KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:27 2014 Check: 00 .. Name: ENSTTRP00000013056/1-681 Len: 965 Check: 2257 Weight: 1.00 Name: BACU012036/1-956 Len: 965 Check: 9085 Weight: 1.00 Name: ENSP00000419970/1-680 Len: 965 Check: 9711 Weight: 1.00 Name: ENSBTAP00000022718/1-680 Len: 965 Check: 9638 Weight: 1.00 Name: bmy_17499T0/1-702 Len: 965 Check: 5619 Weight: 1.00 // 1 50 ENSTTRP00000013056/1-681 ---------- ---------- ---------- ---------- ---------- BACU012036/1-956 MAAFSTFGCI RLSAKERRIP GAPHSRLLRP YAGSPPPPLA VSPPTTWSVA ENSP00000419970/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022718/1-680 ---------- ---------- ---------- ---------- ---------- bmy_17499T0/1-702 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013056/1-681 ---------- ---------- ---------- ---------- ---------- BACU012036/1-956 QHPVLIRWQG TGGGDAEVEF DTGRDLRIQT LHKLSASLHT EQDRASVPAS ENSP00000419970/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022718/1-680 ---------- ---------- ---------- ---------- ---------- bmy_17499T0/1-702 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013056/1-681 ---------- ---------- ---------- ---------- ---------- BACU012036/1-956 VIREQQTPAL RIGPQGAALQ GPTVPVQGYT AVWALAASRL GIRPAVAKGY ENSP00000419970/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022718/1-680 ---------- ---------- ---------- ---------- ---------- bmy_17499T0/1-702 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000013056/1-681 ---------- ---------- ---------- ---------- ---------- BACU012036/1-956 VCSFISGLPL KLLNFGRGLL NFQAHTLLSK TKNRGKKLVI ERKPQEADED ENSP00000419970/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022718/1-680 ---------- ---------- ---------- ---------- ---------- bmy_17499T0/1-702 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000013056/1-681 ---------- ---------- ---------- -------SIN MGDSSVEAGA BACU012036/1-956 MNAYCQVRCS PGPFPLPFCS FCLSDLRVNA AGDILSFLIN MGDSSVEAGA ENSP00000419970/1-680 ---------- ---------- ---------- -------MIN MGDSHVDTSS ENSBTAP00000022718/1-680 ---------- ---------- ---------- --------MN MADSNMDAGT bmy_17499T0/1-702 ---------- -------MVS GRGVSLTVRS RVLMYPGGSA LALRGVGFGL 251 300 ENSTTRP00000013056/1-681 TASDAVAEEV SLFSTTDMIM FSLIVGLLTY WFLFRKKKDE VPEF------ BACU012036/1-956 TVSDTAAEEV SLFSTTDVIM FSLIVGLLTY WFLFRNKKDE VPEF------ ENSP00000419970/1-680 TVSEAVAEEV SLFSMTDMIL FSLIVGLLTY WFLFRKKKEE VPEF------ ENSBTAP00000022718/1-680 TTSEMVAEEV SLFSTTDVIL FSLIVGVMTY WFLFRKKKEE VPEF------ bmy_17499T0/1-702 TRPRSLGPAS SSPGTGPEAA AG---GGATE W---SRRSWE CPSLLPHASR 301 350 ENSTTRP00000013056/1-681 ---TRIQTTT SSVKDSSFVE