP 101 150 ENSP00000380948/1-769 QKVTLYLRPG QAAAFNVTFR RAKGYPIDLY YLMDLSYSML DDLRNVKKLG ENSBTAP00000022687/1-769 QEVTLYLRPG QAVAFNVTFR RAKGYPIDLY YLMDLSYSMV DDLVNVKKLG bmy_18495T0/1-569 QKVTLYLRPG QAAAFNVTFQ RAKGYPIDLY YLMDLSYSML DDLINVKKLG ENSTTRP00000000898/1-750 RKVTLYLRPG QAAVFNVTFQ RAKGYPIDLY YLMDLSYSML DDLINVKKLG BACU004355/1-716 QKVTLYLRPG QAAAFNVTFQ RAKGYPIDLY YLMDLSYSML DDLINVKKLG 151 200 ENSP00000380948/1-769 GDLLRALNEI TESGRIGFGS FVDKTVLPFV NTHPDKLRNP CPNKEKECQP ENSBTAP00000022687/1-769 GDLLRALNGI TESGRIGFGS FVDKTVLPFV NTHPEKLRNP CPNKEKECQP bmy_18495T0/1-569 GDLLRALNEI TESGRIGFGS FVDKTVLPFV NTHPEKLRNP CPNKEKECQA ENSTTRP00000000898/1-750 GDLLRALNEI TESGRIGFGS FVDKTVLPFV NTHPEKLRNP CPNKEKECQA BACU004355/1-716 GDLLRALNEI TESGRIGFGS FVDKTVLPFV NTHPEKLRNP CPNKEKECQA 201 250 ENSP00000380948/1-769 PFAFRHVLKL TNNSNQFQTE VGKQLISGNL DAPEGGLDAM MQVAACP--- ENSBTAP00000022687/1-769 PFAFRHVLKL TDNSKQFETE VGKQLISGNL DAPEGGLDAM MQVAACP--- bmy_18495T0/1-569 PFAFRHVLKL TDNSNQFQTE VGKQLISGNL DAPEGGLDAM MQVAACPKTQ ENSTTRP00000000898/1-750 PFAFRHVLKL TDNSSQFRTE VGKQLISGNL DAPEGGLDAM MQVAACP--- BACU004355/1-716 PFAFRHVLKL TDNSNQFQTV VGKQLISGNL DAPEGGLDAM MQVAACP--- 251 300 ENSP00000380948/1-769 ---------- ---------- ---------- --------EE IGWRNVTRLL ENSBTAP00000022687/1-769 ---------- ---------- ---------- --------EE IGWRNVTRLL bmy_18495T0/1-569 EWGAHSPEAD TASSALAPPV CGSPLAKLRQ VTLPSPCQEE IGWRNVTRLL ENSTTRP00000000898/1-750 ---------- ---------- ---------- --------EE IGWRNVTRLL BACU004355/1-716 ---------- ---------- ---------- --------EE IGWRNVTRLL 301 350 ENSP00000380948/1-769 VFATDDGFHF AGDGKLGAIL TPNDGRCHLE DNLYKRSNEF DYPSVGQLAH ENSBTAP00000022687/1-769 VFATDDGFHF AGDGKLGAIL TPNDGRCHLE DNLYKSSNEF DYPSVGQLAH bmy_18495T0/1-569 VFATDDGFHF AGDGKLGAIL TPNDGRCHLE DNMYKSSNEF DYPSVGQLAH ENSTTRP00000000898/1-750 VFATDDGFHF AGDGKLGAIL TPNDGRCHLE DNMYKSSNEF DYPSVGQLAH BACU004355/1-716 VFATDDGFHF AGDGKLGAIL TPNDGRCHLE DNMYKSSNEF DYPSVGQLAH 351 400 ENSP00000380948/1-769 KLAENNIQPI FAVTSRMVKT YEKLTEIIPK SAVGELSEDS SNVVQLIKNA ENSBTAP00000022687/1-769 KLAESNIQPI FAVTKKMVKT YEKLTEIIPK SAVGELSEDS RNVVELIKNA bmy_18495T0/1-569 KLAESNIQPI FAVTKRMVKT YEKLTEIIPK SAVGELSDDS SNVVQLIKNA ENSTTRP00000000898/1-750 KLAESNIQPI FAVTKRMVAT YEKLTEIIPK SAVGELSDDS SNVVQLIKNA BACU004355/1-716 KLAESNIQPI FAVTKRMVKT YEKLTEIIPK SAVGELSDDS SNVVQLIKKA 401 450 ENSP00000380948/1-769 YNKLSSRVFL DHNALPDTLK VTYDSFCSNG VTHRNQPRGD CDGVQINVPI ENSBTAP00000022687/1-769 YNKLSSRVFL DHSTLPDTLK VTYDSFCSNG KSQVDQPRGD CDGVQINVPI bmy_18495T0/1-569 YNKLSSRVFL DHNTLPDTLK VTYDSFCSNG VSKVDQPRGD CDGVQINVP- ENSTTRP00000000898/1-750 YNKLSSRVFL DHNTLPDTLK VTYDSFCSNG VSKVDQPRGD CDGVQINVPI BACU004355/1-716 YNKLSSRVFL DHNTLPDTLK VTYDSFCSNG VSKVDQPRGD CDGVQINVPI 451 500 ENSP00000380948/1-769 TFQVKVTATE CIQEQSFVIR ALGFTDIVTV QVLPQCECRC RDQSRDRSLC ENSBTAP00000022687/1-769 TFQVKVTATE CIQQQSFTIR ALGFTDTVTV RVLPQCECQC RDASRDGSIC bmy_18495T0/1-569 GLSI------ -----SFGTT GPGLVPTSA- ---------- ------PSLA ENSTTRP00000000898/1-750 TFQVKVTATE CIQEQSFVIR ALGFTDTVTV RVLPQCKCRC RDASRDHNLC BACU004355/1-716 TFQVKVTATE