KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:01 2014 Check: 00 .. Name: ENSP00000423660/1-1288 Len: 1326 Check: 23 Weight: 1.00 Name: ENSBTAP00000022793/1-1289 Len: 1326 Check: 4640 Weight: 1.00 Name: ENSTTRP00000007941/1-1289 Len: 1326 Check: 3289 Weight: 1.00 Name: BACU013127/1-1227 Len: 1326 Check: 4006 Weight: 1.00 Name: bmy_11264T0/1-1049 Len: 1326 Check: 3421 Weight: 1.00 // 1 50 ENSP00000423660/1-1288 MGGCFCIPRE RSLTRGPGKE TPSKDPTVSS ECIASSEYKE KCFLPQNINP ENSBTAP00000022793/1-1289 MGGCFCIPGE PSLSWGPGKD TSSKDPTISS EFISSSENKE KCFLPQNMIP ENSTTRP00000007941/1-1289 MGGCFCIPWE PSLSWGPGKE TSSKDPTIST EIISSSENKE KCFLPQNMTP BACU013127/1-1227 ---------- ---------- ---------- ---------- ---------- bmy_11264T0/1-1049 ------MSRN TGPECKRGKG TSSKDPTISS EIISSSENKE KCFLPQNMTP 51 100 ENSP00000423660/1-1288 DLTLSFCVKS RSRRCVNGPL QEAARRRLWA LENEDQEVRM LFKDLSARLV ENSBTAP00000022793/1-1289 DLTLSFSVKS RSRRCVNGPL QEAARRRLWA LENEDQEVRA LFQDLSARLV ENSTTRP00000007941/1-1289 DLTLSFSVKS RSRRCVNGPL QEAARRRLWA LENEDQEVRA LFKDLSARLV BACU013127/1-1227 DLTLSFSVKS RSRRCVNGPL QEAARRRLWA LENEDQEVRA LFKDLSARLV bmy_11264T0/1-1049 DLTLSFSVKS RSRRCVNGPL QEAARRRLWA LENEDQEVRA LFKDLSARLV 101 150 ENSP00000423660/1-1288 SIQSQRAQFL ITFKTMEEIW KFSTYLNLGY VSMCLEHLLF DHKYWLNCIL ENSBTAP00000022793/1-1289 GIQSQKAQFL ITFKTMEEIW KFSTYLNLGY VSTCLEHLLF DHKYWLNCRL ENSTTRP00000007941/1-1289 CIQSQKAQFL ITFKTMEEIW KFSTYLNLGY VSMCLEHLLF DHKYWLNCRL BACU013127/1-1227 CIQSQKAQFL ITFKTMEEIW KFSTYLNLGY VSMSLEHLLF DHKYWLNCRL bmy_11264T0/1-1049 CIQSQKAQFL ITFKTMEEIW KFSTYLNLGY VSMCLEHLLF DHKYWLNCRL 151 200 ENSP00000423660/1-1288 VEDTEIQVSV DDKHLETIYL GLLIQEGHFF CRALCSVTPP AEKEGECLTL ENSBTAP00000022793/1-1289 VEDTEIHVSI DDKHLETIYL GLLIQEGHFF CRAMCSVAQP AEKEGEYLTL ENSTTRP00000007941/1-1289 VEDTEIHVSV DDKHLETIYL GLLIQEGHFF CRATCSMAQP AEKEGEYLTL BACU013127/1-1227 VEDTEIHVSV DDKHLETIYL GLLIQEGHFF CRATCSMAQP AEKEGEYLTL bmy_11264T0/1-1049 VEDTEIHVSV DDKHLETIYL GLLIQEGHFF CRATCSMAQP AEKEGEYLTL 201 250 ENSP00000423660/1-1288 CKNELISVKM AEAGSELEGV SLVTGQRGLV LVSALEPLPL PFHQWFLKNY ENSBTAP00000022793/1-1289 CKNELISVKM AEGESEWEAV SLVTGQRGLV PVSALEPLLL PFHQWFLKNY ENSTTRP00000007941/1-1289 CKNELISVKT