KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:54 2014 Check: 00 .. Name: ENSP00000295897/1-609 Len: 2003 Check: 2579 Weight: 1.00 Name: ENSBTAP00000022763/1-607 Len: 2003 Check: 878 Weight: 1.00 Name: ENSTTRP00000006225/1-623 Len: 2003 Check: 9507 Weight: 1.00 Name: bmy_20627T0/1-605 Len: 2003 Check: 5079 Weight: 1.00 Name: BACU008222/1-2002 Len: 2003 Check: 6900 Weight: 1.00 // 1 50 ENSP00000295897/1-609 ---------- ---------- ---MKWVTFI SL---LFLFS SAYSRGVFRR ENSBTAP00000022763/1-607 ---------- ---------- ---MKWVTFI SL---LLLFS SAYSRGVFRR ENSTTRP00000006225/1-623 ---------- ---------- ---MKWVTFI SL---IFLFS SAYSRGVFRR bmy_20627T0/1-605 ---------- ---------- ---MKWVTFI SL---IFLFS SAYSRGVFRR BACU008222/1-2002 MSSFHTGVII RQSSFIGTNE PRECKFEALQ SVELHSYLKS SAYSRGVFRR 51 100 ENSP00000295897/1-609 DAHKSEVAHR FKDLGEENFK ALVLIAFAQY LQQCPFEDHV KLVNEVTEFA ENSBTAP00000022763/1-607 DTHKSEIAHR FKDLGEEHFK GLVLIAFSQY LQQCPFDEHV KLVNELTEFA ENSTTRP00000006225/1-623 DTHKSEIAHR FNDLGEENFK GLVLIAFSQY LQQSPFDEHV KLVNEITDFA bmy_20627T0/1-605 DTHKSEIAHR FNDLGEENFK GLVLIAFSQY LQQSPFDEHV KLVNEVTELA BACU008222/1-2002 DTHKSEIAHR FNDLGEENFK GLVLIAFSQY LQQSPFDEHV KLVNEVTELA 101 150 ENSP00000295897/1-609 KTCVADESAE NCDKSLHTLF GDKLCTVATL RETYGEMADC CAKQEPERNE ENSBTAP00000022763/1-607 KTCVADESHA GCEKSLHTLF GDELCKVASL RETYGDMADC CEKQEPERNE ENSTTRP00000006225/1-623 KTCVADESAA NCDKSLHTLF GDKLCAVASL RETYGEMADC CGKQDPERNE bmy_20627T0/1-605 KTCVADESAA NCDKSLHTLF GDKLCTVASL RETYGEMADC CAKQEPERNE BACU008222/1-2002 KACVADESAA NCDKSLHTLF GDKLCAVASL RETYGEMADC CAKQEPERNE 151 200 ENSP00000295897/1-609 CFLQHKDDNP NLPRLVRPEV DVMCTAFHDN EETFLKKYLY EIARRHPYFY ENSBTAP00000022763/1-607 CFLSHKDDSP DLPKL-KPDP NTLCDEFKAD EKKFWGKYLY EIARRHPYFY ENSTTRP00000006225/1-623 CLLKHKDDNP DLPKL-KPDP ETFCTEFKEN EQKFWGKYLY EIARRHPYFY bmy_20627T0/1-605 CFLKHKDDNP DLPKL-KPDP DTLCAEFKEN EQKFWGKYLY EIGRRHPYFY BACU008222/1-2002 CFLKHKDDNP DLPKL-KPDP DTLCSEFKEN EQKFWGKYLY EIGRRHPYFY 201 250 ENSP00000295897/1-609 APELLFFAKR YKAAFTECCQ AADKAACLLP KLDELRDEGK ASSAKQRLKC ENSBTAP00000022763/1-607 APELLYYANK YNGVFQECCQ AEDKGACLLP KIETMREKVL TSSARQRLRC ENSTTRP00000006225/1-623 APELLYFAHQ YKGVFGECCQ AADKGACLIP KILEKK---- ASSARQRLKC bmy_20627T0/1-605 APELLYYAHQ YKGVFAECCQ AADKGACLIP KIESVREEVL ASSARQRLKC BACU008222/1-2002 APELLYYAHQ YKGVFAECCQ AADKGACLIP KIESVREQVL ASSARQRLKC 251 300 ENSP00000295897/1-609 ASLQKFGERA FKAWAVARLS QRFPKAEFAE VSKLVTDLTK VHTECCHGDL ENSBTAP00000022763/1-607 ASIQKFGERA LKAWSVARLS QKFPKAEFVE VTKLVTDLTK VHKECCHGDL ENSTTRP00000006225/1-623 TSIQKFGERA LKAWSVARLS QKFPKADFAE VSKIVTDLTK VHKECCHGDL bmy_20627T0/1-605 TSIQKFGERA LKAWSVARLS QKFPKADFAE VSKIVTDLTK VHKECCHGDL BACU008222/1-2002 TSIQKFGERA LKAWSVARLS QKFPKADFAE VSKIVTDLTK VHKECCHGDL 301 350 ENSP00000295897/1-609 LECADDRADL AKYICENQDS ISSKLKECCE KPLLEKSHCI AEVENDEMPA ENSBTAP00000022763/1-607 LECADDRADL AKYICDNQDT ISSKLKECCD KPLLEKSHCI AEVEKDAIPE ENSTTRP00000006225/1-623 LECADDRADL AKYICENQAT ISSKLQKCCH KPLLEKSHCI SEVEKDELPE bmy_20627T0/1-605 LECADDRADL AKYICENQAT ISAKLKECCD KPLLEKSHCI AEVEKDEVPE BACU008222/1-2002 LECADDRADL AKYICENQAT ISAKLKECCD KPLLEKSHCI AEVQKDELPE 351 400 ENSP00000295897/1-609 DLPSLAADFV ESKDVCKNYA EAKDVFLGMF LYEYARRHPD YSVVLLLRLA ENSBTAP00000022763/1-607 NLPPLTADFA EDKDVCKNYQ EAKDAFLGSF LYEYSRRHPE YAVSVLLRLA ENSTTRP00000006225/1-623 NLSLLAADFA EDKEVCKNYN EAKDVFLGTF LYDYARRHPE YSVSLLLRIA bmy_20627T0/1-605 NLSPIAADFA EDKEVCKNYN EAKDVFLGTF LYEYARRHPE YSVSLLLRIA BACU008222/1-2002 NLSPVAADFA EDKEVCKNYN EAKDVFLGTF LYEYARRHPE YSVSLLLRIA 401 450 ENSP00000295897/1-609 KTYETTLEKC CAAADPHECY AKVFDEFKPL VEEPQNLIKQ NCELFEQLGE ENSBTAP00000022763/1-607 KEYEATLEEC CAKDDPHACY STVFDKLKHL VDEPQNLIKQ NCDQFEKLGE ENSTTRP00000006225/1-623 KGYEATLEDC CAKDDPPACY ATVFEKLRPL VEEPKNLIKQ NCELFEKLGE bmy_20627T0/1-605 KGYEATLEDC CAKDDPPACY ATVFEKLQPL VDEPQNLIKQ NCELFEKLGE BACU008222/1-2002 KGYEATLEDC CAKDDPPACY ATVFEKLQPL VDEPQNLIKQ NCELFEKLGE 451 500 ENSP00000295897/1-609 YKFQNALLVR YTKKVPQVST PTLVEVSRNL GKVGSKCCKH PEAKRMPCAE ENSBTAP00000022763/1-607 YGFQNALIVR YTRKVPQVST PTLVEVSRSL GKVGTRCCTK PESERMPCTE ENSTTRP00000006225/1-623 YQFQNALIVR YTKKVPQVST PTLVEVSRNL GRVGSKCCKN PESERMSCAE bmy_20627T0/1-605 YLFQNALIVR YTKKVPQVST PTLVEVSRNL GKVGSRCCKH PESERMSCAE BACU008222/1-2002 YLFQNALIVR YTKKVPQVST PTLVEVSRNL GKVGSKCCTH PESERMSCAE 501 550 ENSP00000295897/1-609 DYLSVVLNQL CVLHEKTPVS DRVTKCCTES LVNRRPCFSA LEVDETYVPK ENSBTAP00000022763/1-607 DYLSLILNRL CVLHEKTPVS EKVTKCCTES LVNRRPCFSA LTPDETYVPK ENSTTRP00000006225/1-623 DYLSLVLNRL CVLHEKTPVS ERVTKCCTES LVNRRPCFSA LTVDETYEPK bmy_20627T0/1-605 DYLSLVLNRL CVLHEKTPVS ERVTKCCTES LVNRRPCFSA LTVDETYEPK BACU008222/1-2002 DYLSLVLNRL CVLHEKTPVS ERVTKCCTES LVNRRPCFSA LTVDETYEPK 551 600 ENSP00000295897/1-609 EFNAETFTFH ADICTLSEKE RQIKKQTALV ELVKHKPKAT KEQLKAVMDD ENSBTAP00000022763/1-607 AFDEKLFTFH ADICTLPDTE KQIKKQTALV ELLKHKPKAT EEQLKTVMEN ENSTTRP00000006225/1-623 AFDEKTFTFH ADLCTLPENE KQIKKQIALV ELVKHKPKVT EEQLKTVMGD bmy_20627T0/1-605 AFDEKTFTFH ADLCTLPENE KQIKKQIALV ELVKHKPKVT EEQLKTVMAN BACU008222/1-2002 AFDEKTFTFH ADLCTLPENE KQIKKQIALV ELVKHKPKVT EEQLKTVMGN 601 650 ENSP00000295897/1-609 FAAFVEKCCK ADDKETCFAE E--------- ---------- ---------- ENSBTAP00000022763/1-607 FVAFVDKCCA ADDKEACFAV E--------- ---------- ---------- ENSTTRP00000006225/1-623 FAAFVDKCCA ADDKEACFAL E--------- ---------- ---------- bmy_20627T0/1-605 FAAFVDKCCA ADDKEPCFAL E--------- ---------- ---------- BACU008222/1-2002 FAAFVDKCCA ADVKETCFAL EFVQEATYKE VSQMVKDVLT VIEKSTGSEQ 651 700 ENSP00000295897/1-609 ---------- ---------- ------GKKL VAASQ----- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ------GPKL VVSTQ----- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ------GQKT CCNSRSH--- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 PAGCLENQVS AFLEEICHEK EIPEKYGLSD CCSQSGEERH DCFLAHKKAA 701 750 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 PASIPPFQVP EPVTSCKAYE EDRELFMNRY VYEIARRHPF LYAPTILSLA 751 800 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 AQYDKIIPPC CKAENAVECF QTKAASITKE LRESSLLNQH ICAVMRKFGP 801 850 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 RTFRAITVTK LSQKFPKANF TEIQKLVVDV AHVHEECCRG NVLECLQDGE 851 900 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 KIMSYICSQQ DILSSKIAEC CKLPTTLELG HCIIHAENDD KPEGLSSTLN 901 950 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 RFLGETDFNQ LSSREKDLYM ARFLVAYTKK APQLTPAELM TLTRKMATAG 951 1000 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 ATCCHLSEDK QLACGEGAAD LIIGLLCIRH EETPVNPGVG QCCTSSYANR 1001 1050 