KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:18:25 2014 Check: 00 .. Name: ENSTTRP00000002942/1-1236 Len: 1479 Check: 4106 Weight: 1.00 Name: ENSBTAP00000022706/1-1193 Len: 1479 Check: 8360 Weight: 1.00 Name: BACU016689/1-1108 Len: 1479 Check: 198 Weight: 1.00 Name: bmy_02591T0/1-1425 Len: 1479 Check: 2485 Weight: 1.00 // 1 50 ENSTTRP00000002942/1-1236 MAETASGTGG TSLEGERGKR PPPDGEPAAP ASGVLDKLFG KRLLQVGRYL ENSBTAP00000022706/1-1193 MAEATSGAGG TSLEGERGKR PPPEGEPAAP ASGVLDKLFG KRLLQVGRYL BACU016689/1-1108 MAEAASGAGG TSLEGERGKR PPPDGEPAAP ASGVLDKLFG KRLLQVGRYL bmy_02591T0/1-1425 MAEAASGAGG TSLEGERGKR PPPDGEPAAP ASGVLDKLFG KRLLQVGRYL 51 100 ENSTTRP00000002942/1-1236 VSHKAWMKTV PTENCDVLMT FPDTTDDHTL LWLLNHIRVG IPELIVQIRH ENSBTAP00000022706/1-1193 VSHKAWMKTV PTENCDVLMT FPDTTDDHTL LWLLNHIRVG IPELIVQVRH BACU016689/1-1108 VSHKAWMKTV PTENCDVLMT FPAPHPSKHQ LRGLATLHLS L--------- bmy_02591T0/1-1425 VSHKAWMKTV PTENCDVLMT FPDTTDDHTL LWLLNHIRVG IPELIVQVRH 101 150 ENSTTRP00000002942/1-1236 HRHTRAYAFF VTATYESLLR GADELGLRKA VKTEFGGGTR GFSCEEDFIY ENSBTAP00000022706/1-1193 HRHTRAYAFF VTATYESLLR GADELGLRKA VKAEFGGGTR GFSCEEDFIY BACU016689/1-1108 ---------- -TAT--SLLR GADELGLRKA VKTEFGGGTR GFSCEEDFIY bmy_02591T0/1-1425 HRHTRAYAFF VTAT---LLR GADELGLRKA VKTEFGGGTR GFSCEEDFIY 151 200 ENSTTRP00000002942/1-1236 ENVESELRFF TSQERQSIIR FWLQNLRAKQ GEALHNVRFL EDQPIIPELA ENSBTAP00000022706/1-1193 ENVESELRFF TSQERQSIIR FWLQNLRAKQ GEALHNVRFL EDQPIIPELA BACU016689/1-1108 ENVESELRFF TSQERQSIIR FWLQNLRAKQ GETLHNVRFL DDQPIIPELA bmy_02591T0/1-1425 ENVESELRFF TSQERQSIIR FWLQNLRAKQ GEALHNVRFL DDQPIIPELA 201 250 ENSTTRP00000002942/1-1236 ARGIIQQVFP VHEQRILNRL MKSWVQAVCE NQPLDEICDY FGVKIAMYFA ENSBTAP00000022706/1-1193 ARGIIQQVFP VHEQRILNRL MKSWVQAVCE NQPLDEICDY FGVKIAMYFA BACU016689/1-1108 ARGIIQQVFP VHEQRILNRL MKSWVQAVCE NQPLDEICDY FGVKIAMYFA bmy_02591T0/1-1425 ARGIIQQVFP VHEQRILNRL MKSWVQAVCE NQPLDEICDY FGVKIAMYFA 251 300 ENSTTRP00000002942/1-1236 WLGFYTSAMV YPAVFGSVLY TFTEADQTSR DVSCVVFALF NVVWSTLFLE ENSBTAP00000022706/1-1193 WLGFYQSIID ---------- ---------- ----MEFEGL GRVWD----- BACU016689/1-1108 WLGFYTSAMV YPAVFGSVLY TFTEADQTSR DVSCVVFALF NVVWSTLFLE bmy_02591T0/1-1425 WLGFYTSAMV YPAVFGSVLY TFTEADQTSR DVSCVVFALF NVVWSTLFLE 301 350 ENSTTRP00000002942/1-1236 EWKRRGAELA YKWGTLDSPG EAVEEPRPQF RXXXXXXXXX XXXXXXXXXX ENSBTAP00000022706/1-1193 ----RG---- -------SPS DLVLGHAPTL CQGVRRISPV TQAEEFYYPP BACU016689/1-1108 EWKRRGAELA