AEGEFEWEGV SLVTGQRGLV PVSALEPLPL PFHQWFLKNY BACU013127/1-1227 CKNELISVKT AEGEFEWEGV SLVT------ ---------- ---------- bmy_11264T0/1-1049 CKNELISVKT AEGEFEWEGV SLVTGQRGLV PVSALEPLPL PFHQWFLKNY 251 300 ENSP00000423660/1-1288 PGSCGLSRKR DWTGSYQIGR GRCKALTGYE PGEKDELNFY QGESIEIIGF ENSBTAP00000022793/1-1289 PGNCGLSRKR DWTGSYQIGR GKCKAWKEYE REEKDELNFH QGESIEIIGF ENSTTRP00000007941/1-1289 PGSCGLSRKR DWTGSYQIGR GKCKAWKEYE REEKDELNFH QGESIEIIGF BACU013127/1-1227 ---------- --------GR GKCKAWKEYE REEKDELNLH QGESIEIIGF bmy_11264T0/1-1049 PGSCGLSRKK DWTGSYQIGR GKCKAWKEYE REEKDELNFH QGESIEIIGF 301 350 ENSP00000423660/1-1288 VIPGLQWFIG KSTSSGQVGF VPTRNIDPDS YSPMSRNSAF LSDEERCSLL ENSBTAP00000022793/1-1289 VIPGLQWFIG KSALSGEVGF VPTRIIDPDS YSPVSKNSAF FSDEEKCSLG ENSTTRP00000007941/1-1289 VIPGLQWFIG KSALSGEVGF VPTRNIDPDS YSPMSKNATF FSDEERCSLG BACU013127/1-1227 VIPGLQWFIG KSALSGEVGF VPTRNIDPDS YSPMSKNSTF FSDEERCSLG bmy_11264T0/1-1049 VIPGLQWFIG KSALSGEVGF VPTRNIDPDS YSPMSKNSTF FSDEERCSLG 351 400 ENSP00000423660/1-1288 ALGSDKQTEC SSFLHTLART DITSVYRLSG FESIQNPPND LSASQPEGFK ENSBTAP00000022793/1-1289 FLGSDRKAEC VSFLRTLAQT DITSVYQLSG FESIQSLPND LSVSQSEGFK ENSTTRP00000007941/1-1289 VPGSDRKAEC ASFLHTLAQT DITSVYRLSG FESIQSLPND LSASQPEGFK BACU013127/1-1227 VPGSDRKAEC ASFLHTLAQT DITSVYRLSG FESIQSLPND LSASQPEGFK bmy_11264T0/1-1049 VPGSDRKAEC ASFLHTLAQT DITSVYRLSG FESIQSLPND LSASQPEGFK 401 450 ENSP00000423660/1-1288 EVRPGRAWEE HQAVGSRQSS SSEDSSLEEE LLSATSDSYR LPEPDDLDDP ENSBTAP00000022793/1-1289 ETRPGGAWEE HQAMGSRQSS SSEDSSLEEE LLSAASDTYH LPEPDDLDDP ENSTTRP00000007941/1-1289 ETRPGGAWEE HQAVGSRQSS SSEDSSLEEE LLSASSDTYH LPEPDDLDDP BACU013127/1-1227 ETRPGGAWEE HQAVGSRQSS SSEDSSLEEE LLSAASDTYH LPEPDDLDDP bmy_11264T0/1-1049 ETRPGGAWEE HQAVGSRQSS SSEDSSLEEE LLSAASDTYH LPEPDDLDDP 451 500 ENSP00000423660/1-1288 ELLMDLSTGQ -EEEAENFAP ILAFLDHEGY ADHFKSLYDF SFSFLTSSFY ENSBTAP00000022793/1-1289 ELLMNMNTGQ EEEEAENFAP ILAFLDHEGY ADHFKSLYDF SFSFLTSSFY ENSTTRP00000007941/1-1289 ELLMDLNTGQ EEEEAENFTP ILAFLDHEGY ADHFKSLYDF SFSFLTTSFY BACU013127/1-1227 ELLMDLNTGQ EEEEAENFTP ILAFLDHEGY ADHFKSLYDF SFSFLTTSFY bmy_11264T0/1-1049 ELLMDLNTGQ DEEEAENFTP ILAFLDHEGY ADHFKSLYDF SFSFLTTSFY 501 