KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:18:27 2014 Check: 00 ..
Name: ENSTTRP00000012559/1-313 Len: 405 Check: 9719 Weight: 1.00
Name: ENSP00000264595/1-346 Len: 405 Check: 1953 Weight: 1.00
Name: ENSBTAP00000022716/1-348 Len: 405 Check: 7821 Weight: 1.00
Name: bmy_03958T0/1-405 Len: 405 Check: 1530 Weight: 1.00
Name: BACU013320/1-298 Len: 405 Check: 2214 Weight: 1.00
//
1 50
ENSTTRP00000012559/1-313 ---------- ---------- ---------- ---------- ----MARKPN
ENSP00000264595/1-346 ---------- ---------- ---------- ---------- ----MARKSN
ENSBTAP00000022716/1-348 ---------- ---------- ---------- ---------- --AAMAWKPG
bmy_03958T0/1-405 GGVGGAGRWA GRRDREFRDP QPRRYRGPGG RGPRRAYSRR RRAAMARKLS
BACU013320/1-298 ---------- ---------- ---------- ---------- ----MARKPS
51 100
ENSTTRP00000012559/1-313 PAVLLSLLLL CQAPVCSSGP LPLILNTWPF RNAAVAXXXX XXXXXXXXXX
ENSP00000264595/1-346 LPVLLVPFLL CQALVRCSSP LPLVVNTWPF KNATEAAWRA LASGGSALDA
ENSBTAP00000022716/1-348 LLLPLLLLLL GPAPARSFGQ LPLVLNTWPF RNATVAAWKT LAAGGSALDA
bmy_03958T0/1-405 LRLLLSLLLL CRAPVCSSGP LPLVLNTWPF RNASVAAWRT LAAGGSALDA
BACU013320/1-298 LRLLLSLLLL CRAPVCSSGP LPLILNTWPF RNAAVAAWRT LAAGGSALDA
101 150
ENSTTRP00000012559/1-313 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXTT MNVGAVGDLR
ENSP00000264595/1-346 VESGCAMCER EQCDGSVGFG GSPDELGETT LDAMIMDGTT MDVGAVGDLR
ENSBTAP00000022716/1-348 VESGCATCEQ QQCDGSVGFG GSPDESGETT LDAMIMDGTT MNVGAVGDLR
bmy_03958T0/1-405 VESGCAACER ERCDGTVGFG GSPDESGETT LDAMIMDGTT MNVGAVGDLR
BACU013320/1-298 VESGCAACEQ ERCDGTVGFG GSPDESGETT LDAMIMDGTT MNVGAVGDLR
151 200
ENSTTRP00000012559/1-313 RIKNAIGVAR KVLEHTTHTL LAGESATKFA ESMGFINEDL STNASCALHS
ENSP00000264595/1-346 RIKNAIGVAR KVLEHTTHTL LVGESATTFA QSMGFINEDL STTASQALHS
ENSBTAP00000022716/1-348 RIKNAIGVAR KVLEHTTHTL LAGEAATKFA ESMGFINEDL STNVSQALHS
bmy_03958T0/1-405 RIKNAIGVAR KVLEHTTHTL LAGESATKFA ESMGFINEDL STDASCALHS
BACU013320/1-298 RIKNAIGVAR KVLEHTTHTL LAGESATKFA ESMGFINEDL STDASCALHS
201 250
ENSTTRP00000012559/1-313 DWLAWNCQPN YWRNVIPDAS KYCGPYKPPS ILKRDGSTYK ETGDSYGHDT
ENSP00000264595/1-346 DWLARNCQPN YWRNVIPDPS KYCGPYKPPG ILKQDIPIHK ETEDDRGHDT
ENSBTAP00000022716/1-348 DWRARNCQPN YWKNVIPDSS KYCGPYKPPT VLKRDGITYE DTAQSYGHDT
bmy_03958T0/1-405 DWLAWNCQPN YWRNVIPDAS KYCGPYKPPS ILKRDGSTYK ETGDSYGHDT
BACU013320/1-298 DWLAWNCQPN YWRNVTPDAS KYCGPYKPPS ILKREGSTYK ETGDSYGHDT
251 300
ENSTTRP00000012559/1-313 IGMVVIHKMG NIAAGTSTNG --------IK FKIPG----- --RIGDSPIP
ENSP00000264595/1-346 IGMVVIHKTG HIAAGTSTNG --------IK FKIHG----- --RVGDSPIP
ENSBTAP00000022716/1-348 IGMVVIHKTG NIAAGTSTNG --------IK FKIPG----- --RIGDSPIP
bmy_03958T0/1-405 IGMVVIHKMG NIAAVVEKHG RFITRKNLSK MLAPDLDSRN RFRIGDSPIP
BACU013320/1-298 IGMVVIHKMG NIAAGTSTNG --------IK FKIPG----- --RIGDSPIP
301 350
ENSTTRP00000012559/1-313 GSGAYADDTA GAAAATGDGD ILMRFLPSYQ AVEYMRRGED PTTACRKVIS
ENSP00000264595/1-346 GAGAYADDTA GAAAATGNGD ILMRFLPSYQ AVEYMRRGED PTIACQKVIS
ENSBTAP00000022716/1-348 GSGAYADDMV GAAAATGDGD ILMRFVPSYQ AVEYMRRGEN PTTACEKVIS
bmy_03958T0/1-405 GSGAYADDTA GAAAATGDGD ILMRFLPSYQ AVEYMRRGKD PTTACQKVIL
BACU013320/1-298 GSGAYADDTA GAAAATGDGD ILMRFLPR-- ---------- ----------
351 400
ENSTTRP00000012559/1-313 RIQKYFPNFF GAVVCANVTG SY-------- ---------- ----------
ENSP00000264595/1-346 RIQKHFPEFF GAVICANVTG SYGAACNKLS TFTQFSFMVY NSEKNQPTEE
ENSBTAP00000022716/1-348 RIQKYFPKFF GAVICANVTG SYGAACNKLS TFTQFPFMVY NPLKSAPTEE
bmy_03958T0/1-405 RIQKYFPNFF GAVVCANVTG SYGAACNKLS TFTQFHFMVY NPLKSEPTEE
BACU013320/1-298 -----FGSFY KNI---SVDV AY-----PVA SFNQMLVLEK NR--------
401 450
ENSTTRP00000012559/1-313 -----
ENSP00000264595/1-346 KVDCI
ENSBTAP00000022716/1-348 KVDCI
bmy_03958T0/1-405 KVDCI
BACU013320/1-298 -----