KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:24 2014 Check: 00 .. Name: BACU009005/1-560 Len: 644 Check: 1567 Weight: 1.00 Name: ENSP00000380019/1-577 Len: 644 Check: 3946 Weight: 1.00 Name: ENSBTAP00000022702/1-575 Len: 644 Check: 9840 Weight: 1.00 Name: bmy_11493T0/1-565 Len: 644 Check: 395 Weight: 1.00 Name: ENSTTRP00000011147/1-567 Len: 644 Check: 8485 Weight: 1.00 // 1 50 BACU009005/1-560 ---------- ---------- ----MQSFL- ----QLLRGS GGAGLP---- ENSP00000380019/1-577 MEESHFNSNP YFWPSIPTVS GQIENTMFIN KMKDQLLPEK G-CGLAPPHY ENSBTAP00000022702/1-575 MEESHFNSNP YFWPSIPTVS GQIENTMFIN KMKDQLLPEK G-CGLAPPHY bmy_11493T0/1-565 MEESHFNSNP YFWPSIPTVS GQIENTMFIN KMKDQLLPEK G-CGLAPPHY ENSTTRP00000011147/1-567 MEESHFNSNP YFWPSIPTVS GQIENTMFIN KMKDQLLPEK G-CGLAPPHY 51 100 BACU009005/1-560 -----LAELV TLAGRLCREV QDDPAQVQPL VTAVLESQLR LYLLDNADVA ENSP00000380019/1-577 PTLLTVPASV SLPSGISMDT ESKSDQLTPH SQASVTQNIT VVPVPSTGL- ENSBTAP00000022702/1-575 PTLLTVPASV SLPSGISMDT ESKSDQLTPH SQASVTQNIT VVPVPSTGL- bmy_11493T0/1-565 PTLLTVPASV SLPSGISMDT ESKSDQLTPH SQASVTQNIT VVPVPSTGL- ENSTTRP00000011147/1-567 PTLLTVPASV SLPSGISMDT ESKSDQLTPH SQASVTQNIT VVPVPSTGL- 101 150 BACU009005/1-560 QVCARVLAQQ EQYRAACQLL EGCRVPGGSL KLVQLWNDIH YRLVMKRLGV ENSP00000380019/1-577 -MTAGVSCSQ R-WRR----- EGSQSRGPGL VITSPSGSL- ---------V ENSBTAP00000022702/1-575 -MTAGVSCSQ R-WRR----- EGSQSRGPGL VITSPSGSL- ---------V bmy_11493T0/1-565 -MTAGVSCSQ R-WRR----- EGSQSRGPGL VITSPSGSL- ---------V ENSTTRP00000011147/1-567 -MTAGVSCSQ R-WRR----- EGSQSRGPGL VITSPSGSL- ---------V 151 200 BACU009005/1-560 ATLTPVQKFR CRKRNPPPAS LCPDGLKN-- --RNFPREVR QKLQDFASG- ENSP00000380019/1-577 TTASSAQTFP IS--APMIVS ALPPGSQALQ VVPDLSKKVA STLTEEGGGG ENSBTAP00000022702/1-575 TTATSAQTFP IS--APMIVS ALPPGSQALQ VVPDLSKKVA STLTEEGGGG bmy_11493T0/1-565 TTASSAQTFP IS--APMIVS ALPPGSQALQ VVPDLSKKVA STLTEEGGGG ENSTTRP00000011147/1-567 TTASSAQTFP IS--APMIVS ALPPGSQALQ VVPDLSKKVA STLTEEGGGG 201 250 BACU009005/1-560 --------VS TNPSKAEREH LASETRLTTE QVYNWFANYR RRQRALVQRA ENSP00000380019/1-577 GGGGG--SVA PKPPRGRKKK ---------- ---------R MLESGLPEMN ENSBTAP00000022702/1-575 GGGGGGTVVA AKPPRGRKKK ---------- ---------R MLESGLPEMN bmy_11493T0/1-565 GGGGG--TVA AKPPRGRKKK ---------- ---------R MLESGLPEMN ENSTTRP00000011147/1-567 GGGGG--TVA AKPPRGRKKK ---------- ---------R MLESGLPEMN 251 300 BACU009005/1-560 APARDSAEDR TAREAVPRPP QPRGQPHLGS GCVDRPQWSG PEESGSAQTQ ENSP00000380019/1-577 DPYVLSPEDD DDH------- QKDGKTYRCR MC--SLTFYS KSEMQIHSKS ENSBTAP00000022702/1-575 DPYVLSPEDD DDH------- QKDGKTYRCR MC--SLTFYS KSEMQIHSKS bmy_11493T0/1-565 DPYVLSPEDD DDH------- QKDGKTYRCR MC--SLTFYS KSEMQIHSKS ENSTTRP00000011147/1-567 DPYVLSPEDD DDH------- QKDGKTYRCR MC--SLTFYS