550 ENSP00000423660/1-1288 SFSEEDEFVA YLEASRKWAK KSHMTWAHAR LCFLLGRLSI RKVKLSQARV ENSBTAP00000022793/1-1289 SYSEEDELMA YLEASRKWAK RSHMTWAHAR LCFLLGRLSV RKVKLSQARV ENSTTRP00000007941/1-1289 SYSEEDELVA YLEASRKWAK RSHMTWAHAR LCFLLGRLSV RKVKLSQARV BACU013127/1-1227 SYSEEDELVA YLEASRKWAK RSHMTWAHAR LCFLLGRLSV RKVKLSQARV bmy_11264T0/1-1049 SYSEEDELVA YLEASRKWAK RSHMTWAHAR LCFLLGRLSV RKVKLSQARV 551 600 ENSP00000423660/1-1288 YFEEAIHILN GAFEDLSLVA TLYINLAAIY LKQRLRHKGS ALLEKAGALL ENSBTAP00000022793/1-1289 YFEEAIHILN GAFKDLSLVA SLYINLAAIY LRQRLRHKGS SLLEKAGTLL ENSTTRP00000007941/1-1289 YFEEAIHILN GAFKDLSLAA ALYINLAAIY LRQRLRHKGS GLLEKAGAML BACU013127/1-1227 YFEEAIHILN GAFKDLSLVA ALYINLAAIY LRQRLRHKGS GLLEKAGAML bmy_11264T0/1-1049 YFEEAIHILN GAFKDLSLVA ALYINLAAIY LRQRLRHKGL GLLEKAGAML 601 650 ENSP00000423660/1-1288 ACLPDRESSA KHELDVVAYV LRQGIVVGSS PLEARACFLA IRLLLSLGRH ENSBTAP00000022793/1-1289 ACLPDREYSA KSELDVVAYV LRQGIVSGSC PLEARACFLA IRLLLSLGRH ENSTTRP00000007941/1-1289 VCLPDREYSA KSELDVVAYV LRQGIVSGSC PLEARACFLA VRLLLILGRH BACU013127/1-1227 VCLPDREYSA KSELDVVAYV LRQGIVSGSC PLEARACFLA VRLLLSLGRH bmy_11264T0/1-1049 VCLPDREYSA KSELDVVAYV LRQGIVSGSC PLEARACFLA IRLLLSLGRH 651 700 ENSP00000423660/1-1288 EEVLPFAERL QLLSGHPPAS EAVASVLSFL YDKKYLPHLA VASVQQHGIQ ENSBTAP00000022793/1-1289 DEVLPFAERL QLLSGHPPTS DAAATILSFL YDKKYLPHLA VASVRLRGTP ENSTTRP00000007941/1-1289 DEVLPFAERL QLLSGHPPTL DAATTILSFL YDKKYLPHLA VASVRQRGTQ BACU013127/1-1227 DEVLPFAERL QLLSGHPPTS DAAATILSFL YDKKYLPHLA VASVRQRGTQ bmy_11264T0/1-1049 DEVLPFAERL QLLSGHPPTS DAAATILSFL YDKKYLPHLA VASVRQRGTQ 701 750 ENSP00000423660/1-1288 SAQGMSLPIW QVHLVLQNTT KLLGFPSPGW GEVSALACPM LRQALAACEE ENSBTAP00000022793/1-1289 SVQGMALPIW QVHLVLQNTT KLLGISSPSW GEVSSLSCPA LRQAVTSCEE ENSTTRP00000007941/1-1289 STQGMALPIW QVHLVLQNTT KLLGIPSPSW GEVSSLACPA LRQALAACEE BACU013127/1-1227 STQGMALPIW QVHLVLQNTT KLLGIPSPSW GEVSALACPA LRQALAACEE bmy_11264T0/1-1049 STQGMALPIW QVHLVLQNTT KLLGNPSPSW GEVSALACPA LRQALAACEE 751 800 ENSP00000423660/1-1288 LADRSTQRAL CLILSKVYLE HRSPDGAIHY LSQALVLGQL LGEQESFESS ENSBTAP00000022793/1-1289 QADWSTQRVL CLILSKVYLQ HRSPDGAIHY LSQALMLGQL LSEQEAFESS ENSTTRP00000007941/1-1289 QVDQSTQRTL