KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:23 2014 Check: 00 .. Name: ENSP00000363694/1-900 Len: 1333 Check: 7005 Weight: 1.00 Name: ENSTTRP00000000391/1-856 Len: 1333 Check: 4646 Weight: 1.00 Name: ENSBTAP00000022699/1-800 Len: 1333 Check: 6678 Weight: 1.00 Name: bmy_18580T0/1-451 Len: 1333 Check: 2753 Weight: 1.00 Name: BACU007352/1-1035 Len: 1333 Check: 318 Weight: 1.00 // 1 50 ENSP00000363694/1-900 MLRFLRRTFG RRSMQRYARG AAGRGAAGLG DERDGGPRGG PAAAASSSAL ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000363694/1-900 PAAPGGSVFP AGGGPLLTGG AAVHISAAGA AKATLYCRVF LLDGTEVSVD ENSTTRP00000000391/1-856 ---------- ------LMGC AAVHISAAGA SKTTLYCRVF LLDGTEVSVD ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000363694/1-900 LPKHAKGQDL FDQIVYHLDL VETDYFGLQF LDSAQVAHWL DHAKPIKKQM ENSTTRP00000000391/1-856 LPKHAKGQDL FDQIVYHLDL VETDYFGLQF LDSAQAAHWL DHSKPIKKQM ENSBTAP00000022699/1-800 --KHAKGQDL FDQIVYHLDL VETDYFGLQF LDSAQVPHWL DHSKPIKKQM bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 ---------- ---------- ---------- -------HWL DHSKPIKKQM 151 200 ENSP00000363694/1-900 KIGPAYALHF RVKYYSSEPN NLREEFTRYL FVLQLRHDIL SGKLKCPYET ENSTTRP00000000391/1-856 KIGPAYALHF RVKYYSSEPN NLREEFTRYL FVLQLRHDIL SGKLKCPYET ENSBTAP00000022699/1-800 KIGPAYALHF RVKYYSSEPN NLREEFTRYL FVLQLRHDIL SGKLKCPYET bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 KIGPAYALHF RVKYYSSEPN NLREEFTR-- ---------- ---------- 201 250 ENSP00000363694/1-900 AVELAALCLQ AELGECELPE HTPELVSEFR FIPNQTEAME FDIFQRWKEC ENSTTRP00000000391/1-856 AVELAALCLQ AELGECELPE HTPELVSEFR FIPNQTEAME FDIFQRWKEC ENSBTAP00000022699/1-800 AVELAALCLQ AELGECELPE HTPELVSEFR FIPNQTEAME FDIFQRWKEC bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000363694/1-900 RGKSPAQAEL SYLNKAKWLE MYGVDMHVVR GRDGCEYSLG LTPTGILIFE ENSTTRP00000000391/1-856 RGKSPAQAEL SYLNKAKWLE MYGVDMHVVR GRDGCEYSLG LTPTGILIFE ENSBTAP00000022699/1-800 RGKSPAQAEL SYLNKAKWLE MYGVDMHVVR GRDGCEYSLG LTPTGILIFE bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000363694/1-900 GANKIGLFFW PKITKMDFKK SKLTLVVVED DDQGREQEHT FVFRLDSART ENSTTRP00000000391/1-856 GANKIGLFFW PKITKMDFKK SKLTLVVVED DDQGREQEHT FVFRLDSART ENSBTAP00000022699/1-800 GANKIGLFFW PKITKMDFKK SKLTLVVVED DDQGREQEHT FVFRLDSART bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 ---------- PKITKMDFKK SKLTLVVVED DDQGREQEHT FVFRLDSART 351 400 ENSP00000363694/1-900 CKHLWKCAVE HHAFFRLRTP GNSKSNRSDF IRLGSRFRFS GRTEYQATHG ENSTTRP00000000391/1-856 CKHLWKCAVE HHAFFRLRTP GNSKSNRSDF IRLGSRFRFS GRTEYQATHG ENSBTAP00000022699/1-800 CKHLWKCAVE HHAFFRLRTP GNSKSNRSDF IRLGSRFRFS GRTEYQATHG bmy_18580T0/1-451 ----WTGISR LSAFL----- ------NPDF YTL------- ---------- BACU007352/1-1035 CKHLWKCAVE HHAFFRLRTP GNSKSNRSDF IRLGSRFRFS GRTEYQATHG 401 450 ENSP00000363694/1-900 SRLRRTSTFE RKPSKRYPSR RHSTFKASNP VIAAQLCSKT NPEVHNYQPQ ENSTTRP00000000391/1-856 ARLRRTSTFE RKPSKRYPSR RHSTFKASNP MIAAQFCSKT NPEVHNYQPQ ENSBTAP00000022699/1-800 ARLRRTSTFE RKPSKRYPSR RHSTFKASNP VIAAQFCSKT NPEVHNYQPQ bmy_18580T0/1-451 ---------- ---------- ---------- ------CS-- ---------- BACU007352/1-1035 ARLRRTSTFE RKPSKRYPSR RHSTFKASNP MIAAQFCSKT NPEVHNYQPQ 451 500 ENSP00000363694/1-900 YHPNIHPSQP RWHPHSPNVS YPLPSPVLSS SDRLPFGIEE NGGTPFLTAA ENSTTRP00000000391/1-856 YHPNLHPSQP RWHPHSPNIS YPLPSPGLSS ADRLPFGLEE NGGTPFATKA ENSBTAP00000022699/1-800 YHPNLHPGQP RWHPHSPNVS YPLPSPGLSS SDRLPFGLEE NGGTPFTAKA bmy_18580T0/1-451 ---------- ---------- YPLPSPGLSS SDRLPFGLEE NGGTPFATKA BACU007352/1-1035 YHPNLHPSQP RWHPHSPNIS YPLPSPGLSS SDRLPFGLEE NGGTLFATKA 501 550 ENSP00000363694/1-900 SGRHHHQHQH QHQHQHHSNY SLSLTLENKE GPLRSPNSSS KSLTKLSPGT ENSTTRP00000000391/1-856 SGRHHH---H HHQHQHHTNY GLSLTLENKE GPLRSPNSSS KSLTKLSPGT ENSBTAP00000022699/1-800 SGRHHH---H HHQHQHHTNY GLSLTLENKE GLSRSPNSSS KSLTKLSPGT bmy_18580T0/1-451 SGRHHH---H HHQHQHHANY GLSLTLENKE GPLRSPNSSS KSLTKLSPGA BACU007352/1-1035 SGRHHH---H HHQHQHHANY GLSLTLENKE GPLRSPNSSS KSLTKLSPGA 551 600 ENSP00000363694/1-900 PALFSEAAAH LKKLELETVK AAGPWPPLHI NINKAEEKKV SEKTLQTPLL ENSTTRP00000000391/1-856 PALFSEAAAH LKKLELETVK AAGPWPALHI NINKAEEKKV SEKTLQTPLL ENSBTAP00000022699/1-800 PALFSEAAAH LKKLELETVK PAGPWPALHI NINKAEEKKV SEKTLQTPLL bmy_18580T0/1-451 PALFSEAAAH LKKLELETVK AAGPWPALHI NINKAEEKKV SEKTLQTPLL BACU007352/1-1035 PALFSEAAAH LKKLELETVK AAGPWPALHI NINKAEEKKV SEKTLQTPLL 601 650 ENSP00000363694/1-900 PSPVADHVKC NILKAQLENA SRVNI-QGGK EESPFVNINK KSSLQDASVR ENSTTRP00000000391/1-856 PSPVADHVKC NILKAQLENA SRASA-QVGK EESTFVNINK KSSLQDANVR ENSBTAP00000022699/1-800 PSPVADHVKC NILKAQLENA SRVSAQQVGK EESTFVNINK KSTLQDANVR bmy_18580T0/1-451 PSPVADHVKC NILKAQLENA SRASA-QVGK EESTFVNINK KSSLQDANVR BACU007352/1-1035 PSPVADHVKC NILKAQLENA SRASA-QVGK EESTFVNINK KSSLQDANVR 651 700 ENSP00000363694/1-900 SPIPIRVETA QPAVEKPEIK PPRVRKLTRQ YSF------- ---------- ENSTTRP00000000391/1-856 SL-PIRVETT QPAAEKPEIK PPRVRKLTRQ YSF------- ---------- ENSBTAP00000022699/1-800 SPIPIRVETT QPAMEKPEIK PPRVRKLTRQ YSF------- ---------- bmy_18580T0/1-451 SPIPIRVETT QPAMEKPEIK PPRVRKLTRQ YSF------- ---------- BACU007352/1-1035 SPIPIRVETT QPAVEKPEIK PPRVRKLTRQ YSLIQRIQGE NRKLSEQLQQ 701 750 ENSP00000363694/1-900 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 KIENDQPHQA TDLESEDVIP DSPITTFSFS GANRLRRKEN LHFQYVEQTH 751 800 ENSP00000363694/1-900 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 TKPQHSGCAH ELRKLPKSST HPQHKHNEHE ILVADTCDQS QAPVANTHGK 801 850 ENSP00000363694/1-900 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 SRYPPDNLAT VAAETLGLSV QDESESQGPM SPVGDELYHC LEGDHKKPFE 851 900 ENSP00000363694/1-900 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 ESRRNSEDSL RFSDSNSKTP PQEELTTRVL INKTTSEQDS IDHIKDTVTD 901 