YKWGTLDSPG EAVEEPRPQF -RGVRRISPV TRAEEFYYPP bmy_02591T0/1-1425 EWKRRGAELA YKWGTLDSPG EAVEEPRPQF -RGVRRISPV TRAEEFYYPP 351 400 ENSTTRP00000002942/1-1236 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022706/1-1193 WKRLLFQMLV SLPLCLTCLA CVFLLMLGCF QLQELVLSVK GLPRLARFLP BACU016689/1-1108 WKRLLFQLL- ---------- ---------- ---ELVLSVK GLPRLARFLP bmy_02591T0/1-1425 WKRLLFQLLV SLPLCLTCLA CVFLLMLGCF QLQELVLSVK GLPRLARFLP 401 450 ENSTTRP00000002942/1-1236 XXXXXXXXXX XXRGSKKRAL GFNDM----- ---------- ---------- ENSBTAP00000022706/1-1193 KVMLALLVSA SAEGYKKLAV WLNDM----- ---------- ---------- BACU016689/1-1108 KVTLALLVSA SAEGYKKLAV WLNDM----- ---------- ---------- bmy_02591T0/1-1425 KVMLALLVSA SAEGYKKLAI WLNDMGMPCE GRSHCPPPRR KGSAALRGAC 451 500 ENSTTRP00000002942/1-1236 ---------- ------ENFR LESACEKHLI IKVVLFQFVN SYLSLFYIGF ENSBTAP00000022706/1-1193 ---------- ------ENYR LESAYEKHLI IKVVLFQFVN SYLSLFYIGF BACU016689/1-1108 ---------- ------ENYR LESAYEKHLI IKVVLFQFVN SYLSLFYIGF bmy_02591T0/1-1425 CPWGSGPPPH SPPWPPENYR LESAYEKHLI IKVVLFQFVN SYLSLFYIGF 501 550 ENSTTRP00000002942/1-1236 YLKDMERLKE ---------- ---------- ---------- ---------- ENSBTAP00000022706/1-1193 YLKDMERLKE ---------- ---------- ---------- ---------- BACU016689/1-1108 YLKDMERLKE LLIVLSLSQS LERQLWAVLV PLAALRFRLL LLSLRGLLLV bmy_02591T0/1-1425 YLKDMERLKE ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000002942/1-1236 ----MLATLL ITRQFLQNVR EVLQPHLYRR LGRGEIGLRA AWELARALLG ENSBTAP00000022706/1-1193 ----MLATLL ITRQFLQNVR EVLQPHLYRR LGRGELGLRA AWELARALLG BACU016689/1-1108 ARAKMLATLL ITRQFLQNIR EVLQPHLYRR LGRGELGLRA AWELARALLG bmy_02591T0/1-1425 ----MLATLL ITRQFLQNVR EVLQPHLYRR LGRGELGLRA AWELARALLG 601 650 ENSTTRP00000002942/1-1236 LLSLRRPA-R HLEAQAEEGV GGSSGGGGRR CLSGACGAPE EEEEATMERR ENSBTAP00000022706/1-1193 LLSLWRPARR HLEPPAEEGG GGSSSGGGRR CLSGGCGAPE EEEEAAVERR BACU016689/1-1108 LLSLRRPA-R HLEPQAEEGV GGSSGGGGRR CLSGACGAPE EEEEATMERR bmy_02591T0/1-1425 LLSLRRPA-R HLEPQAEEGV GGSSGGGGRR CLSGACGAPE EEEEATMERR 651 700 ENSTTRP00000002942/1-1236 PAGEGGEVGD GPRGGR-EEE EDEEEEEDEE EEDEEEEGEE GGLLDCGLRL ENSBTAP00000022706/1-1193 PAGEGGEVGD GPRGGR-EEE DEEEEEEDEE EEDEDEEGEE GGLLDCGLRL BACU016689/1-1108 PAGEGGEVGD GPRGGREEEE EDEDEDEDEE EEEEEDEGEE GGLLDCGLRL bmy_02591T0/1-1425 PAGEGGEVGD GPRGGREEEE EDEDEDEDEE EEEDEEEGEE GGLLDCGLRL 701 750 ENSTTRP00000002942/1-1236 KKVSFAERGA GRRRLGPSPE ALLEEGSPTM VEKGLEAGVF TLAEEDDEAE ENSBTAP00000022706/1-1193 