CLILSKVYLQ HRSPDGAIHY LSQALMLGQL LSEQEAFESS BACU013127/1-1227 QVDERTRRTL CLILSKVYLQ HRSPDGAVHY LSQALMLGQL LSEQEAFESS bmy_11264T0/1-1049 QVDERTRRTL CLILSKVYLQ HRSPDGAIHY LSHALMLGQL LSEQEALESS 801 850 ENSP00000423660/1-1288 LCLAWAYLLA SQAKKALDVL EPLLCSLKET ESLTQRGVIY NLLGLALQGE ENSBTAP00000022793/1-1289 LCLAWAYLLS SQPKKALDIL EPFLYSLKET ESVIHKGVVY NLMGLALQGE ENSTTRP00000007941/1-1289 LCLAWAYLLA SQAKKALDIL EPLLYSLKET ESVTQKGVVH NLLGLALQGE BACU013127/1-1227 LCLAWAYLLA SRAKKALDIL EPLLYSLKET ESVTRKGVVH NLLGLALQGE bmy_11264T0/1-1049 LCLAWAYLLA SRAKKALDIL EPLLYSLKET ESVTQKGVVH NLLGLALQGE 851 900 ENSP00000423660/1-1288 GRVNRAAKSY LRALNRAQEV GDVHNQAVAM ANLGHLSLKS WAQHPARNYL ENSBTAP00000022793/1-1289 GRVNRAAKSY LRALNRAQEV GDVRNQAVAL ANLGHLTLKS WPQQPARNYL ENSTTRP00000007941/1-1289 GQVNRAANSY LWALNRAQEA RDVRNQAVAL ANLGHLTLKS WTQQPARDYL BACU013127/1-1227 GRVNRAANSY LRALNRAQEA RDVRNQAVAL ANLGHLTLKS WTQQPARDYL bmy_11264T0/1-1049 GRVNRAANSY LRALNRAQEA RDVRNQAVAL ANLGHLTLKS WTQQPARDYL 901 950 ENSP00000423660/1-1288 LQAVRLYCEL QASKETDMEL VQVFLWLAQV LVSGHQLTHG LLCYEMALLF ENSBTAP00000022793/1-1289 LQSVQLYSTL QASMETDMEL VQVLLWLAQV QVYGRQLASG RVCYEMALLF ENSTTRP00000007941/1-1289 LQAVQLYSKL QASMETDMEL VQVLLWLAQV EVYRHQLASG RFCYEMALLF BACU013127/1-1227 LQAVQLYSEL QASMETDMEL VQVLLWLAQV EVYRRQLASG RFCYEMALLF bmy_11264T0/1-1049 LQAVQLYSKL QASVETDMEL VQVLLWLAQV EVYRRQLASG RFCYEMALLF 951 1000 ENSP00000423660/1-1288 GLRHRHLKS- ---------- ---------- ---------- -----QLQAT ENSBTAP00000022793/1-1289 GLRHQHLKS- ---------- ---------- ---------- -----QLQVT ENSTTRP00000007941/1-1289 GLRHQHLKS- ---------- ---------- ---------- -----QLQVT BACU013127/1-1227 GLRHQHLKSE YIPCCWDASE KSVRSRFFLC PISSHLIHVP ALCSGQLQVT bmy_11264T0/1-1049 GLRHQHLKSE YIPCCWDASE KSVRSCFFLC PISSHLIHVP ALCSGQLQVT 1001 1050 ENSP00000423660/1-1288 KSLCHFYSSV SPNPEACITY HEHWLALAQQ LRDREMEGRL LESLGQLYRN ENSBTAP00000022793/1-1289 KSLCHFYSSV SPNPEACITY HEHWLTLAQQ LRDREMEGRL LESLGQLYRN ENSTTRP00000007941/1-1289 KSLCHFYSSV SPSPEACITY HEHWLALAQQ LRDREMEGRL LESLGQLYRN BACU013127/1-1227 KSLCHFYSSV SPSPEACITY HEHWLALAQQ LRDREMEGRL LESLGQLYRN bmy_11264T0/1-1049 KSLCHFYSSV SPSPEACITY HEHWLALAQQ LRDREMEGRL LESLGQLYRN 