KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:35 2014 Check: 00 .. Name: ENSTTRP00000002128/1-964 Len: 1039 Check: 8071 Weight: 1.00 Name: ENSP00000265026/1-966 Len: 1039 Check: 3272 Weight: 1.00 Name: ENSBTAP00000022739/1-966 Len: 1039 Check: 6977 Weight: 1.00 Name: bmy_16565T0/1-541 Len: 1039 Check: 7054 Weight: 1.00 Name: BACU016557/1-872 Len: 1039 Check: 2706 Weight: 1.00 // 1 50 ENSTTRP00000002128/1-964 MANPQEHLSC SPSPHLPLSE NKTFNGLQDD IAPMRSHPSP KLLKDQQEKG ENSP00000265026/1-966 MANFQEHLSC SSSPHLPFSE SKTFNGLQDE LTAMGNHPSP KLLEDQQEKG ENSBTAP00000022739/1-966 MANPQEHLSC SSSPRLPLSE NKTFNGLQDD LAPMGSHASP KLLKDQQEKG bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 ---------- ---------- ---------- ----MNRRWP CLM------G 51 100 ENSTTRP00000002128/1-964 VVQTELNEGM NSPITTTVLT SVSEDSRDQF ENSVLQLREQ DESEMAMSHG ENSP00000265026/1-966 MVRTELIESV HSPVTTTVLT SVSEDSRDQF ENSVLQLREH DESETAVSQG ENSBTAP00000022739/1-966 MVQTELAEGT NSPITTTVLT SISEDSRDQF ENSVLQLREQ DESEMAMSHG bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 TATLWMERAQ VEPKTSRF-- ---------- ---------- ---------- 101 150 ENSTTRP00000002128/1-964 NSNTVDGEGT SGTEDIKIQF SRSGSGSGGF LEGLFGCLRP VWNIIGKAYS ENSP00000265026/1-966 NSNTVDGEST SGTEDIKIQF SRSGSGSGGF LEGLFGCLRP VWNIIGKAYS ENSBTAP00000022739/1-966 NSNTVDGEGT SGTEDIKIQF SRSGSGSGGF LEGLFGCLRP VWNIIGKAYS bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 ---------- ---------- --SSAXXGGF LEGLFGCLRP VWNIIGKAYS 151 200 ENSTTRP00000002128/1-964 TDYKLQQQDT WEVPFEEISE LQWLGSGAQG AVFLGKFRAE EVAIKKVREQ ENSP00000265026/1-966 TDYKLQQQDT WEVPFEEISE LQWLGSGAQG AVFLGKFRAE EVAIKKVREQ ENSBTAP00000022739/1-966 TDYKLQQQDT WEVPFEEISE LQWLGSGAQG AVFLGKFRAE EVAIKKVREQ bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 TDYKLQQQDT WEVPFEEISE LQWLGSGAQG AVFLGKFRAE EVAIKKVREQ 201 250 ENSTTRP00000002128/1-964 NETDIKHLRK LKHPNIIAFK GVCTQAPCYC IIMEYCAHGQ LYEVLRAGRK ENSP00000265026/1-966 NETDIKHLRK LKHPNIIAFK GVCTQAPCYC IIMEYCAHGQ LYEVLRAGRK ENSBTAP00000022739/1-966 NETDIKHLRK LKHPNIIAFK GVCTQAPCYC IIMEYCAHGQ LYEVLRAGRK bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 NETDIKHLRK LKHPNIIAFK GVCTQAPCYC IIMEYCAHGQ LYEVLRAGRK 251 300 ENSTTRP00000002128/1-964 ITPRLLVDWS TGIASGMNYL HLHKIIHRDL KSPNVLVTHT DAVKISDFGT ENSP00000265026/1-966 ITPRLLVDWS TGIASGMNYL HLHKIIHRDL KSPNVLVTHT DAVKISDFGT ENSBTAP00000022739/1-966 ITPRLLVDWS TGIASGMNYL HLHKIIHRDL KSPNVLVTHT DAVKISDFGT bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 ITPRLLVDWS TGIASGMNYL HLHKIIHRDL KSPNVLVTHT DAVKISDFGT 301 350 ENSTTRP00000002128/1-964 SKELSDKSTK MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE ENSP00000265026/1-966 SKELSDKSTK MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE ENSBTAP00000022739/1-966 