KKVSFAERGA GRRRPGPSQE ALLEEGSPTM VEKGLEPGVF TLAEEDDEAE BACU016689/1-1108 KKVSFAERGA GRRRLGPSPE ALLEEGSPTM VEKGLEAGVF TLAEEDDEAE bmy_02591T0/1-1425 KKVSFAERGA GRRRLGPSPE ALLEEGSPTM VEKGLEAGVF TLAEEDDEAE 751 800 ENSTTRP00000002942/1-1236 GAPSSPERE- PPAVLLRRAR GEGRDQGPDG GPDPEPGLGD SSRKQRRQNR ENSBTAP00000022706/1-1193 GAPSSPERET PPAVLLRRAG GEGRDQGPDG GPDPEPGSGD SARKQRRQNR BACU016689/1-1108 GAPSSPERE- PPAVLLRRAR GEGRDQGPDG GPDPEPGLGD SARKQRRQNR bmy_02591T0/1-1425 GAPSSPERE- PPAVLLCRPR GEGRDQGPDG GPDPEPGLGD SARKQRRQNR 801 850 ENSTTRP00000002942/1-1236 SSWIDPPEEE HSAQLTQAEL ESCMKKYEDT FQDYQEMFVQ FGYVVLFSSA ENSBTAP00000022706/1-1193 SSWIDPPEEE HSSQLTQAEL ESCMKKYEDT FQDYQEMFVQ FGYVVLFSSA BACU016689/1-1108 SSWIDPPEEE HSAQLTQAEL ESCMKKYEDT FQDYQEMFVQ FGYVVLFSSA bmy_02591T0/1-1425 SSWIDPPEEE HSAQLTQAEL ESCMKKYEDT FQDYQEMFVQ FGYVVLFSSA 851 900 ENSTTRP00000002942/1-1236 FPLAALCALI NNLIEIRSDA LKLCTGLQRP FGQRVESIGQ WQKVMEVMGV ENSBTAP00000022706/1-1193 FPLAALCALI NNLIEIRSDA LKLCTGLQRP FGQRVESIGQ WQKVMEVMGV BACU016689/1-1108 FPLAALCALI NNLIEIRSDA LKLCTGLQRP FGQRVESIGQ WQKVMEVMGV bmy_02591T0/1-1425 FPLAALCALI NNLIEIRSDA LKLCTGLQRP FGQRVESIGQ WQKVMEVMGV 901 950 ENSTTRP00000002942/1-1236 LAIVVNCYLI GQCGQLQRLF PWLSPEAAIV SVVVLEHFAL LLKYLIHVAI ENSBTAP00000022706/1-1193 LAIVVNCYLI GQCGQLQRLF PWLSPEAAIV SVVVLEHFAL LLKYLIHVAI BACU016689/1-1108 LAIVVNCYLI GQCGQLQRLF PWLSPEAAIV SVVVLEHFAL LLKYLIHVAI bmy_02591T0/1-1425 LAIVVNCYLI GQCGQLQRLF PWLSPEAAIV SVVVLEHFAL LLKYLIHVAI 951 1000 ENSTTRP00000002942/1-1236 PDIPGWVAEE MAKLEYQRRE AFKRHERQAQ HRYQQQQRRR REEEERQRHA ENSBTAP00000022706/1-1193 PDIPGWVAEE MAKLEYQRRE AFKRHERQAQ HRYQQQQRRR REEEERQRHA BACU016689/1-1108 PDIPGWVAEE MAKLEYQRRE AFKRHERQAQ HRYQQQQRRR REEEERQRHA bmy_02591T0/1-1425 PDIPGWVAEE MAKLEYQRRE AFKRHERQAQ HRYQQQQRRR REEEERQRHA 1001 1050 ENSTTRP00000002942/1-1236 EHHARRERDA SGREEARAEG SGLDPAAPEK ASAKAKGSGA AGGHGPERPK ENSBTAP00000022706/1-1193 EHHARRERDA SGREEARAEG SGLDPAAPEK TSAKAKGSG- AGGHGPERPK BACU016689/1-1108 EHHARRERDA SGREEARAEG PGLDPAAPEK ASAKAKGSGA AGGHGPERPK bmy_02591T0/1-1425 EHHARRERDA SGREEARAEG SGLDPAAPEK ASAKAKGSGA AGGHGPERPK 1051 1100 ENSTTRP00000002942/1-1236 RPGSLLAPNN VMKLKQIIPL QGKFLSSGA- ASSLAGGGAN LTARPPPAPS ENSBTAP00000022706/1-1193 RPGSLLAPNN VMKLKQIIPL QGKFLSSGAS SSSPAGTGAN LTTRPTPAQS BACU016689/1-1108 RPGSLLAPNN VMKLKQIIPL QGKFLSSGA- ASSLAGAGAN LTARPPPAPS bmy_02591T0/1-1425 RPGSLLAPNN VMKLKQIIPL QGKFLSSGA- ASSLAGAGAN LTARPPPAPS 1101 1150 