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ------SLKR bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 RPCFSSLVVD ETYVSPPFSD DKFIFHRDLC QAQGVALQTM KQQFLINLVK 1051 1100 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 TQPQASQ--- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 QKPQITEEQL EAVIADFSGL LEKCCQGQGQ EVCFEEEEAS FEEVEMLVKA 1101 1150 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 MTEYRDKCLA DMTLPECSKL ANDVLLENIC AMEGLPQKHN FSHCCHKADF 1151 1200 ENSP00000295897/1-609 ---------- ---------- AALGL----- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- TALA------ ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- PTLR------ ---------- ---------- bmy_20627T0/1-605 ---------- ---------- PTLR------ ---------- ---------- BACU008222/1-2002 ERKHCFLHNK KADVGFLPPL PTLDPEEKCQ TYKNNRESFL NNYIYKVSRR 1201 1250 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 NPFVFVPTLL TAAARFEEMT KICCEEQEKA NCFRTKAETF IQYLKALSSY 1251 1300 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 QKNVCGALMK FGPQILKSIN IAVLSQKFPK IEFKELISLL EDVSSKYDGC 1301 1350 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 --------VR GKKEK----- ---------- ---------- ---------- bmy_20627T0/1-605 --------VR GKKEK----- ---------- ---------- ---------- BACU008222/1-2002 CEGDVVQCIH GRENKFNETT EKSLKIVQRE CEHFQILGKD DLKYHYLINL 1351 1400 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 TKLAPQLSTE ELTFLGKEMV TALTTCCTLS EEFACVDNLV DLVLGELCGI 1401 1450 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 NENRSINPAV DHCCKTNFAF RRSCFEGLEA DKTYVPASTS QGLFIFHADL 1451 1500 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 CQAHNEELQR KKDRFLVNLV KLKPELTGVE LQSLLADFTN VVKKCCQAQG 1501 1550 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 PEACFKEEFL QKLTYEKVQT IVKELLDLAE KCKSLKPHES PSECCHQLMT 1551 1600 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 TFLEHICNNQ VLADRHVFSD CCNTNNSARH KCFLSYKKDV AGYSDIFQIS 1601 1650 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 NPEQICEIDK ENPVPVKEKY IYETSRKHPF LYGPTILTMS ACYETAVQSC 1651 1700 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 CREENKTECS QIKLEPIRKY VREISLRHHH LCEIGIKFNH KVAKAVELVL 1701 1750 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 LTKKQPRANF SEIAKLAMDI KNLHQICCEG NAVACVLGRS QLMNYTCSKQ 1751 1800 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 ATLSSKITPC CELPEPFRGE CIIISENDEP DPSSLPLSRF TEDQFEEMFQ 1801 1850 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 RVVRESHEHV KNQCDLHEKL GDSNFHDRLI VLYTKKAPQL SAQELVIFTK 1851 1900 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 NMAAAATKCC PLNDEQQFAC MENSAKLILG ALCRRHEAEP INAGVGHCCD 1901 1950 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 DSYAFRKPCF DDLQVDATYI SPHLSCDQVV NLNEDLCRAQ EEELQTEKQK 1951 2000 ENSP00000295897/1-609 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022763/1-607 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006225/1-623 ---------- ---------- ---------- ---------- ---------- bmy_20627T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU008222/1-2002 LLSNLVKQEP YAAEMQFQSV IVDFAHLVEM CCQAEKSEIC LQEEVSLFPC 2001 2050 ENSP00000295897/1-609 --- ENSBTAP00000022763/1-607 --- ENSTTRP00000006225/1-623 --- bmy_20627T0/1-605 --- BACU008222/1-2002 LFS