KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:03 2014 Check: 00 .. Name: ENSP00000306776/1-833 Len: 985 Check: 8931 Weight: 1.00 Name: ENSBTAP00000022809/1-818 Len: 985 Check: 8694 Weight: 1.00 Name: ENSTTRP00000011537/1-806 Len: 985 Check: 4282 Weight: 1.00 Name: bmy_00303T0/1-897 Len: 985 Check: 9955 Weight: 1.00 Name: BACU007191/1-949 Len: 985 Check: 2794 Weight: 1.00 // 1 50 ENSP00000306776/1-833 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022809/1-818 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011537/1-806 ---------- ---------- ---------- ---------- ---------- bmy_00303T0/1-897 ---------- ---------- ---------- ---------- ---------- BACU007191/1-949 MSPGKSRAGG CPGRGSPGKR TRGGQRRLLP PRLLPPRSGS RLECGSPRRA 51 100 ENSP00000306776/1-833 ---------- ---------- ---------- ---------- -------MSP ENSBTAP00000022809/1-818 ---------- ---------- ---------- ---------- -------MSP ENSTTRP00000011537/1-806 ---------- ---------- ---------- ---------- -------MSP bmy_00303T0/1-897 ---------- ---------- --SEQPGPPP RRGPSAPSRG RSARPRPESP BACU007191/1-949 AHLRPPREES TACVPAPAQL PASEQPGPPP RRGPSAPSRG RSARPRPESP 101 150 ENSP00000306776/1-833 ---------- --------EK QHREEDEVDS VLLSASKILN SSEGVKESGC ENSBTAP00000022809/1-818 ---------- --------EK RPEEEDEVDC VLLSASKILN SSEGIKENGS ENSTTRP00000011537/1-806 ---------- --------EK Y--EVEGVDC VLLSAPKILN SSEGVKENSG bmy_00303T0/1-897 RLASFLPAKP KATYCSVTEK NPEEEEEVDC VLLSAPKILN SSEGVKENGG BACU007191/1-949 RLASFLPAKP KATYCSVTEK HPEEEEEVDC VLLSAPKILN SSEGVKENGG 151 200 ENSP00000306776/1-833 SDTEYGCIAE SENQIQPQSA LKVLQQQLES FQALRMQTLQ NVSMVQSEIS ENSBTAP00000022809/1-818 SETEHGCVSE SENQIQPQSA LKALQQQLES FQALRIQTLQ NVSMVQSEIS ENSTTRP00000011537/1-806 SETEYGCITE SENQIQPHSA LKALQHQLES FQALRIQTLQ NVSMVQSEIS bmy_00303T0/1-897 SEIEYGCITE SENQIQPQSA LKALQHQLES FQALRMQTLQ NVSMVQSEIS BACU007191/1-949 SETEYGCITE SENQIQPHSA LKALQHQLES FQALRIQTLQ NVSMVQSEIS 201 250 ENSP00000306776/1-833 EILNKSIIEV ENPQFSSEKN LVFGTRIEKD L--------- ---------- ENSBTAP00000022809/1-818 EILNKSIIEV ENPQFNPEKN LVFGTHNETA L--------- ---------- ENSTTRP00000011537/1-806 EILNKSIIEV ENPQFSSEKN LVFSTRNEKA L--------- ---------- bmy_00303T0/1-897 EILNKSITEV ENPQFSSEKN LVFSTRNEKA LGDWIVKNEN KETPVLKTLK BACU007191/1-949 EILNKSITEV ENPQFSSEKN LVFSTRNEKA LGDWIVKDEN KETPVLKTLK 251 300 ENSP00000306776/1-833 ---------- --PTENQEEN LSMEKSHHFE DSKTLHSVEE KLSGDSVNSL ENSBTAP00000022809/1-818 ---------- --PIENQEET LSTEKIHHFE DSRTLHSAEE KFSSDSIDSL ENSTTRP00000011537/1-806 ---------- --PVENQEET LSMEKIQPFE DPRTLHSVEE IFSSDSVNRL bmy_00303T0/1-897 DVRLPLYFCN FLPIENQEET LSMEKIQHFE DPRTLHSVEE IFSSDSVNSL BACU007191/1-949 D--------- --PIENQEET LSMEKIQHFE DPRTLHSVEE IFSSDSVNSL 