KMKKTGRNIV VFYGSQTGTA EEFANRLSKD BACU012036/1-956 ---TKIQTTT SSVKDSSFVE KMKKTGRNIV VFYGSQTGTA EEFANRLSKD ENSP00000419970/1-680 ---TKIQTLT SSVRESSFVE KMKKTGRNII VFYGSQTGTA EEFANRLSKD ENSBTAP00000022718/1-680 ---TKIQTTT SSVKDRSFVE KMKKTGRNII VFYGSQTGTA EEFANRLSKD bmy_17499T0/1-702 AHQTLLFFRT SSVKDSSFVE KMKKTGRNIV VFYGSQTGTA EEFANRLSKD 351 400 ENSTTRP00000013056/1-681 AHRYGMRGMA ADPEEYDLGD LSSLSEIENA LAVFCMATYG EGDPTDNAQD BACU012036/1-956 AHRYGMRGMA ADPEEYDLGD LSSLSEIENA LAVFCMATYG EGDPTDNAQD ENSP00000419970/1-680 AHRYGMRGMS ADPEEYDLAD LSSLPEIDNA LVVFCMATYG EGDPTDNAQD ENSBTAP00000022718/1-680 AHRYGMRGMA ADPEEYDLAD LSSLPEIEKA LAIFCMATYG EGDPTDNAQD bmy_17499T0/1-702 AHRYGMRGMA ADPEEYDLGD LSSLSEIENA LAVFCMATYG EGDPTDNAQD 401 450 ENSTTRP00000013056/1-681 FYDWLQETDV DLSGVKYAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012036/1-956 FYDWLQETDV DLSGVKYAVF GLGNKTYEHF NAMGKYVDKR LEQLGAQRIF ENSP00000419970/1-680 FYDWLQETDV DLSGVKFAVF GLGNKTYEHF NAMGKYVDKR LEQLGAQRIF ENSBTAP00000022718/1-680 FYDWLQETDV DLSGVKYAVF ALGNKTYEHF NAMGKYVDKR LEQLGAQRIF bmy_17499T0/1-702 FYDWLQETDV DLSGVKYAVF GLGNKTYEHF NAMGKYVDKR LEQLGAQRIF 451 500 ENSTTRP00000013056/1-681 XXXXXXXXXX LEEDFITWRE QFWPAVCEHL GVEATGEESS IRQYELVVHT BACU012036/1-956 DLGLGDDDGN LEEDFITWRE QFWPAVCEHL GVEATGDESS IRQYELVVHT ENSP00000419970/1-680 ELGLGDDDGN LEEDFITWRE QFWPAVCEHF GVEATGEESS IRQYELVVHT ENSBTAP00000022718/1-680 DLGLGDDDGN LEEDFITWRE QFWPAVCEHF GVEATGEESS IRQYELMVHT bmy_17499T0/1-702 DLGLGDDDGN LEEDFITWRE QFWPAVCEHL GVEATGEESS IRQYELVVHT 501 550 ENSTTRP00000013056/1-681 DIDAAKVYVG EMGRLKSYEN QKP------- ---------- ---------- BACU012036/1-956 DIDAAKVYVG EMGRLKSYEN QKPYPGEGGT HQFLDQDEVS LGVGRFRLKA ENSP00000419970/1-680 DIDAAKVYMG EMGRLKSYEN QKP------- ---------- ---------- ENSBTAP00000022718/1-680 DMDMAKVYTG EMGRLKSYEN QKP------- ---------- ---------- bmy_17499T0/1-702 DIDAAKVYVG EMGRLKSYEN QKP------- ---------- ---------- 551 600 ENSTTRP00000013056/1-681 ---------- -PFDAKNPFL AVVTTNRKLN QGTERHFMHL ELDISDSKIR BACU012036/1-956 WPVTELLSPP SPFDAKNPFL AVVTTNRKLN QGTERHLMHL ELDISDSKIR ENSP00000419970/1-680 ---------- -PFDAKNPFL AAVTTNRKLN QGTERHLMHL ELDISDSKIR ENSBTAP00000022718/1-680 ---------- -PFDAKNPFL AVVTTNRKLN QGTERHLMHL ELDISDSKIR bmy_17499T0/1-702 ---------- -PFDAKNPFL AVVTTNRKLN QGTERHLMHL ELDISDSKIR 601 650 ENSTTRP00000013056/1-681 YESGDHVAVY PANDSALVNQ LGEILGADLD VIMSLNNLDE DSNKKHPFPC BACU012036/1-956 YESGDHVAVY PANDSALVNQ LGEILGADLD VIMSLNNLDE DSNKKHPFPC ENSP00000419970/1-680 YESGDHVAVY PANDSALVNQ LGKILGADLD VVMSLNNLDE ESNKKHPFPC ENSBTAP00000022718/1-680 YESGDHVAVY PANDSALVNQ LGEILGADLD IIMSLNNLDE ESNKKHPFPC