SKELSDKSTK MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 SKELSDKSTK MSFAGTVAWM APEVIRNEPV SEKVDIWSFG VVLWELLTGE 351 400 ENSTTRP00000002128/1-964 IPYKDVDSSA IIWGVGSNSL HLPVPSTCPD GFKILMKQTW QSKPRNRPSF ENSP00000265026/1-966 IPYKDVDSSA IIWGVGSNSL HLPVPSTCPD GFKILMKQTW QSKPRNRPSF ENSBTAP00000022739/1-966 IPYKDVDSSA IIWGVGSNSL HLPVPSTCPD GFKILMKQTW QSKPRNRPSF bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 IPYKDVDSSA IIWGVGSNSL HLPVPSTCPD GFKILMKQTW QSKPRNRPSF 401 450 ENSTTRP00000002128/1-964 RQTLMHLDIA SADVLATPQE TYFKS-AEWR EEVKKHFEKI KSEGTCIHRL ENSP00000265026/1-966 RQTLMHLDIA SADVLATPQE TYFKSQAEWR EEVKKHFEKI KSEGTCIHRL ENSBTAP00000022739/1-966 RQTLMHLDIA SADVLATPQE TYFKSQAEWR EEVKKHFEKI KSEGTCIHRL bmy_16565T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU016557/1-872 RQTLMHLDIA SADVLATPQE TYFKSQAEWR EEVKKHFEKI KSEGTCIHRL 451 500 ENSTTRP00000002128/1-964 DEELIRRRRE ELRHALDIRE HYERKLXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265026/1-966 DEELIRRRRE ELRHALDIRE HYERKLERAN NLYMELSAIM LQLEMREKEL ENSBTAP00000022739/1-966 DEELIRRRRE ELRHALDIRE HYERKLERAN NLYMELSAIM LQLEMREKEL bmy_16565T0/1-541 ---------- ---------- ---------- ---MELSAIM LQLEMREKEL BACU016557/1-872 DEELIRRRRE ELRHALDIRE HYERKLERAN NLYMELSAIM LQLEMREKEL 501 550 ENSTTRP00000002128/1-964 XXREQAVEKK YPGTYKRHPV RPIIHPNAME KLMKKKGVPH RPGMQAKRPD ENSP00000265026/1-966 IKREQAVEKK YPGTYKRHPV RPIIHPNAME KLMKRKGVPH KSGMQTKRPD ENSBTAP00000022739/1-966 IKREQAVEKK YPGTYKRHPV RPIIHPNAME KLMKRKGMPH RPGMQAKRPD bmy_16565T0/1-541 IKREQAVEKK YPGTYKRHPV RPIIHPNAME KLMKRKGVPH RPGMQAKRPD BACU016557/1-872 IKREQAVEKK YPGTYKRHPV RPIIHPNAME KLMKKKGVPH RPGMQAKRPD 551 600 ENSTTRP00000002128/1-964 LLRSEGIPSV EVAPTASPLS GSPKMSTSSS KSRYRSKPRH RRGSSRGSHS ENSP00000265026/1-966 LLRSEGIPTT EVAPTASPLS GSPKMSTSSS KSRYRSKPRH RRGNSRGSHS ENSBTAP00000022739/1-966 LLRSEGIPSV EVAPTASPLS GSPKLSSSSS KSRYRSKPRH RRGNSRGSHG bmy_16565T0/1-541 LLRSEGIPSV EVAPTASPLS GSPKMSTSSS KSRYRSKPRH RRGSSRGSHS BACU016557/1-872 LLRSEGIPSV EVAPTASPLS GSPKMSTSSS KSRYRSKPRH RRGSSRGSHG 601 650 ENSTTRP00000002128/1-964 DFAAILKSQP ARENSPHPTY LHQAQSEYPS HHHRSPLQQQ HQQPPPATSQ ENSP00000265026/1-966 DFAAILKNQP AQENSPHPTY LHQAQSQYPS LHHHNSLQQQ YQQPPPAMSQ ENSBTAP00000022739/1-966 DFAAILKNQP AQEDSPHPTS LHQAEPQYPS SQHHNLLQQQ YQQPPPAMSQ bmy_16565T0/1-541 DFVAILKNQP ARENSPHPTY LHQAQSEYPS SHHRSPLQQQ YQQPPPATSQ BACU016557/1-872 DFAAILKNQP ARENSPHPTY LHQAQSEYPS PHHRSPLQQQ YQQPPPAASQ 651 700 ENSTTRP00000002128/1-964 SHRPRLDMHG QDVATCANNL RYFGPAAALR SPLSSHAQRQ MPGSSPDLIS ENSP00000265026/1-966 SHHPRLNMHG QDIATCANNL RYFGPAAALR SPLSNHAQRQ LPGSSPDLIS ENSBTAP00000022739/1-966 SHHPRLNMHG QDIATCANNL RYFGPAAALR SPLSNHSQRQ MPGSSPDLIS bmy_16565T0/1-541 SHHPRLDMHG QDIATCANNL RYFGPAAALR