KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:18:59 2014 Check: 00 .. Name: ENSP00000360320/1-418 Len: 460 Check: 7123 Weight: 1.00 Name: bmy_14873T0/1-338 Len: 460 Check: 2698 Weight: 1.00 Name: ENSBTAP00000022787/1-414 Len: 460 Check: 841 Weight: 1.00 Name: ENSTTRP00000000671/1-409 Len: 460 Check: 2686 Weight: 1.00 Name: BACU000233/1-183 Len: 460 Check: 9262 Weight: 1.00 // 1 50 ENSP00000360320/1-418 MRESQDAAGA HGWNRVGSTA TKWFTGAPFG VQSHRFDISA VYPNWKKFST bmy_14873T0/1-338 ---------- --------MA TNWFTGAPFG ---------- ---------- ENSBTAP00000022787/1-414 RPESCEDFAA R--GQASIMA TKWFTGAPFG VQSHRFDVSA VYPNQKKLST ENSTTRP00000000671/1-409 ARQTHSSAGP RRGGRASAMA TNWFA--PLG ----GFDVSA VYPNQKKFSA BACU000233/1-183 ---------- --------MA TNWLAGAPFG VQSHRFDVSA VYPNQKKFST 51 100 ENSP00000360320/1-418 FTEAPYSTRY STQVSHIGPG TYSSKETCFS KKKLMKEVDT GWAKAQEATR bmy_14873T0/1-338 ---------- ----SHTGPG TYGCKDTCFS IKKLKKEVGT GCAKAQEATR ENSBTAP00000022787/1-414 FTEAPYSRVY SVDVSHIGPG TYGFKETCFS NEKLKKEVGT GWAKAQEATR ENSTTRP00000000671/1-409 FREAPYSRVY SVDVSHIGPV TYGCKETCFS IKKLKKEVGT GCAKAQEATW BACU000233/1-183 FTEATYSRVY SVDVSHVGPG TYGCKETCFS IKKLKKEVGT GWAKVQEATR 101 150 ENSP00000360320/1-418 LTQLPHFQYQ AIMKEKRLKE QKLGPGSYNL KDFLEQLREK PCSTRGLLSS bmy_14873T0/1-338 LTQLPHFQYR AIMKEKRQQK EELGPGSYNS KDFLEELQEK PG------RS ENSBTAP00000022787/1-414 LTQLPHFQYQ AIMKEKRQQK EKLGPGSYNF KDFLEELQSK PGSTRGLLSS ENSTTRP00000000671/1-409 LTQLPHF-YR AILKEKRQQK EELGPGSYNS NDFLEELQEK LGSTRGLLSS BACU000233/1-183 LTQLPHFQYR AILKEKRQQK EELGPDSYNS KDFLEELQEK PG------SS 151 200 ENSP00000360320/1-418 GEVRFRGLT- ------GNYY PGPGNYGEKG NPYTKLEENA WNRSHSEGLM bmy_14873T0/1-338 GEVRFGGLIE VGVLIHGNYY PGPGNYGEKG NPYTKLEESA WNWSHSKGLM ENSBTAP00000022787/1-414 GEIRFRGLI- ------GNYY PGPGNYGEKG NPFTKLEESA WNRSHSEGLM ENSTTRP00000000671/1-409 GEIRFRGLI- ------GNYY PGPGNYGEKG NPYTKLEESA WNRSHSKGLM BACU000233/1-183 GEVRFRGLI- ------G--- ---------- ---------- ---------- 201 250 ENSP00000360320/1-418 CRMSNKPHPR PYQGSGLGPG TYFFKSDLET Y--VARSVGT RGPYDTFSGD bmy_14873T0/1-338 CRMTNKPPPL AHQ-SHTGPG TYGCKDTCFS IKKLKKEVGT GCAKAQEATR ENSBTAP00000022787/1-414 CRMANKPPPL AHQGSGLAPG TYTFKSGIEV C--LAKITGT RGPYDIFSGD ENSTTRP00000000671/1-409 CRMTNKPPPL AHQGSSLALG TYTFKSGIET Y--LASM-GT CGLYDTFSDD BACU000233/1-183 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000360320/1-418 RSKPLPYGHY SMQKKKPRE- ------LMNF KSFVEELNSH HNKKHGV-FS bmy_14873T0/1-338 LTQLPHFQYR AIMKEKRQQK EELGPGSYNS KDFLEELQEK PGRSGEVRFG ENSBTAP00000022787/1-414 RSKPQPYGHY SVQKKRPRE- ------LTNF QSFVEELNLH HNKRRGV-FS ENSTTRP00000000671/1-409 QSKLQPYGH- SVQKKRPRE- ------LMNF KSFMEELNSC HNKKRGV-FS BACU000233/1-183 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000360320/1-418 KL-------- -----PRNPK TPTERIYW-- -------ANL SQCPRTL--- bmy_14873T0/1-338 GLIENYYPGP GNYGEKGNPY TKLEESAWNW SHSKGLMCRM TNKPPPLAHQ ENSBTAP00000022787/1-414 KV-------- -----PRNPQ TPTERIYW-- -------TTL SQCPRKL--- ENSTTRP00000000671/1-409 KV-------- -----PRNPE APPERIYW-- -------ATL SQCPPKL--- BACU000233/1-183 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000360320/1-418 ATSGPSFWLP QEKKCKPVNQ PPFLLTSKGS GAKACQMIMG SWNPVGVGRY bmy_14873T0/1-338 ATSGPGTWLP PEKECKHINQ PPFLLSSKRI GIKASQAILG TW-------- ENSBTAP00000022787/1-414 ATSGPGMWLP PEKECKRTSQ PPFLLSSKRT GSKAYQVIMG NWNPVGVGRY ENSTTRP00000000671/1-409 AMSGPGMWLP PEKECKHINQ PPFLLSPKRI GIKASPMILG TWNPVGVGRY BACU000233/1-183 ATSGPGTWLP PEKKCKHINQ PPFLLSSKRI GIKASQVILG TW-------- 401 450 ENSP00000360320/1-418 LNTWLMETKD RRQRYRSLFL SGSKRYLSDL ARDMLMQERI TPFTKGKCPP bmy_14873T0/1-338 ---------- ---------V GGSG------ ---------- ---------- ENSBTAP00000022787/1-414 LNTQLLETKD CRQRYRSLFM GGSKRYPSDP VREMIMQERI TPFTKGKCVP ENSTTRP00000000671/1-409 LNTQLMETKD HRQRYRSLFI GGSKRYLSDP ARDRLMQERI TPFTRGTCSP BACU000233/1-183 ---------- ---------V GGSG------ ---------- ---------- 451 500 ENSP00000360320/1-418 TVDYNSDPTP bmy_14873T0/1-338 ---------- ENSBTAP00000022787/1-414 TVDHNSDP-- ENSTTRP00000000671/1-409 TVDYNSDPIP BACU000233/1-183 ----------