KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:35 2014 Check: 00 .. Name: ENSP00000265342/1-842 Len: 849 Check: 576 Weight: 1.00 Name: ENSBTAP00000022743/1-601 Len: 849 Check: 6101 Weight: 1.00 Name: ENSTTRP00000002773/1-833 Len: 849 Check: 2533 Weight: 1.00 Name: bmy_22559T0/1-507 Len: 849 Check: 8407 Weight: 1.00 Name: BACU018683/1-787 Len: 849 Check: 4916 Weight: 1.00 // 1 50 ENSP00000265342/1-842 MKPGGFWLHL TLLGASLPAA LGWMDPGTSR GPDVGVGESQ AEEPRSFEVT ENSBTAP00000022743/1-601 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002773/1-833 MKPGCFWLHL TLLGASLPAA LGWMNPGTSR GLNMGVGESR EEESRRLEVT bmy_22559T0/1-507 ---------- ---------- ---------- ---------- ---------- BACU018683/1-787 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000265342/1-842 RREGLSSHNE LLASCGKKFC SRGSRCVLSR KTGEPECQCL EACRPSYVPV ENSBTAP00000022743/1-601 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002773/1-833 RREGLSGHRG LPASCRKKFC SHGSRCALSR ETGEPECRCL EACSPSYVPV bmy_22559T0/1-507 ---------- ---------- ---------- ---------- ---------- BACU018683/1-787 ---GLSGHRG LPASCRKKFC SRGSRCTLSR ETGEPKCRCL EACSPSYVPV 101 150 ENSP00000265342/1-842 CGSDGRFYEN HCKLHRAACL LGKRITVIHS KDCFLKGDTC TMAGYARLKN ENSBTAP00000022743/1-601 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002773/1-833 CGSDGRVYEN HCELHRAACL LGKKIAIVHS KDCFLKGNPC TMADYARLKK bmy_22559T0/1-507 ---------- ---------- ---------- ---------- ---------- BACU018683/1-787 CGSDGRVYEN HCELHRAACL LGKKIVIVRS KDCFLKGDPC TMADYARLKK 151 200 ENSP00000265342/1-842 VLLALQTRLQ PLQEGDSRQD PASQKRLLVE SLFRDLDADG NGHLSSSELA ENSBTAP00000022743/1-601 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002773/1-833 ALLALQTRLQ PLHEGDSRQD PASQKRLLVE SLFKDLDVDG DGHLSRSELA bmy_22559T0/1-507 ---------- ---------- ---------- ---------- ---------- BACU018683/1-787 ALLALQTRLQ SLHEGDSRQD PASQKRLLVE SLFKDLDVDG DGHLSRSELT 201 250 ENSP00000265342/1-842 QHVLKKQDLD EDLLGCSPGD LLRFDDYNSD SSLTLREFYM AFQVVQLSLA ENSBTAP00000022743/1-601 ---------- ---------- ---------- ---------- --EVVQLSLA ENSTTRP00000002773/1-833 QHMLKEQGLE EDFLGCSPGD LLRFDDDNKD GLLTLHEFYT AFQVVQLSLA bmy_22559T0/1-507 ---------- ---------- ---------- ---------- ---------- BACU018683/1-787 QHVLKEQALE EDFLGCSPGD LLRFDDYNKD GLLTLHEFYT AFQVVQLSLA 251 300 ENSP00000265342/1-842 PEDRVSVTTV TVGLSTVLTC