301 350 ENSP00000306776/1-833 PQSVNVPSQI HSEDTLTLRT STDNLSSNII IHPSENSDIL KNYNNFYRFL ENSBTAP00000022809/1-818 PQSIDVPCQI HFKDTLPLRI STDN------ -SASENSDGL KNYNNFYNLL ENSTTRP00000011537/1-806 SQGINIPCQI HFKDIL---T STDN------ -SASENSD-L KNYNNLYNFL bmy_00303T0/1-897 SQGINIPCQI HFKDIL---T STDN------ -SASENSD-L KNYNNLYNFL BACU007191/1-949 SQGINIPCQI HFKDIL---T STDN------ -SASENSD-L KNDNNLYNFL 351 400 ENSP00000306776/1-833 PTAPPNVMSQ ADTVILDKSK ITVPFLKHGF CENLDDICHS IKQMKEELQK ENSBTAP00000022809/1-818 PNVPQNGMSQ AETLILDKSR MTMPFLKNGF CENLDDICHS IKQMKEELQK ENSTTRP00000011537/1-806 PNVPQNGMSQ ADMVILDKSR VTVPYLKHGF CENLDDICHS IKQMKEELQK bmy_00303T0/1-897 PNVPQNGMSQ ADMVIVDKSR ITVPFLKHGF CENLDDICHS IKQMKEELQK BACU007191/1-949 PNVPQNGMSQ ADMVIVDKSR ITVPFLKHGF CENLDDICHS IKQMKEELQK 401 450 ENSP00000306776/1-833 SHDGEVALTN ELQTLQTDPD VHRNGKYDMS PIHQDKMNFI KEENLDGNLN ENSBTAP00000022809/1-818 SHNRELALTN ELQTLKAVP- --RHGNYDLP PVHKEKNNFI KEENIESNLS ENSTTRP00000011537/1-806 SHDKELALTN ELQTLKAVP- --RNGNYDLP PTHKEKINFI KEENIESNLN bmy_00303T0/1-897 SHDRELALTN ELQTLKAIP- --RNGNYDLP PTHKEKINFI KEENIESNLN BACU007191/1-949 SHDRELALTN ELQTLKAIP- --RNGNYDLP PTHKEKINFI KEENIESNLN 451 500 ENSP00000306776/1-833 EDIKSKRISE LEALVKKLLP FRETVSKFHV HFCRKCKKLS KSEMHRGKKN ENSBTAP00000022809/1-818 EDIKSKRILE LEALVNKLLP LRETVSKFHV NFCRKCKKLS RSEIHRGKRN ENSTTRP00000011537/1-806 EDIKSKRILE LEAL------ -RETVSKFHV NFCRKCKKLS KSEIHRGEKN bmy_00303T0/1-897 EDTKSKRISE LEALVNKLLP LRETVSKFHV NFCRKCKKLS KSEIHRGGKN BACU007191/1-949 EDIKSKRILE LEPLVNKLLP LRETVSKFHV SFCRKCKKLS KSEIHRGEKN 501 550 ENSP00000306776/1-833 EKNNKEIPIT GKNITDLKFH SRVPRYTLSF LDQTKHEMKD KERQPFLVKQ ENSBTAP00000022809/1-818 EKNNKEIPIT DKNIADLKLH SRVPRHTLAF IDPTKYEMKD KEKQPFTVKQ ENSTTRP00000011537/1-806 EKNNKEIPIA DKNTADLKLH STVPKHTLAF CDPTKYAMKD KERQPFAVKQ bmy_00303T0/1-897 EKNNKEIPIT DKNIADLKLH SRVPRHTLAF FDPTKYAMKD KERQPFAVKQ BACU007191/1-949 EKNNKEIPIT DKNIADLKLH SRVPRHTLAF FDPTKYAMKD KERQPFAVKQ 551 600 ENSP00000306776/1-833 GSIISENEKT SKVNSVTEQC VAKIQYLQNY LKESVQIQKK VMELESENLN ENSBTAP00000022809/1-818 GSIIFENEKT SKVNSVTEQC VAKIQYLQNY LKESMQIQKK VMKLENENLT ENSTTRP00000011537/1-806 GSIIFESEKT SKVNSVTEQC VAKIQYLQNY LKESMQIQKK VLKLENENLT bmy_00303T0/1-897 GSIIFENEKT SKVNSVTEQC VAKIQYLQNY LKESMQIQKK VMKLENENLT BACU007191/1-949 GSIIFENEKT SKVNSVTEQC VAKIQYLQNY LKESMQIQKK VMKLENENLT 601 650 ENSP00000306776/1-833 LKSKMKPLIF TTQSLIQKVE TYEKQLKNLV EEKSTIQSKL SKTEEYSKEC ENSBTAP00000022809/1-818 LKTKIKPLVF TTQSLIQKIE MYEKQLKTLV EEKNTLQSKL TKTEEDGKEC ENSTTRP00000011537/1-806 LKAKIKLLVF TTQSLIQKIE MYEKQLKTLA EEKNTIQPKL IKTEEDGKEC bmy_00303T0/1-897 LKMKIKPLVF ITQSLIQKIE MYEKQLKTLV EEKNTIQSKL IKTEEDGKEC BACU007191/1-949 LKTKIKPLVF