CIQEQSFVIR ALGFTDTVTV RVLPQCKCRC RDASRDHSPC 501 550 ENSP00000380948/1-769 HGKGFLECGI CRCDTGYIGK NCECQTQGRS SQELEGSCRK DNNSIICSGL ENSBTAP00000022687/1-769 GGRGSMECGV CRCDAGYIGK NCECQTQGRS SQELEGSCRK DNSSIICSGL bmy_18495T0/1-569 GGRG------ ---------- ----RGQGRF AHYLS--LRA SSGTPTPCRA ENSTTRP00000000898/1-750 GGRGSMECGV CRCDAGYIGK NCECQTQGRS SQELEGSCRK DNGSIICSGL BACU004355/1-716 GGRGSMECGV CRCDAGYMGK NCECQTQGRS SQELEGSCRK DNSSIICSGL 551 600 ENSP00000380948/1-769 GDCVCGQCLC HTSDVPGKLI YGQYCECDTI NCERYNGQVC GGPGRGLCFC ENSBTAP00000022687/1-769 GDCICGQCVC HTSDVPNKKI YGQFCECDNV NCERYDGQVC GGEKRGLCFC bmy_18495T0/1-569 GAGLTPPCVC LLA------- ---------- ---------- ---------- ENSTTRP00000000898/1-750 GDCICGQCVC HTSDVPNKKI YGQFCECDNV NCERYDGQVC GGEKRGLCFC BACU004355/1-716 GDCICGQCVC HTSDVPNKKI YGRFCECDNV NCERYDGQVC GGEK------ 601 650 ENSP00000380948/1-769 GKCRCHPGFE GSACQCERTT EGCLNPRRVE CSGRGRCRCN VCECHSGYQL ENSBTAP00000022687/1-769 GTCRCDEQYE GSACQCLKST QGCLNLDGVE CSGRGRCRCN VCQCDPGYQP bmy_18495T0/1-569 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000898/1-750 GTCRCHNGHE GSACQCLKST KGCLNLDGVE CSGRGXXXXX XXXXXXXXXX BACU004355/1-716 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000380948/1-769 PLCQECPGCP SPCGKYISCA ECLKFEKGPF GKNCSAACPG LQLSNNPVKG ENSBTAP00000022687/1-769 PLCSECPGCP VPCAGFAPCT ECLKFDKGPF AKNCSAACGQ TKLLSSPVPG bmy_18495T0/1-569 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000898/1-750 XXXXXXXXXX XXXXXXXNCA ECLKFDQGPF AKNCSAACGE TKLLPRPLPG BACU004355/1-716 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000380948/1-769 RTCKERDSEG CWVAYTLEQQ DGMDRYLIYV DESRECVAGP NIAAIVGGTV ENSBTAP00000022687/1-769 RKCKERDSEG CWMTYTLVQR DGRDRYDVHV DDMLECVKGP NIAAIVGGTV bmy_18495T0/1-569 ---------- ---------- ---------- ---LECVKGP NIAAIVGSTV ENSTTRP00000000898/1-750 RTCKERDSEG CWMTYTL--- ---------- -----CMKGP NVAAIVGGTV BACU004355/1-716 ---------- ---------- ---------- -----CMKGP NVAAIVGSTV 751 800 ENSP00000380948/1-769 AGIVLIGILL LVIWKALIHL SDLREYRRFE KEKLKSQWNN ------DNPL ENSBTAP00000022687/1-769 GGVVLVGILL LVIWKALTHL SDLREYHRFE KEKLKSQWNN ------DNPL bmy_18495T0/1-569 AGVVLVGILL LGIWKVLTHV SDLREYKRFE KEKLKSQWNN ---------- ENSTTRP00000000898/1-750 AGVVLVGLLL LGIWKVLTHL SDLREYKRFE KEKLKSQWNN ------DNPL BACU004355/1-716 AGVVLVGILL LGIWKVLTHI SDLREYKRFE KEKLKSQWNN CLWCNTDKAC 801 850 ENSP00000380948/1-769 FKSATTTVMN P----KFAES ---------- ---------- ---------- ENSBTAP00000022687/1-769 FKSATTTVMN P----KFAES ---------- ---------- ---------- bmy_18495T0/1-569 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000898/1-750 FKSATTTVMN P----KFAES ---------- ---------- ---------- BACU004355/1-716 LDYPVTKILP PSSLCKLSSA RWGVCWVNFE ALIIALSVLG GALLLGVACC 851 900 ENSP00000380948/1-769 ---------- ---------- ---------- ---------- -------- ENSBTAP00000022687/1-769 ---------- ---------- ---------- ---------- -------- bmy_18495T0/1-569 ---------- ---------- ---------- ---------- -------- ENSTTRP00000000898/1-750 ---------- ---------- ---------- ---------- -------- BACU004355/1-716 CCCCCYGKRR SRRPDKSEER AAREREERRV RQEERLKCIS SDMKTYKL