AVHGDLRPPI IWKRNGLTLN FLDLEDINDF ENSBTAP00000022743/1-601 PEERVSVATV TVGLSTVLTC AIRGDLRPPI VWKRNGLALN FLDLEDINDF ENSTTRP00000002773/1-833 PEERVSVATV TVGLSTVLTC AVHGDLRPPI VWKRNGLALN FLDLEDINDF bmy_22559T0/1-507 ---------- ---------- ---------- ---TKNASPN F--------- BACU018683/1-787 PEERVSVATV TVGLSTVLTC AVHGDLRPPI VWKRNGLALN FLDLEDINDF 301 350 ENSP00000265342/1-842 GEDDSLYITK VTTIHMGNYT CHASGHEQLF QTHVLQVNVP PVIRVYPESQ ENSBTAP00000022743/1-601 GEDDSLYITK VTTIHMGNYT CHASGHEQLF QTHVLQVNVP PVIRVYPETQ ENSTTRP00000002773/1-833 GEDDSLYITK VTTIHMGNYT CHASGYEQLF QTHVLQVNVP PVIRVYPETQ bmy_22559T0/1-507 ---------- ---------- ---------- ------PKVP PVIRVYPETQ BACU018683/1-787 GEDDSLCITK VTTIHMGNYT CHASGYEQLF QTHVLQVNVP PVIRVYPETQ 351 400 ENSP00000265342/1-842 AQEPGVAASL RCHAEGIPMP RITWLKNGVD VSTQMSKQLS LLANGSELHI ENSBTAP00000022743/1-601 AQEPGVAASL RCHAEGIPMP RITWLKNGMD VSTQMSKQLS LLANGSELHI ENSTTRP00000002773/1-833 AQEPGVAASL RCHAEGIPMP RITWLKNGMD VSTQMSKQLS LLANGSELHI bmy_22559T0/1-507 AQEPGVAASL RCHAEGIPMP RITWLKNGMD VSTQMSKQLS LLANGSELHI BACU018683/1-787 AQEPGVAASL RCHAEGIPMP RITWLKNGMD VSTQMSKQLS LLANGSELHI 401 450 ENSP00000265342/1-842 SSVRYEDTGA YTCIAKNEVG VDEDISSLFI EDSARKTLAN ILWREEGLSV ENSBTAP00000022743/1-601 GSVRYEDTGA YTCIAKNEVG VDEDISSLFI EDSARKTLAN ILWREEGLSV ENSTTRP00000002773/1-833 SSVRYEDTGA YTCIAKNEVG VDEDISSLFI EDSARKTLAN ILWREEGLSV bmy_22559T0/1-507 GSVRYEDTGA YTCIAKNEVG VDEDISSLFI EDSARKT--- ------RLSV BACU018683/1-787 SSVRYEDTGA YTCIAKNEVG VDEDISSLFI EDSARKTLAN ILWREEGLSV 451 500 ENSP00000265342/1-842 GNMFYVFSDD GIIVIHPVDC EIQRHLKPTE KIFMSYEEIC PQREKNATQP ENSBTAP00000022743/1-601 GNMFYVFSDD GIIVLHPVDC EIQRHLKPTE KIFMSYEEIC PQKDGDATQP ENSTTRP00000002773/1-833 GNMFYIFSDD GIIILHPVDC EIQRHLRPTE KIFMSYEEIC PQREGGATHP bmy_22559T0/1-507 GNMFYIFSDD GIIVLHPVDC EIQRHLKPTE KIFMSYEEIC PQREGGATQP BACU018683/1-787 GNMFYIFSDD GIIVLHPVDC EIQRHLKPTE KIFVSYEEIC PQREGGATQP 501 550 ENSP00000265342/1-842 CQWVSAVNVR NRYIYVAQPA LSRVLVVDIQ AQKVLQSIGV DPLPAKLSYD ENSBTAP00000022743/1-601 CQWASAVNVR HHYIYVAQPT LSRVLVVDVQ AQKVLQSIGV DPLPAKLSYD ENSTTRP00000002773/1-833 CQWASAVNVR HRYIYVAQPT LSRVLVVDVQ AQKVLQXXXX XXXXXXXXXX bmy_22559T0/1-507 CQWASAVNVR DRYIYVAQPA LSRVLVVDVQ AQKVLQSIGV DPLPAKLAYD BACU018683/1-787 CQWASAVNVR DRYIYVAQPA LSRVLVVDVQ AQKVLQ---- ----VHLSEG 551 600 ENSP00000265342/1-842 