KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:56 2014 Check: 00 .. Name: bmy_14872T0/1-389 Len: 575 Check: 3376 Weight: 1.00 Name: ENSTTRP00000000673/1-568 Len: 575 Check: 8510 Weight: 1.00 Name: BACU000234/1-446 Len: 575 Check: 6592 Weight: 1.00 Name: ENSP00000360323/1-569 Len: 575 Check: 2309 Weight: 1.00 Name: ENSBTAP00000022771/1-569 Len: 575 Check: 5074 Weight: 1.00 // 1 50 bmy_14872T0/1-389 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000673/1-568 MAEPEAAAEE VDALIDDLDY LPGHFHLEMQ LNFEPRSPAS LHARDLKLQR BACU000234/1-446 ---------- ---------- ---------- ---------- ---------- ENSP00000360323/1-569 MAELEAVADD LDALIDDLDY LPGHFHLEMQ LNFEPRSPAP QRARDLKLQR ENSBTAP00000022771/1-569 MAEPEVAAED LDALIDDLDY LPGHFHLEMQ LNFEPRSPVS LRARDLKLQR 51 100 bmy_14872T0/1-389 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000673/1-568 DGLRQELALT AATQRPAVRH LLGAFAFYLE ELDEARESFL EVAREDPGNL BACU000234/1-446 ---------- ---------- ---------- ---------- ---------- ENSP00000360323/1-569 EGLRQELQLA AAPQRPAVRH LLGAFAFYLE ELDEARECFL EVAHEHPGNL ENSBTAP00000022771/1-569 EGLRQELELA SAPQRPAVRH LLGAFAFYLE ELEEARERFL EVAREDPGNL 101 150 bmy_14872T0/1-389 ---------- ---------- ---------- ---------- ---------M ENSTTRP00000000673/1-568 NAWANLVHVY GRLGQKEEEE ACAERLAGLM GLAGDRGAAG DPPLRAARCL BACU000234/1-446 ---------- ---------- ---------M GLAGDRGAAG DTPLRAARCL ENSP00000360323/1-569 NAWANLAHVY GRLGQEEEEE ACAARLADLM GLAEEPEAAG DPQLRAARCL ENSBTAP00000022771/1-569 NAWANLAHVY GRLGQEEEEE ACAGQLASLM GLAGDRGAAE DPQLRAARCL 151 200 bmy_14872T0/1-389 APKGRSGGER IG-------- ---------- -DWWSVGPAI PKEEKRGWYF ENSTTRP00000000673/1-568 AEQGYAHGFD VGCASPEERA RVLEAGIELY VKALGHAQQI PNEEKRGWYF BACU000234/1-446 AEQGYAHGFD VSCASPEERA RVLEAGIELY DKALGHGQQI PKEEKRGWYF ENSP00000360323/1-569 AEQGYAHGFD VGCASPEERA RGLAAGIALY DKALGYGQQI PMEEKRGWYF ENSBTAP00000022771/1-569 AEQGYAHGFD VGCASPEERA RVLEAGIALY DKALGYAQQI PMEEKRGWYF 201 250 bmy_14872T0/1-389 TMATLFIRLD GIFLELGSEE QKRLPAFNRT LALLRQTPLP ASPPA----- ENSTTRP00000000673/1-568 TMEKLFIRLD GIFLELGSEE QKRLPAFNRT LALLQQVLKS SEPHHQA--- BACU000234/1-446 TMATLFIRLD GIFLELGSEE QKRLPAFNRT LALLRQVLKS SEPHHQGRTP ENSP00000360323/1-569 TMATLYIRLD GIFLELGSEE QKRLPAFNRT LALLRQVLKS EDPRHRA--- ENSBTAP00000022771/1-569 TMATLFIRLD GIFLELGSKE QKRLPAFNRT LALLQQVLKS SDPHPRA--- 251 300 bmy_14872T0/1-389 LAWCYLGMLL ERKDTFSITP MGVHDCGFSG TDPLDCFGKA IEIAKDQPSI ENSTTRP00000000673/1-568 LAWCYLGMLL ERKDTFSITP MGIHDCGFSG TDPLDCFGKA