ITQSLIQKIE MYEKQLKTLV EEKNTIQSKL IKTEEDGKEC 651 700 ENSP00000306776/1-833 LKEFKKIISK YNVLQGQNKT LEEKNIQLSL EKQQMMEALD QLKSKEHKTQ ENSBTAP00000022809/1-818 LKELKKIVSN YNVLQGQNKT LEEKNSQLSL ENQQIIEALD QLKSKEHKTQ ENSTTRP00000011537/1-806 VKELKEIISN -NVLQGQNKI LEEKNSQLSL EKQQIIETLE QLKSKEHKTQ bmy_00303T0/1-897 LKELKEIISN YNVLQGQNKT LEEKNSQLSL EKQQMIETLE QLKSKEHQTQ BACU007191/1-949 LKELKEIISN YNVLQGQNKT LEEKNSQLSL EKQQMIETLE QLKSKEHQTQ 701 750 ENSP00000306776/1-833 SDMAIVNNEN NRMSIEMEAM KTNILLIQDE KEMLEKKTHQ LLKEKSSLGN ENSBTAP00000022809/1-818 SDMAIVNNEN KRLSIEMESM KTNILLIQEE KEMLEKKTHQ LLKEKGALEN ENSTTRP00000011537/1-806 SDMAIVNNEN KLLITEMESM KTNILLIQEE KEVLEEKTYQ LLKEKGSLEN bmy_00303T0/1-897 SDMAIVNNEN KLLITEMESM KTNILLIQEE KEMLEEKTYQ LLKEKGSLEN BACU007191/1-949 SDMAIVNNEN KLLITEMESM KTNILLIQEE KEMLEEKTYQ LLTEKGSLEN 751 800 ENSP00000306776/1-833 ELKESQLEII QLKEKERLAK TEQETLLQII ETVKDEKLNL ETTLQESTAA ENSBTAP00000022809/1-818 ELKETRLETA QLKEKERLAK IEQETLLQIV ETVKNEKLNL ETTLQESTAA ENSTTRP00000011537/1-806 ERKENQLEIM QLKEKERLAK TEQETLLQII ETVKNEKLNL ETTLQESTAA bmy_00303T0/1-897 EQKENQLEIM QLKEKERLAK TEQETLLQII ETVKNEKLNL ETTLQESTAA BACU007191/1-949 EQKENQLEIM QLKEKERLAK TEQETLLHII ETVKNEKLNL ETTLQESTAA 801 850 ENSP00000306776/1-833 RQIMEREIEN IQTYQSTAEE NFLQEIKNAK SEASIYKNSL SEIGKECEML ENSBTAP00000022809/1-818 REMMAREIED IQTYQSTAEE NFLQEIKNAK SEASIYKNSL SEMGNECELL ENSTTRP00000011537/1-806 REMMEREIED IQTYQSTAEE NFLQEIKNAK SEASIYKNSL SEIGNKCEML bmy_00303T0/1-897 REMMEREIED IQTYQSTAKE NFLQEIKNAK SEASIYKNSL LEMGNECEML BACU007191/1-949 REMMEREIED IQTYQSTTEE NFLQEIKNAK SEASMYKNSL SEMGNKCEML 851 900 ENSP00000306776/1-833 SKMVMETKTD NQILKEELKK HSQENIKFEN SISRLTEDKI LLENYVRSIE ENSBTAP00000022809/1-818 SKMLMEIKTD NQLLKEELKK NSQESIKFEN SISRLEEDKI LLENYVRSIE ENSTTRP00000011537/1-806 SKMLMKIKTD NQILKEELKK HSQ-SIKFEN SISXXEEDKI LL-NYVRSIE bmy_00303T0/1-897 SKMLMEIKTD NQILKEELKK HSQESIKFEN TISRLEEDKI LLENYVRSIE BACU007191/1-949 SKMLMEIKTD NQILKEELKN HSQESIKFEN SISRLEEDKI LLENYVRSIE 901 950 ENSP00000306776/1-833 NERDTLEFEM RHLQREYLSL SDKICNQHND PSKTTYISRR EKFHFDNYT- ENSBTAP00000022809/1-818 NERDTLEFEM RNLQREYSNL SEKICSHHID LSKMGHISRK DKFHFDIYDI ENSTTRP00000011537/1-806 NERDTLEFEM RNLQKEYLNL SEKIYNHHID LSKMGYISRR EKFHFDIYDI bmy_00303T0/1-897 NERDTLEFEM RNLQREYLNL SEKIYNHHID LSKMGYISRR EKFHLDIYDI BACU007191/1-949 NERDTLEFEM QNLQREYLNL SEKIYNHRID LSKMGYISRR EKFHLDIYDI 951 1000 ENSP00000306776/1-833 HEDTSSPQSR PLASDLKG-- ---YFKVKDR TLKHH ENSBTAP00000022809/1-818 YEDTSSPGNR PLALGLKGM- ---YILVD-- ----- ENSTTRP00000011537/1-806 YEDTSSPKSR PLAPDLKG-- ---YLKVKNR KCH-- bmy_00303T0/1-897 YEDTSSPRSR PLAPDLKGIP SKPYQLLPSK PCK-- BACU007191/1-949 YENTSSPRSR PLAPDLKGM- ---YIVVD-- -----