950 ENSP00000363694/1-900 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 KDKPVVPLKS LGGRTKRKKI EEESEDEVSC PQASFDKENA FPFPPDSHSY 951 1000 ENSP00000363694/1-900 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 MNGDYVMDKP LDLSDRFSAI QRQEKSQGSE NSKIGFRQVT LYEVLKPVPK 1001 1050 ENSP00000363694/1-900 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022699/1-800 ---------- ---------- ---------- ---------- ---------- bmy_18580T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007352/1-1035 GSSSSRKALS GSCGLTKDSP EEPSSLQESL LQSLSKSLGN KTLLQIKEEN 1051 1100 ENSP00000363694/1-900 ---------- ---------- ---------- ---------D EDDLPPDLAE ENSTTRP00000000391/1-856 ---------- ---------- ---------- ---------D EDDLPPDLAE ENSBTAP00000022699/1-800 ---------- ---------- ---------- ------NRSD EDDLPPDLAE bmy_18580T0/1-451 ---------- ---------- ---------- ------NRSD EDDLPPDLAE BACU007352/1-1035 SIFKIPLRPH ESLETENLFD DMKGAGSREP IKIKTSNRSD EDDLPPDLAE 1101 1150 ENSP00000363694/1-900 AVGVTTSTTT NTTTA-ATQV SVPLPSPKVQ NVSSPHKSEG KGLLSPGAKS ENSTTRP00000000391/1-856 AAGATTTPAM ATTMATTTQV SVPLASPKVH KLSSPQNSEG KGQLSPGAKS ENSBTAP00000022699/1-800 AVGATTTPTT ATTTATTTQV SMPLLSPKVH KISSPQNSEG KGQLSPGAKS bmy_18580T0/1-451 AAGATTTPAM ATTMATTTQV SVPLASPKVH KVSSPQNSEG KGQLSPGAKS BACU007352/1-1035 AAGATTTPAM ATTMATTTQV SVPLASPKVH KVSSPQNSEG KGQLSPGAKS 1151 1200 ENSP00000363694/1-900 PSDRGGAFTL EPGDLLMDFT EATPLAEPAS NPHCAHSRCS PPLSLPMKEE ENSTTRP00000000391/1-856 PSDRGGAFTL EPGDLLMDFT EATPLAEPAS APHCAHSRCS PPLSLPMKEE ENSBTAP00000022699/1-800 PSNRRGAFTL EPGDLLMDFT EATPLAEPAS APHCAHSRCS PPLSLPMKEE bmy_18580T0/1-451 PSDRGGAFTL EPGDLLMDFT EATPLAEPAS APHCAHSRCS PPLSLPMKEE BACU007352/1-1035 PSDRGGVFTL EPGDLLMDFT EATPLAEPAS APHCAHSRCS PPLSLPMKEE 1201 1250 ENSP00000363694/1-900 TTGVCMYPPI KTRLIKTFPV DTMNPFPDTF TTGPQFTADF RDSKLQCCPG ENSTTRP00000000391/1-856 TTGVCMHPPI KTRLIKTFPA DTVTPFPDPF ITGPQFTADF RDSKLQCCPG ENSBTAP00000022699/1-800 TTGVCMHPPI KTRLIKTFPA DTVTPFPDPF ITGPQFTADF RDSKVQCCPG bmy_18580T0/1-451 TTGVCMHPPI KTRLIKTFPA DTVTPFPDPF ITGPQFTADF RDSKLQCCPG BACU007352/1-1035 TTGVCMHPPI KTRLIKTFPA DTVTPFPDPF ITGPQFTADF RDSKLQCCPG 1251 1300 ENSP00000363694/1-900 PTSPLIPAAT LRPLTETVST VQTIYTTRKP VSLAASAETL RQELEREKMM ENSTTRP00000000391/1-856 QSSPLIPAAT LRPLTETVST VQTIYTSEAC FSSGQCRDAP AGTGERENDE ENSBTAP00000022699/1-800 QSSPLIPAAT LRPLTEAVST VQTIYTIRKP VSPATSAETL RQELEREKMM bmy_18580T0/1-451 QSSPLIPAAT LRPLTETVST VQTIYTIRKP VSPVASAETL RQELEREKMM BACU007352/1-1035 QSSPLIPAAT LRPLTETVST VQTIYTIRKP VSPVASAETL RQELEREKMM 1301 1350 ENSP00000363694/1-900 K--------- ---------- ---RLLMTEL --- ENSTTRP00000000391/1-856 KTVDDRTVKF SPWCLEDGMV PSVRFLSSGF VSL ENSBTAP00000022699/1-800 K--------- ---------- ---RLLMTEL --- bmy_18580T0/1-451 K--------- ---------- ---RLLMTEL --- BACU007352/1-1035 K--------- ---------- ---RLLMTEL ---