IEIAKDQPPI BACU000234/1-446 LAWCYLGMLL ERKDTFSITP MGVHDCGFSG TDPLDCFGKA IEIAKDKPPI ENSP00000360323/1-569 LAWCYLGMLL ERKDTFSTTP MGVHDCGYSG TDPLDCFGKA IEIAKNQPPI ENSBTAP00000022771/1-569 LAWCYLGMLL ERKDTFSTTP MGVHDCGFSG TDPLDCFGKA IEIAKDQLPI 301 350 bmy_14872T0/1-389 LNHLAKIFHF LGKQDMAIGT CNIALDILRD PELNWQAYCT RAKIHVRAYL ENSTTRP00000000673/1-568 LNHLAKIFHF LGKQDMAMGT CNMALDTLRD PELNWQAYCT RAKIHVRAYL BACU000234/1-446 LNHLAKIFHF LGKQDMAIGT CNMALDILRD PELNWQAYCT RAKIHVRAYL ENSP00000360323/1-569 LNRLAKIFYF LGKQDMAIGT CNMALDVLRD PELNWQAYCT RAKIHIRAYL ENSBTAP00000022771/1-569 LNRLAKIFHF LGKQDMAIGT CNMALDVLRD PELNWQAYCT RAKIHIRAYL 351 400 bmy_14872T0/1-389 HDLERSKMGL GGMPDRNHLA CAKADLEEVV K--------- ----VYYYMG ENSTTRP00000000673/1-568 HDLERSKMGL GGMPDRNHLA CAKADLEEVV KVCPGLKTYL NIGQVYYYMG BACU000234/1-446 HDLERSKMGL GGMPDRNHLA CAKADLEEVV KVCPGLKTYL DIGQVYYYMG ENSP00000360323/1-569 HDLKRAKMGL GGMPDRNHLA CAKADLEEVV RVCPGFKAYL DIGQVYYYMG ENSBTAP00000022771/1-569 HDLERGKLGL GGMPDRNHLA CAKADLEEVV KVCPGLKTYL DIGQVYYYMG 401 450 bmy_14872T0/1-389 VDAVQELLAV DEAALNQALV FLAKAGESEL GATLPELQLL RGKCLRIKGE ENSTTRP00000000673/1-568 VDAVQEQLAV DEAALNQALV FLAKAGESEL GATLPELQLL RGKCLRIKGE BACU000234/1-446 VDAVQELLAV DEAALNQALV FLAKAGESEL GATLPELQVL RGKCLRIKGE ENSP00000360323/1-569 VDAVQELLAV DEAALNQALV FLAKAGESEL GATLPELQLL RGKCLRIKGE ENSBTAP00000022771/1-569 VDAVQELLAV DEAALNQALV FLAKAGESEL GATLPELQLL RGKCLRIKGE 451 500 bmy_14872T0/1-389 EANAVACFKR AVELDDAGSS HTEAFGCLLE ALLAQWSQAQ LSDGELGSEV ENSTTRP00000000673/1-568 EANAAACFKR AVELDDAGSS HTEGFGCLLE VLLAQWSQAQ LSDGELGSEV BACU000234/1-446 EANAVACFKR AVELDDAGSS RTEAFGCLLE ALMAQWSQAQ LSDGELGSEV ENSP00000360323/1-569 DANAAACFKR AVELDDAGSS HTDGFGCLLE ALLAQWSQAQ LSDGELGREV ENSBTAP00000022771/1-569 EANAAACFKR AVELDDAGCS HAEGFGCLLE ALLAQWSQAQ LSDGEVGREV 501 550 bmy_14872T0/1-389 DAWLRCAQDK YPAARLRQEL QRVWRGHTGE VLGLARALVV QGRPALVRLL ENSTTRP00000000673/1-568 DAWLRCAQDK YPAARLRQEL QRVWRGHTGE VLGLARALVA QGRPALVRLL BACU000234/1-446 DAWLRCAQDK YPAARLRQEL QRVWRGHTGE VLGLARALVA QGRPALVRLL ENSP00000360323/1-569 DAWLRRAQDK YPAARLRQEL QRVWRGHTDE VLGLARALVA QGRPALVRLL ENSBTAP00000022771/1-569 DVWLRRAQDK YPAARLRQEL QRVWRAHTDE VLGLARALVA QGRPALVRLL 551 600 bmy_14872T0/1-389 FETMAREGEG TGPRRGRRAF SLGGP ENSTTRP00000000673/1-568 FETMQR--EG TGPRRGRRAF SFE-- BACU000234/1-446 FDTMAREGEG TGPRRGRRAF SFGGP ENSP00000360323/1-569 FETMEREGEG ASAPRDRRAV SF--- ENSBTAP00000022771/1-569 FETMERKGEG ASSLRDRRAF SV---