KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:27 2014 Check: 00 .. Name: ENSTTRP00000012559/1-313 Len: 405 Check: 9719 Weight: 1.00 Name: ENSP00000264595/1-346 Len: 405 Check: 1953 Weight: 1.00 Name: ENSBTAP00000022716/1-348 Len: 405 Check: 7821 Weight: 1.00 Name: bmy_03958T0/1-405 Len: 405 Check: 1530 Weight: 1.00 Name: BACU013320/1-298 Len: 405 Check: 2214 Weight: 1.00 // 1 50 ENSTTRP00000012559/1-313 ---------- ---------- ---------- ---------- ----MARKPN ENSP00000264595/1-346 ---------- ---------- ---------- ---------- ----MARKSN ENSBTAP00000022716/1-348 ---------- ---------- ---------- ---------- --AAMAWKPG bmy_03958T0/1-405 GGVGGAGRWA GRRDREFRDP QPRRYRGPGG RGPRRAYSRR RRAAMARKLS BACU013320/1-298 ---------- ---------- ---------- ---------- ----MARKPS 51 100 ENSTTRP00000012559/1-313 PAVLLSLLLL CQAPVCSSGP LPLILNTWPF RNAAVAXXXX XXXXXXXXXX ENSP00000264595/1-346 LPVLLVPFLL CQALVRCSSP LPLVVNTWPF KNATEAAWRA LASGGSALDA ENSBTAP00000022716/1-348 LLLPLLLLLL GPAPARSFGQ LPLVLNTWPF RNATVAAWKT LAAGGSALDA bmy_03958T0/1-405 LRLLLSLLLL CRAPVCSSGP LPLVLNTWPF RNASVAAWRT LAAGGSALDA BACU013320/1-298 LRLLLSLLLL CRAPVCSSGP LPLILNTWPF RNAAVAAWRT LAAGGSALDA 101 150 ENSTTRP00000012559/1-313 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXTT MNVGAVGDLR ENSP00000264595/1-346 VESGCAMCER EQCDGSVGFG GSPDELGETT LDAMIMDGTT MDVGAVGDLR ENSBTAP00000022716/1-348 VESGCATCEQ QQCDGSVGFG GSPDESGETT LDAMIMDGTT MNVGAVGDLR bmy_03958T0/1-405 VESGCAACER ERCDGTVGFG GSPDESGETT LDAMIMDGTT MNVGAVGDLR BACU013320/1-298 VESGCAACEQ ERCDGTVGFG GSPDESGETT LDAMIMDGTT MNVGAVGDLR 151 200 ENSTTRP00000012559/1-313 RIKNAIGVAR KVLEHTTHTL LAGESATKFA ESMGFINEDL STNASCALHS ENSP00000264595/1-346 RIKNAIGVAR KVLEHTTHTL LVGESATTFA QSMGFINEDL STTASQALHS ENSBTAP00000022716/1-348 RIKNAIGVAR KVLEHTTHTL LAGEAATKFA ESMGFINEDL STNVSQALHS bmy_03958T0/1-405 RIKNAIGVAR KVLEHTTHTL LAGESATKFA ESMGFINEDL STDASCALHS BACU013320/1-298 RIKNAIGVAR KVLEHTTHTL LAGESATKFA ESMGFINEDL STDASCALHS 201 250 ENSTTRP00000012559/1-313 DWLAWNCQPN YWRNVIPDAS KYCGPYKPPS ILKRDGSTYK ETGDSYGHDT ENSP00000264595/1-346 DWLARNCQPN YWRNVIPDPS KYCGPYKPPG ILKQDIPIHK ETEDDRGHDT ENSBTAP00000022716/1-348 DWRARNCQPN YWKNVIPDSS KYCGPYKPPT VLKRDGITYE DTAQSYGHDT bmy_03958T0/1-405 DWLAWNCQPN YWRNVIPDAS KYCGPYKPPS ILKRDGSTYK ETGDSYGHDT BACU013320/1-298 DWLAWNCQPN YWRNVTPDAS KYCGPYKPPS ILKREGSTYK ETGDSYGHDT 251 300 ENSTTRP00000012559/1-313 IGMVVIHKMG NIAAGTSTNG --------IK FKIPG----- --RIGDSPIP ENSP00000264595/1-346 IGMVVIHKTG HIAAGTSTNG --------IK FKIHG----- --RVGDSPIP ENSBTAP00000022716/1-348 IGMVVIHKTG NIAAGTSTNG --------IK FKIPG----- --RIGDSPIP bmy_03958T0/1-405 IGMVVIHKMG NIAAVVEKHG RFITRKNLSK MLAPDLDSRN RFRIGDSPIP BACU013320/1-298 IGMVVIHKMG NIAAGTSTNG --------IK FKIPG----- --RIGDSPIP 301 350 ENSTTRP00000012559/1-313 GSGAYADDTA GAAAATGDGD ILMRFLPSYQ AVEYMRRGED PTTACRKVIS ENSP00000264595/1-346 GAGAYADDTA GAAAATGNGD ILMRFLPSYQ AVEYMRRGED PTIACQKVIS ENSBTAP00000022716/1-348 GSGAYADDMV GAAAATGDGD ILMRFVPSYQ AVEYMRRGEN PTTACEKVIS bmy_03958T0/1-405 GSGAYADDTA GAAAATGDGD ILMRFLPSYQ AVEYMRRGKD PTTACQKVIL BACU013320/1-298 GSGAYADDTA GAAAATGDGD ILMRFLPR-- ---------- ---------- 351 400 ENSTTRP00000012559/1-313 RIQKYFPNFF GAVVCANVTG SY-------- ---------- ---------- ENSP00000264595/1-346 RIQKHFPEFF GAVICANVTG SYGAACNKLS TFTQFSFMVY NSEKNQPTEE ENSBTAP00000022716/1-348 RIQKYFPKFF GAVICANVTG SYGAACNKLS TFTQFPFMVY NPLKSAPTEE bmy_03958T0/1-405 RIQKYFPNFF GAVVCANVTG SYGAACNKLS TFTQFHFMVY NPLKSEPTEE BACU013320/1-298 -----FGSFY KNI---SVDV AY-----PVA SFNQMLVLEK NR-------- 401 450 ENSTTRP00000012559/1-313 ----- ENSP00000264595/1-346 KVDCI ENSBTAP00000022716/1-348 KVDCI bmy_03958T0/1-405 KVDCI BACU013320/1-298 -----