KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:34 2014 Check: 00 .. Name: ENSP00000262109/1-443 Len: 585 Check: 9343 Weight: 1.00 Name: bmy_20051T0/1-357 Len: 585 Check: 7630 Weight: 1.00 Name: ENSBTAP00000022730/1-355 Len: 585 Check: 3801 Weight: 1.00 Name: ENSTTRP00000015708/1-348 Len: 585 Check: 5746 Weight: 1.00 Name: BACU013283/1-472 Len: 585 Check: 4809 Weight: 1.00 // 1 50 ENSP00000262109/1-443 ------MAAH RKHVFVEK-- ---VLQR--- ---------- ------LFPP bmy_20051T0/1-357 MEQVGACGQQ RVCWACTGHV LSMCWAC--- ---------- -------TAT ENSBTAP00000022730/1-355 ------CKLI ASAVFVGK-- ---VLKK--- ---------- ------LYPE ENSTTRP00000015708/1-348 ------MAAL RRHVFVGK-- ---VLKK--- ---------- ------LYPE BACU013283/1-472 ------MAAL RKHARCTRRT QLFTIRSETG LLPVGSLTKL PSKVGLLQNI 51 100 ENSP00000262109/1-443 VPSGQ----- ---------- -GKREPQTLA VQNP------ ---------- bmy_20051T0/1-357 RVRGW----- ---------- -GGRGRIGVG VV-------- ---------- ENSBTAP00000022730/1-355 VSHGQ----- ---------- -EKKAPVTPA SRNP------ ---------- ENSTTRP00000015708/1-348 VPRGQ----- ---------- -EKRAPVSPA CRNP------ ---------- BACU013283/1-472 VVKGWIKSPP ALLLSVAASP LGACGALSPA AQTPAEPGAL ALRACSTLDA 101 150 ENSP00000262109/1-443 ---------- ---------P KKVTSEKVSQ ---------K H-AEPLTDTG bmy_20051T0/1-357 ---------- ---------P LRLHVHRRPS ---------H HTSTPDLVCC ENSBTAP00000022730/1-355 ---------- ---------P EKGAPEREKG ---------Q S-VPPETGGD ENSTTRP00000015708/1-348 ---------- ---------P EKVAPERVRR ---------G H--PPMTGGD BACU013283/1-472 DSQMSVQDPH TVGWSAVEAP LTLVPHQCSG VAWRGATERD TRKEARRGGD 151 200 ENSP00000262109/1-443 SETPTARRLY TASGPPEGY- -VPCWPEPSS CGSPENASSG DDTEDQDPHD bmy_20051T0/1-357 VAVTATSRPC HLPAESPGFI FIHMGPIADS DGQVVTVCFS SSHTNQDLHA ENSBTAP00000022730/1-355 ARVQPTRRPY TVGLPPEGW- -VPPLPEPLS CSSSESSSSS EDTGDQDLHD ENSTTRP00000015708/1-348 TQVQPARRLY TVGLPPEGW- -VPPPPEAPS CSSPESSSSG EDIGDQDLQA BACU013283/1-472 TQVQPARRLY TVGLPPEGW- -VPPPPEAPS CSSPKSSSSG EDAGDQDLHA 201 250 ENSP00000262109/1-443 QPKRRRIRKH KSKKKFKNPN NVLIEQAELE KQQSLLQEKS QRQ---HTDG bmy_20051T0/1-357 QPKRRRIRKH NSKKKFKNPN NIPVEQAELX KQQSILQEKL QPR---HTDG ENSBTAP00000022730/1-355 LPKRRRIRKH KSKKKFKNPN NIHVEPAESE KQQSLLQEKL QLR---HTDG ENSTTRP00000015708/1-348 QPKRRRIRKH NSKKKFKNPS NIPLEQAELE KQQSILQEKL QPHSHSHTDG BACU013283/1-472 QPKRRRIRKH NSKKKFKNPS NVPVEQAELE KQQSILQEKL QPR---HTDG 251 300 ENSP00000262109/1-443 TTISKNKKRK LKKKQQIKRK KAAGLAAKAA GVSFMYQPED SSNEGEGVGE bmy_20051T0/1-357 PTISKNKKRK LKKKQQIKRK KAAGLLTGVS GVNFMYQPEE TSSE------ ENSBTAP00000022730/1-355 PTISKNKKRK LKKKQQMQRK KAAGSLTGAS GVHFMYQPEE TSSE------ ENSTTRP00000015708/1-348 PTISKNKKRK LKKKQQIKRK KAAGLLTGVS GINFMYQPEE TSSE------ BACU013283/1-472 PTISKNKKRK LKKKQQIKRK KAAGLLTGVS GVNFMYQPEE TSSE------ 301 350 ENSP00000262109/1-443 ACEEDGVDTS EEDPTLAGEE DVKDTREED- GADASEEDLT RARQEEGADA bmy_20051T0/1-357 ---------- --------QD DVRVSDGED- VADG------ ---------- ENSBTAP00000022730/1-355 ---------- --------QE DVRATDGESA GAAT------ ---------- ENSTTRP00000015708/1-348 ---------- --------QG DVRVSDGED- GADG------ ---------- BACU013283/1-472 ---------- --------QD DVRVSDGED- VADR------ ---------- 351 400 ENSP00000262109/1-443 SEEDPTPAGE EDVKDAREED GVDTIEEDLT RAGEEDGKDT REEDGADASE bmy_20051T0/1-357 ---------- ---------- ---------- ---------- --EGGVPEA- ENSBTAP00000022730/1-355 ---------- ---------- ---------- ---------- --RGGAAGAV ENSTTRP00000015708/1-348 ---------- ---------- ---------- ---------- --EGGGPDA- BACU013283/1-472 ---------- ---------- ---------- ---------- --EGGVPEA- 401 450 ENSP00000262109/1-443 EDPTWAGEEE GADSGEEDGA DASEEDDTIT NEKAHSILNF LKSTQEMYFY bmy_20051T0/1-357 -------EEE GA-------T DAGEEDVKST NEKADGILNF LKSTQEIYFY ENSBTAP00000022730/1-355 EEPVLPLEEG GV-------P DAEEEEVKST NEKADGILNF LKSTVEIYFY ENSTTRP00000015708/1-348 -------EEE GA-------T DAGKEDVKST NEKADDILNF LKSTQEIYFY BACU013283/1-472 -------EEE GA-------T DAGEEDIKST NEKADGILNF LKSTQEIYFY 451 500 ENSP00000262109/1-443 DGVSRDAASA ALADAAEELL DRLASHSMLP SDVSILYHMK TLLLLQDTER bmy_20051T0/1-357 DGVSKDSDSA VFMETSEELF KYLETHSMPS SDVFILDHMK TLLLLQDTER ENSBTAP00000022730/1-355 DGVSKDSDSG VFMESTKKLF KQLETHSVSP SDVFILDHMK TLLLLHDTKR ENSTTRP00000015708/1-348 DGVSKDSDSA VFMETSGELF KYLETHSMPS SDVFILDHMK MLLLLQDTER BACU013283/1-472 DGVSKDSDSA VFMETSEELF KYLETHSMPS SDVFILDHMK TLLLLQDTER 501 550 ENSP00000262109/1-443 LKHALEMFPE HCTMPP---- ---------- ---------- -----DHARV bmy_20051T0/1-357 LKSALEVFPE HCRMPP---- ---------- ---------- -----DYARV ENSBTAP00000022730/1-355 LKSALDVFPE HCRMPL---- ---------- ---------- -----EYARV ENSTTRP00000015708/1-348 LKSALEVFPE HCRMPP---- ---------- ---------- -----DYARV BACU013283/1-472 LKSALEVFPE HCRMPPVPWV GLHTGSLKSH RATVGILRPQ KSADTEYQRI 551 600 ENSP00000262109/1-443 ISAFFSYWIT HILPEKSSD- ---------- ----- bmy_20051T0/1-357 ISAFFNYWIT HILPEKNNE- ---------- ----- ENSBTAP00000022730/1-355 ISAFFNYWIT HILPEKNDE- ---------- ----- ENSTTRP00000015708/1-348 ISAFFNYWIT HILPEKNNE- ---------- ----- BACU013283/1-472 GTS----WSA LQLHGMGQDS VPVLGAGPRT GTGQT