SPLSNHAQRQ MPGSSPDLIS BACU016557/1-872 SHHPRLDMHG QDIATCANNL RYFGPAAALR SPLSNHAQRQ MPGSSPDLIS 701 750 ENSTTRP00000002128/1-964 TAVAADCWKS SEPNKGQAGP WGCCQADPYD PCLQRRPEQH GSVDVPSAKP ENSP00000265026/1-966 TAMAADCWRS SEPDKGQAGP WGCCQADAYD PCLQCRPEQY GSLDIPSAEP ENSBTAP00000022739/1-966 TAMAADCWRS SEPDKGQAGP WGCCQADSYD PCLQCRPEQH GSLDVPSAKP bmy_16565T0/1-541 TAVAADCWKS SEPDKGQAGP WGCCQADPYD PCLQRRPEQH GSLGVPSAEP BACU016557/1-872 TAVAADCWKS SEPDKGQAGP WGCCQADPYD PCLQRRPEQH GSLDVPSAEP 751 800 ENSTTRP00000002128/1-964 VGRNPNL-KP PAHNPLSENA QGSEKMEEKE FSGCGSASSL NTSHHITPPA ENSP00000265026/1-966 VGRSPDLSKS PAHNPLLENA QSSEKTEENE FSGCRSESSL GTSHLGTPPA ENSBTAP00000022739/1-966 VGRSPSLFKP PAHNPLLENA QGSEKMEENE FSGYRSASSL GASHHITPPV bmy_16565T0/1-541 VRRSPNLFKP PAHNPLSENA QGSEKMEEKE FSGCGSAASL NTSHHITPPA BACU016557/1-872 VRRSPNLFKP PAHNPLSENA QGSEKMEEKE FSGCGSAASL NTSHHITPPA 801 850 ENSTTRP00000002128/1-964 LPRKTRPLQK SGDDSSEEEE GEVDSEVEFP RRQRPHRCIS SCQSYSTFSS ENSP00000265026/1-966 LPRKTRPLQK SGDDSSEEEE GEVDSEVEFP RRQRPHRCIS SCQSYSTFSS ENSBTAP00000022739/1-966 LPRKTRPLQK SGDDSSEEEE GEVDSEVEFP RRQRPHRCIS SCQSYSTFSS bmy_16565T0/1-541 LPRKTRPLQK SGDDSSEEEE GEVDSEVEFP RRQ------- --------SS BACU016557/1-872 LPRKTRPLQK SGDDSSEEEE GEVDSEVEFP RRQRPHRCIS SCQSYSTFSS 851 900 ENSTTRP00000002128/1-964 ENFSVSDGEE GNTSDHSNSP EELVDKLEDR LAEKLDDLLS QTPEIPIEIS ENSP00000265026/1-966 ENFSVSDGEE GNTSDHSNSP DELADKLEDR LAEKLDDLLS QTPEIPIDIS ENSBTAP00000022739/1-966 ENFSVSDGEE GNTSDHSNSP DELADKLEDH LAEKLDDLLS QTPEIPIEIS bmy_16565T0/1-541 ENFSVSDGEE GNTSDHSNSP DELXDKLEDR LAEKLDDLLS QTPEIPIEIS BACU016557/1-872 ENFSVSDGEE GNTSDHSNSP DELADKLEDR LAEKLDDLLS QTPEIPIEIS 901 950 ENSTTRP00000002128/1-964 SHSDGLSDKE CAVRRVKTQM SLGKLCAEDR GYENPMQFEE SD----CD-- ENSP00000265026/1-966 SHSDGLSDKE CAVRRVKTQM SLGKLCVEER GYENPMQFEE SD----CD-- ENSBTAP00000022739/1-966 SHSDGLSDKE CAVRRVKTQM SLGKLCAEER GYENPMQFEE SD----CD-- bmy_16565T0/1-541 SHSDGLSDKE CAVRRVKTQM SLGKLCTEDR GYESELYMIE RKTIISCKKK BACU016557/1-872 SHSDGLSDKE CAVRRVKTQM SLGKLCTEDR GYENPMQFEE SD----CD-- 951 1000 ENSTTRP00000002128/1-964 ---------- ---------- ---------- ---------- ---------- ENSP00000265026/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022739/1-966 ---------- ---------- ---------- ---------- ---------- bmy_16565T0/1-541 REREKERRKE QKWNSGATSL GICGARRYCL CPESSLHKPQ YLSELTGKED BACU016557/1-872 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000002128/1-964 --SSDGERSD ATVRTNKHY- --SSATW--- --------- ENSP00000265026/1-966 --SSDGECSD ATVRTNKHY- --SSATW--- --------- ENSBTAP00000022739/1-966 --SSDGECSD ATVRTNKHY- --SSATW--- --------- bmy_16565T0/1-541 WVSRSQERHD WVSRSQEKWV MGKAGFWGSF VRHIHRRKR BACU016557/1-872 --SSDGERSD ATVRTNKHY- --SSATW--- ---------