1051 1100 ENSP00000423660/1-1288 LNTARSLRRS LTCIKESLRI FIDLGETDKA AEAWLGAGRL HYLMQEDELV ENSBTAP00000022793/1-1289 LNTSRSLRRS LTCIKESLRI FIDLGERDKA AEAWLGAGRL HYLMQEDELV ENSTTRP00000007941/1-1289 LNTAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU013127/1-1227 LNTARSLRRS LTCIKESLRI FVDLGKRDKA AEAWLGAGRL HYLMQEDELV bmy_11264T0/1-1049 LNTAR----- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000423660/1-1288 ELCLQAAIQT ALKSEEPLLA LKLYEEAGDV FFNGTRHRHH AVEYYRAGAV ENSBTAP00000022793/1-1289 ELYLQAAIQK ALKSEEPSLA LKLYEEAGDV FFNGTRHRHR AVEYYRTGAV ENSTTRP00000007941/1-1289 XXXXXAAIQK ALKSEEPSLP LRLYEEAGDV FFNGTRHRHR AVEYYRAGAV BACU013127/1-1227 ELYLQAAIQK ALKSEEPSLA LRLYEEAGDV FFNGTRHRHR AVEYYRAGAV bmy_11264T0/1-1049 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000423660/1-1288 PLARRLKAVR TELRIFNKLT ELQISLEGYE KALEFATLAA RLSTVTGDQR ENSBTAP00000022793/1-1289 PLARRMKAVR TELRIFNKLT ELQISLEGYE KALEFATLAA RLSTVAGDQR ENSTTRP00000007941/1-1289 PLARRMKAVK TELRIFNKLT ELQISLEGYE KALEFATLAA RLSTVAGDQR BACU013127/1-1227 PLARRMKAVR TELRIFNKLT ELQISLEGYE KALEFATLAA RLSTVAGDQR bmy_11264T0/1-1049 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000423660/1-1288 QELVAFHRLA TVYYSLHMYE MAEDCYLKTL SLCPPWLQSP KEALYYAKVY ENSBTAP00000022793/1-1289 QELVAFHRLA TVYYSLHMYE MAEDCYLKTL SLCPPCLQSP KEALYYAKVY ENSTTRP00000007941/1-1289 QELVAFHRLA TVYYSLHMYE MAEDCYLKTL SLCPPWLQSP KEGLYYAKVY BACU013127/1-1227 QELVAFHRLA TVYYSLHMYE MAEDCYLKTL SLCPPWLQSP KEALYYAKVY bmy_11264T0/1-1049 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000423660/1-1288 YRLGRLTFCQ LKDAHDATEY FLLALAAAVL LGDEELQDTI RSRLDNICQS ENSBTAP00000022793/1-1289 YRLGRLTFYQ LKDAHDATEY FWLALAAAVL LGDEELQDII RTRLDNICQS ENSTTRP00000007941/1-1289 YRLGQLTFYQ LKDAHDATEY FRLALAAAVL LGDEELQDII RTRLDHICQS BACU013127/1-1227 YRLGRLTFYQ LKP--EASRY FPGPIMTSLG ITAWWLQQVL ---VVLWFEK bmy_11264T0/1-1049 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000423660/1-1288 PLWHSRPSGC SSERARWLSG GGLAL- ENSBTAP00000022793/1-1289 PLWHSCPSGR SSERARWLSG GGLAL- ENSTTRP00000007941/1-1289 PLWHSSPSGR SSERARWLSG GGLAL- BACU013127/1-1227 FFTHPTHNIY SLVFRIFMDL VGLKHA bmy_11264T0/1-1049 ---------- ---------- ------