KSHDQVWVLS WGDV-----H KSRPSLQVIT EASTGQSQHL IRTPFAGVDD ENSBTAP00000022743/1-601 KSHDQVWVLS WGNV-----H KSQPSLQVIT EASTGQGQRL IRTPFAGVDD ENSTTRP00000002773/1-833 XXXXXXXXXX XXXX-----X XXXXXXXVIT EASTGQGQHL IRTPFAGVDD bmy_22559T0/1-507 KSHDQVWVLS WGNV-----H KSQPSLQVIT EASTSQGQHL IRTPFAGVDD BACU018683/1-787 RGSLQFWGTA -GHILLCFPH TPQLLGEVIT EASTGQGQHL IRTPFAGVDD 601 650 ENSP00000265342/1-842 FFIPPTNLII NHIRFGFIFN KSDPAVHKVD LETMMPLKTI GLHHHGCVPQ ENSBTAP00000022743/1-601 FFIPPTNLII NHIRFGFIFN KSDPAIHKVD LETLMPLKTI KLQSHGCLPQ ENSTTRP00000002773/1-833 FFIPPTNLII NHIRFGFIFN KSDPAVHKVD LETLMLLKTI GLQSHGCLPQ bmy_22559T0/1-507 FFIPPTNLII NHIRFGFIFN KSDPAVHKVD LETLMLLKTI GLQSHGCLPQ BACU018683/1-787 FFIPPTNLII NHIRFGFIFN KSDPAVHKVD LETLMLLKTI GLQSHGCLPQ 651 700 ENSP00000265342/1-842 AMAHTHLGGY FFIQCRQDSP ASAARQLLVD SVTDSVLGPN GDVTGTPHTS ENSBTAP00000022743/1-601 AMAHTHLGGY FFVQCRQDSS SEASPQLLID SVTDTVVGPN GQVTGTPHTS ENSTTRP00000002773/1-833 AMAHTHLGGY FFIQCRQHSS SPAAPQLLLD SVTDAVVGPN GHVTGTPHIS bmy_22559T0/1-507 AMAHTHLGGY FFIQCRQHSS SPAAPQLLLD SVTDAVVGPN GHVTGTPHTS BACU018683/1-787 AMAHTHLGGY FFIQCRQHSP SPAAPQLLLD SVTDAVVGPN GHVTGTPHTS 701 750 ENSP00000265342/1-842 PDGRFIVSAA ADSPWLHVQE ITVRGEIQTL YDLQINSGIS DLAFQRSFTE ENSBTAP00000022743/1-601 PDGRFVVSAA PGSPQLHVQE ISLRGEIRTL YNLKVSPGVS DVAFQRSFTQ ENSTTRP00000002773/1-833 PDGRFLVSLS SP---LHVQE ITLRGEIQTL Y-LKVSQGVS DVA---SLLT bmy_22559T0/1-507 PDGRFLVSAA SSSPQLHVQE ITLRGEIQTL YDLKVSQGVS DVAFQPSFTQ BACU018683/1-787 PDGRFLVSAA SSSPQLHVQE ITLRGEIQTL YDLKVSQGVS DVAFQPSFTQ 751 800 ENSP00000265342/1-842 SNQYNIYAAL HTEPDLLFLE LSTGKVGMLK NLKEP--PAG PAQPWGGTHR ENSBTAP00000022743/1-601 GDQYHVYATL ETEPDLLFLE LSTGKMGVLK GLKEP-APAG PARAWAGPRR ENSTTRP00000002773/1-833 GDQYYVY-TL ETEP--LLLE LSTGKTGMLK G-KEPPAPAG PARAWAGTRR bmy_22559T0/1-507 GDQYYVYATL ETEPDLLFLE LSTGKTGMLK GLKEPPAPAG PARAWAGPRR BACU018683/1-787 GDRYYVYATL ETEPDLLFLE LSTGKTGVLK GLKEPPAPAG PARAWAGPRR 801 850 ENSP00000265342/1-842 IMRDSGLFGQ YLLTPARESL FLINGRQNTL RCEVSGIKGG TTVVWVGEV ENSBTAP00000022743/1-601 IVRDSGLFGQ HLLTPARESL FLINGRQNAL RCEVAGVKGG TTVVWVGEV ENSTTRP00000002773/1-833 IVRDSGLFGQ YLLTPARESL FLINARQNAP RCEVAGVKGG TTVVWVGEV bmy_22559T0/1-507 IVRDSGLFGQ YLLTPARESL FLINARQNAP RCEVAGVKGG TTVVWVGEV BACU018683/1-787 IVRDSGLFGQ YLLTPARESL FLINARQNAP RCEVAGVKGG TTVVWVGEV