KSEMQIHSKS 301 350 BACU009005/1-560 ETTQGPWEPL VLTPDFSGDE TMPKSLAPSD TLDPSLGAPE SWLTSLALAS ENSP00000380019/1-577 HTETKPHKCP HCSKTFANSS YLAQHIRIHS GAKP------ -YSCNFCEKS ENSBTAP00000022702/1-575 HTETKPHKCP HCSKTFANSS YLAQHIRIHS GAKP------ -YSCNFCEKS bmy_11493T0/1-565 HTETKPHKCP HCSKTFANSS YLAQHIRIHS GAKP------ -YSCNFCEKS ENSTTRP00000011147/1-567 HTETKPHKCP HCSKTFANSS YLAQHIRIHS GAKP------ -YSCNFCEKS 351 400 BACU009005/1-560 SKEVS-FQTR QLIHSHGLDL TMRAADAPLA ----VSIAAL GEPSATGFAD ENSP00000380019/1-577 FRQLSHLQQH TRIHSKMHTE TIKPHKCPHC SKTFANTSYL AQHLRIHSGA ENSBTAP00000022702/1-575 FRQLSHLQQH TRIHSKVHTE IIKPHKCPHC SKTFANTSYL AQHLRIHSGA bmy_11493T0/1-565 FRQLSHLQQH TRIHSKMHTE TIKPHKCPHC SKTFANTSYL AQHLRIHSGA ENSTTRP00000011147/1-567 FRQLSHLQQH TRIHSKMHTE TIKPHKCPHC SKTFANTSYL AQHLRIHSGA 401 450 BACU009005/1-560 PP--SSNAQS AYLEEGPGTS GGRVEPQASG FLVPQPPLQA P--EFTLTQS ENSP00000380019/1-577 KPYNCSYCQK AFRQLSHLQQ HTRIHTGDRP YKCAHPGCEK AFTQLSNLQS ENSBTAP00000022702/1-575 KPYNCSYCQK AFRQLSHLQQ HTRIHTGDRP YKCAHPGCEK AFTQLSNLQS bmy_11493T0/1-565 KPYNCSYCQK AFRQLSHLQQ HTRIHTGDRP YKCAHPGCEK AFTQLSNLQS ENSTTRP00000011147/1-567 KPYNCSYCQK AFRQLSHLQQ HTRIHTGDRP YKCAHPGCEK AFTQLSNLQS 451 500 BACU009005/1-560 TPELAPAPPA FPGPES---- --PMELGQPM PSSQIHGLAI RELILLWRKN ENSP00000380019/1-577 HRRQHNKDKP FKCHNCHRAY TDAASLEVHL STHTVKHAKV YTCTICSRAY ENSBTAP00000022702/1-575 HRRQHNKDKP FKCHNCHRAY TDATSLEVHL STHTVKHAKV YTCTICSRAY bmy_11493T0/1-565 HRRQHNKDKP FKCHNCHRAY TDATSLEVHL STHTVKHAKV YTCTICSRAY ENSTTRP00000011147/1-567 HRRQHNKDKP FKCHNCHRAY TDATSLEVHL STHTVKHAKV YTCTICSRAY 501 550 BACU009005/1-560 TTL-YVDDET SSDSGALRVA PDLSEKTALT LTEEGGGTVA AKNPWGREKK ENSP00000380019/1-577 TSETYLMKHM RKHN-----P PDLQQQVQAA AAAAAV---- AQAQAQAQAQ ENSBTAP00000022702/1-575 TSETYLMKHM RKHN-----P PDLQQQVQAA AAAAAVAQAQ AQAQAQAQAQ bmy_11493T0/1-565 TSETYLMKHM RKHN-----P PDLQQQVQAA AAAAAV---- ----AQAQAQ ENSTTRP00000011147/1-567 TSETYLMKHM RKHN-----P PDLQQQVQAA AAAAAV---- --AQAQAQAQ 551 600 BACU009005/1-560 RMLESGLPLS SALTMMTTIR ESRTCS---- ----LTFYSK AEMRMHSRSH ENSP00000380019/1-577 AQAQAQAQAQ AQASQASQQQ QQQQQQQQQQ QQQPPPHFQS PGAAPQGGGG ENSBTAP00000022702/1-575 AQAQAQAQAQ AQASQASQQP QQQQPQ---- ----PPHFQS PGAAPQGGGG bmy_11493T0/1-565 AQAQAQAQAQ AQASQASQQP QQQPPQ---- ----PPHFQS PGAAPQGGGG ENSTTRP00000011147/1-567 AQAQAQAQAQ AQASQASQQP QQQPPQ---- ----PPHFQS PGAAPQGGGG 601 650 BACU009005/1-560 NETKPHKCPR CC---SPSPA AATWPSTRVS TQGPSPEM-- ---- ENSP00000380019/1-577 GDSNPNPPPQ CSFDLTPYKT AEHHKDICLT VTTSTIQVEH LASS ENSBTAP00000022702/1-575 GDSNPNPPPQ CSFDLTPYKT AEHHKDICLT VTTSTIQVEH LASS bmy_11493T0/1-565 GDSNPNPPPQ CSFDLTPYKT AEHHKDICLT VTTSTIQVEH LASS ENSTTRP00000011147/1-567 GDSNPNPPPQ CSFDLTPYKT AEHHKDICLT VTTSTIQVEH LASS