ENSTTRP00000002942/1-1236 PTGSDTRLPA FLSFKFLKSP ETRRDAERSH SPPKAFHASK LISFGGARAE ENSBTAP00000022706/1-1193 PTGSDTRLPA FLSFKFLKSP ETRRDPERSH SPPKAFHAGK LFPFGGARAE BACU016689/1-1108 PTSSDTRLPA FLSFKFLKSP ETRRDPERSH SPPKAFHAGK LFPFGGARAE bmy_02591T0/1-1425 PTGSDTRLPA FLSFKFLKSP ETRRDPERSH SPPKAFHAGK LFPFGGARAE 1151 1200 ENSTTRP00000002942/1-1236 AGSNGAGG-A RLDGTXXX-- ---------- ---------- ---------- ENSBTAP00000022706/1-1193 AGSNGAGGQA RQDGTLGG-- GGCRAQRSGL ADEAAAEEPD TPRP------ BACU016689/1-1108 AGPNGAGGQA RQD------- ---------- ---------- ---------- bmy_02591T0/1-1425 AGSNGAGGQA RQDGTPGGGS GGSRAQRSGP ADEAAAEEPD TPRPEEEGSE 1201 1250 ENSTTRP00000002942/1-1236 ------XXXX XXXXXXXXXX XXXXXXXXXX XXXXXX---- ---------- ENSBTAP00000022706/1-1193 ------EEES SGTALAPV-- ---------- ---------- ---------- BACU016689/1-1108 ------XXXX XXXXXXXXXX XXXXXXXXXX XXXRDP---- ---------- bmy_02591T0/1-1425 GLKGTQEAQS PGTGWGPGYV VRGASWSKPT QSFRDPGEPG ALCLTLLTPG 1251 1300 ENSTTRP00000002942/1-1236 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022706/1-1193 ---------- ---------- ---------- ---------- ---------- BACU016689/1-1108 ---------- ---------- ---------- ---------- ---------- bmy_02591T0/1-1425 EGCQSPSSQC PSHGLPCSGA RRDEGGPFTT WPSLSCPHET LHPAHSGGTG 1301 1350 ENSTTRP00000002942/1-1236 ---------- ---------- ---------- ---------- -----TAPAP ENSBTAP00000022706/1-1193 ---------- ---------- ---------- ---------- ---------- BACU016689/1-1108 ---------- ---------- ---------- ---------- ---------- bmy_02591T0/1-1425 PPGLYASPHP AAQLFEPGGS AGRVPSGVQR RGRHLPGTAP LASAGTAPAP 1351 1400 ENSTTRP00000002942/1-1236 VGAPAFRTRR SRSPAPPPPP PPTPLPRPPT PPAGCWQWDG PWGCGGEGAA ENSBTAP00000022706/1-1193 -GAPALRTRR SRSPA-PPPP PPTPMPRPPT PPAGCWQWDG PWGCGGEGAA BACU016689/1-1108 --------RR ---------- ---------- -----WQW-- ---------- bmy_02591T0/1-1425 EGAPALLTRR SRIPAPPPPP PPTPLPRPPT PPAGCWQWDG PWGCGGEGAA 1401 1450 ENSTTRP00000002942/1-1236 PRQAL---AA AECPPCALAG PLPAPQ--LL PGAASFYSLP PPPL-PPTSE ENSBTAP00000022706/1-1193 PRQAP---AA TDCPPCALAG PPPVPQ--PL PGDASFYSLP PPPLPPPTSV BACU016689/1-1108 ---------- ---------- ---------- ---------- ---------- bmy_02591T0/1-1425 PRQAPAAAAA AECPPCALAG PLPAPAAGVL PGDASFYSLP PP---PPTSE 1451 1500 ENSTTRP00000002942/1-1236 PPEPPAPSPS PSSSPSPSPQ AVCWPSGWH ENSBTAP00000022706/1-1193 PPQPPAPSPS PSS--SPSPQ AVCWPSGWH BACU016689/1-1108 ---------- ---------- -------W- bmy_02591T0/1-1425 PPEPPAPSPN PSSSPSPSPQ AVCWPSGWH