bmy_17499T0/1-702 YESGDHVAVY PANDSALVNQ LGEILGADLD VIMSLNNLDE DSNKKHPFPC 651 700 ENSTTRP00000013056/1-681 PTSYRTALTY YLDITNPPRT NVLYELAQYA SEPSEQEQLR KMASSSGEGK BACU012036/1-956 PTSYRTALTY YLDITNPPRT NVLYELAQYA SEPSEQEQLR KMVSSSGEGK ENSP00000419970/1-680 PTSYRTALTY YLDITNPPRT NVLYELAQYA SEPSEQELLR KMASSSGEGK ENSBTAP00000022718/1-680 PTSYRTALTY YLDITNPPRT NVLYELAQYA SEPTEHEQLR KMASSSGEGK bmy_17499T0/1-702 PTSYRTALTY YLDITNPPRT NVLYELAQYA SEPSEQEQLR KMVSSSGEGK 701 750 ENSTTRP00000013056/1-681 ELYLSWVVEA RRHILAILQD YSSLRPPIDH LCELLPRLQA RYYSIASSSK BACU012036/1-956 ELYLSWVVEA RRHILAILQD YSSLRPPIDH LCELLPRLQA RYYSIASSSK ENSP00000419970/1-680 ELYLSWVVEA RRHILAILQD CPSLRPPIDH LCELLPRLQA RYYSIASSSK ENSBTAP00000022718/1-680 ELYLRWVLEA RRHILAILQD YPSLRPPIDH LCELLPRLQA RYYSIASSSK bmy_17499T0/1-702 ELYLSWVVEA RRHILAILQD YSSLRPPIDH LCELLPRLQA RYYSIASSSK 751 800 ENSTTRP00000013056/1-681 VHPNSVHICA VAVEYETQSG RVNKGVATSW LRAKEPSGEN GHRALVPMFV BACU012036/1-956 VHPNSVHICA VAVEYETQSG RVNKGVATSW LRAKEPAGEN GRRALVPMFV ENSP00000419970/1-680 VHPNSVHICA VVVEYETKAG RINKGVATNW LRAKEPAGEN GGRALVPMFV ENSBTAP00000022718/1-680 VHPNSVHICA VAVEYETKTG RINKGVATSW LRAKEPAGEN GGRALVPMYV bmy_17499T0/1-702 VHPNSVHICA VAVEYETQSG RVNKGVATSW LRAKEPAGEN GRRALVPMFV 801 850 ENSTTRP00000013056/1-681 RKSQFRLPFK ATVPVIMVGP GTGVAPFIGF VQERAWLRQQ GKEVGETLLY BACU012036/1-956 RKSQFRLPFK ATVPVIMVGP GTGVAPFIGF IQERAWLRQQ GKEVGETLLY ENSP00000419970/1-680 RKSQFRLPFK ATTPVIMVGP GTGVAPFIGF IQERAWLRQQ GKEVGETLLY ENSBTAP00000022718/1-680 RKSQFRLPFK ATTPVIMVGP GTGVAPFIGF IQERAWLRQQ GKEVGETLLY bmy_17499T0/1-702 RKSQFRLPFK ATVPVIMVGP GTGVAPFIGF IQERAWLRQQ GG--GETLLY 851 900 ENSTTRP00000013056/1-681 YGCRRSDEDY LYREELAKLH QDGVLTQLNV AFSREQPQKV YVQHLLKRDR BACU012036/1-956 YGCRRSDEDY LYREELAKFH QDGALTQLNV AFSREQPQKV YVQHLLKRDG ENSP00000419970/1-680 YGCRRSDEDY LYREELAQFH RDGALTQLNV AFSREQSHKV YVQHLLKQDR ENSBTAP00000022718/1-680 YGCRRSDEDY LYREELAGFH KDGALTQLNV AFSREQPQKV YVQHLLKKDK bmy_17499T0/1-702 YGCRRSDEDY LYREELAKFH RDGALTQLNV AFSREQPQKV YVQHLLKRDG 901 950 ENSTTRP00000013056/1-681 EHLWKLIHDR GAHIYVCGDA RNMARDVQNT FYDIVAEQGA MEHAQAVDYV BACU012036/1-956 EHLWKLIHDG GAHIYVCGDA RNMARDVQNT FYDIVAEQGA MEHAQAVDYV ENSP00000419970/1-680 EHLWKLI-EG GAHIYVCGDA RNMARDVQNT FYDIVAELGA MEHAQAVDYI ENSBTAP00000022718/1-680 EHLWKLIHEG GAHIYVCGDA RNMARDVQNT FYDIVAEQGA MEHAQAVDYV bmy_17499T0/1-702 EHLWKLIHDG GAHIYVCGDA RNMARDVQNT FYDIVAEQGA MEHAQAVDYV 951 1000 ENSTTRP00000013056/1-681 KKLMTKGRYS LDVWS BACU012036/1-956 KKLMTKGRYS LDVWS ENSP00000419970/1-680 KKLMTKGRYS LDVWS ENSBTAP00000022718/1-680 KKLMTKGRYS LDVWS bmy_17499T0/1-702 KKLMTKGRYS LDVWS